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Cell
934
Nucleus
679
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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
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Most cells
Fewest cells
2515
datasets
CELLxGENE
23,287 cells
•
Gong et al., 2025
Multi-omic profiling reveals age-related immune dynamics in healthy adults
Explore
h5ad
Homo sapiens
Homo sapiens
Cd1c-positive myeloid dendritic cell
+3
Cd1c-positive myeloid dendritic cell
Blood
Blood
34-year-old stage
+24
34-year-old stage
Cytomegalovirus infection
+1
Cytomegalovirus infection
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Cd1c-positive myeloid dendritic cell
Cd141-positive myeloid dendritic cell
Plasmacytoid dendritic cell
Axl+ dendritic cell, human
Tissue
Blood
Developmental stage
34-year-old stage
65-year-old stage
26-year-old stage
61-year-old stage
30-year-old stage
29-year-old stage
56-year-old stage
55-year-old stage
28-year-old stage
57-year-old stage
12-year-old stage
35-year-old stage
58-year-old stage
59-year-old stage
25-year-old stage
32-year-old stage
33-year-old stage
64-year-old stage
62-year-old stage
60-year-old stage
31-year-old stage
36-year-old stage
63-year-old stage
11-year-old stage
27-year-old stage
Disease
Cytomegalovirus infection
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
Human Immune Health Atlas
Human Immune Health Atlas github
Dynamics of IHA Collection
phs003841
GSE275067
CELLxGENE
23,204 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Mus musculus
Mus musculus
Podocyte
+13
Podocyte
Kidney
Kidney
6-month-old stage
6-month-old stage
Autosomal dominant polycystic kidney disease
Autosomal dominant polycystic kidney disease
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Podocyte
Endothelial cell
Kidney interstitial fibroblast
Blood vessel smooth muscle cell
Kidney collecting duct intercalated cell
Leukocyte
Macrophage
Kidney distal convoluted tubule epithelial cell
Kidney granular cell
Kidney collecting duct principal cell
Kidney loop of henle thick ascending limb epithelial cell
Macula densa epithelial cell
Mesangial cell
Kidney proximal convoluted tubule epithelial cell
Tissue
Kidney
Developmental stage
6-month-old stage
Disease
Autosomal dominant polycystic kidney disease
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
ncbi.nlm.nih.gov
Kidney Slide-seq Github
protocols.io
Macosko Lab Slide-seq Github
grekalab.org
CELLxGENE
23,197 cells
•
Otero-Garcia et al., 2022
Molecular signatures underlying neurofibrillary tangle susceptibility in Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Inhibitory interneuron
Inhibitory interneuron
Prefrontal cortex
Prefrontal cortex
66-year-old stage
+13
66-year-old stage
Normal
+1
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Inhibitory interneuron
Tissue
Prefrontal cortex
Developmental stage
66-year-old stage
89-year-old stage
87-year-old stage
71-year-old stage
61-year-old stage
68-year-old stage
57-year-old stage
72-year-old stage
81-year-old stage
80 year-old and over stage
67-year-old stage
62-year-old stage
79-year-old stage
73-year-old stage
Disease
Normal
Alzheimer disease
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
Single-soma isolation protocol
GSE129308
CELLxGENE
23,145 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Homo sapiens
Homo sapiens
Podocyte
+12
Podocyte
Cortex of kidney
Cortex of kidney
64-year-old stage
64-year-old stage
Normal
Normal
Female
Female
Slide-seqv2
Slide-seqv2
Organism
Homo sapiens
Cell type
Podocyte
Endothelial cell
Kidney interstitial fibroblast
Blood vessel smooth muscle cell
Kidney collecting duct intercalated cell
Leukocyte
Macrophage
Kidney distal convoluted tubule epithelial cell
Kidney granular cell
Kidney collecting duct principal cell
Kidney loop of henle thick ascending limb epithelial cell
Mesangial cell
Kidney proximal convoluted tubule epithelial cell
Tissue
Cortex of kidney
Developmental stage
64-year-old stage
Disease
Normal
Sex
Female
Technology
Slide-seqv2
Suspension type
Related Links
ncbi.nlm.nih.gov
Kidney Slide-seq Github
protocols.io
Macosko Lab Slide-seq Github
grekalab.org
CELLxGENE
23,120 cells
•
Siletti et al., 2023
Transcriptomic diversity of cell types across the adult human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Midbrain-derived inhibitory neuron
+24
Midbrain-derived inhibitory neuron
Nucleus of medulla oblongata
Nucleus of medulla oblongata
42-year-old stage
+1
42-year-old stage
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Midbrain-derived inhibitory neuron
T cell
Central nervous system macrophage
Natural killer cell
Oligodendrocyte precursor cell
Endothelial cell
Oligodendrocyte
Committed oligodendrocyte precursor
Cerebellar granule cell
Lamp5 lhx6 neuron
Cerebellar inhibitory gabaergic interneuron
Ependymal cell
Microglial cell
Choroid plexus epithelial cell
Bergmann glial cell
B cell
Pericyte
Neuron
Monocyte
Intratelencephalic-projecting glutamatergic cortical neuron
Caudal ganglionic eminence derived interneuron
Vascular associated smooth muscle cell
Astrocyte
Unipolar brush cell
Fibroblast
Tissue
Nucleus of medulla oblongata
Developmental stage
42-year-old stage
50-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
data.nemoarchive.org
github (analysis and figures)
github (auto-annotations)
CELLxGENE
23,064 cells
•
Matuck et al., 2026
An integrated single-cell and spatial proteotranscriptomics atlas of fibroblast-driven immunoregulation within the human adult oral cavity
Explore
h5ad
Homo sapiens
Homo sapiens
Neutrophil
+8
Neutrophil
Gingiva
+3
Gingiva
21-year-old stage
+17
21-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Neutrophil
Mast cell
Cd8-positive, alpha-beta t cell
Cd4-positive helper t cell
Macrophage
Innate lymphoid cell
Plasma cell
B cell
Dendritic cell
Tissue
Gingiva
Buccal mucosa
Hard palate
Soft palate
Developmental stage
21-year-old stage
34-year-old stage
26-year-old stage
Sixth decade stage
61-year-old stage
30-year-old stage
39-year-old stage
29-year-old stage
28-year-old stage
51-year-old stage
57-year-old stage
24-year-old stage
35-year-old stage
Seventh decade stage
32-year-old stage
33-year-old stage
31-year-old stage
22-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
github.com
CELLxGENE
22,891 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Lamp5 gabaergic interneuron
Lamp5 gabaergic interneuron
Dorsolateral prefrontal cortex
Dorsolateral prefrontal cortex
69-year-old stage
+20
69-year-old stage
Normal
+1
Normal
Female
+1
Female
10x multiome
+1
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Lamp5 gabaergic interneuron
Tissue
Dorsolateral prefrontal cortex
Developmental stage
69-year-old stage
75-year-old stage
42-year-old stage
89-year-old stage
87-year-old stage
85-year-old stage
88-year-old stage
68-year-old stage
29-year-old stage
84-year-old stage
82-year-old stage
50-year-old stage
80-year-old stage
72-year-old stage
81-year-old stage
80 year-old and over stage
77-year-old stage
86-year-old stage
70-year-old stage
78-year-old stage
83-year-old stage
Disease
Normal
Dementia
Sex
Female
Male
Technology
10x multiome
10x 3' v3
Suspension type
Nucleus
Related Links
UW Alzheimer's Disease Research Center
Adult Changes in Thought Study
UW BioRepository and Integrated Neuropathology
SEA-AD Homepage
AD Knowledge Portal
DOWNLOAD OFFICIAL DATASET
CELLxGENE
22,852 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Homo sapiens
Homo sapiens
Podocyte
+12
Podocyte
Renal medulla
Renal medulla
72-year-old stage
72-year-old stage
Normal
Normal
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Homo sapiens
Cell type
Podocyte
Endothelial cell
Kidney interstitial fibroblast
Blood vessel smooth muscle cell
Kidney collecting duct intercalated cell
Leukocyte
Macrophage
Kidney distal convoluted tubule epithelial cell
Kidney granular cell
Kidney collecting duct principal cell
Kidney loop of henle thick ascending limb epithelial cell
Mesangial cell
Kidney proximal convoluted tubule epithelial cell
Tissue
Renal medulla
Developmental stage
72-year-old stage
Disease
Normal
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
ncbi.nlm.nih.gov
Kidney Slide-seq Github
protocols.io
Macosko Lab Slide-seq Github
grekalab.org
Single Cell Portal
22,753 cells
Explore
Mus musculus
Mus musculus
Obsolete inhibitory neuron
+4
Obsolete inhibitory neuron
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Obsolete inhibitory neuron
Oligodendrocyte precursor cell
Brain microvascular endothelial cell
Obsolete excitatory neuron
Astrocyte
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD720) (section 247)
Corresponding registered brain section (MD720) (section 248)
Corresponding registered brain section (MD720) (section 249)
Corresponding registered brain section (MD720) (section 250)
Corresponding registered brain section (MD720) (section 251)
Corresponding registered brain section (MD720) (section 252)
CELLxGENE
22,734 cells
•
Emont et al., 2022
A single-cell atlas of human and mouse white adipose tissue
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell of lymphatic vessel
+3
Endothelial cell of lymphatic vessel
Subcutaneous adipose tissue
+1
Subcutaneous adipose tissue
71-year-old stage
+13
71-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Nucleus
+1
Nucleus
Organism
Homo sapiens
Cell type
Endothelial cell of lymphatic vessel
Endothelial cell
Smooth muscle cell
Pericyte
Tissue
Subcutaneous adipose tissue
Omental fat pad
Developmental stage
71-year-old stage
53-year-old stage
68-year-old stage
29-year-old stage
51-year-old stage
57-year-old stage
49-year-old stage
24-year-old stage
35-year-old stage
58-year-old stage
59-year-old stage
41-year-old stage
36-year-old stage
73-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Drop-seq
Suspension type
Nucleus
Cell
Related Links
singlecell.broadinstitute.org
gitlab.com
scRNA-seq (GSE176067)
sNuc-seq (GSE176171)
phs002766
CELLxGENE
22,671 cells
•
The Tabula Sapiens Consortium* et al., 2022
The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+27
T cell
Trachea
Trachea
61-year-old stage
+5
61-year-old stage
Normal
Normal
Female
+1
Female
Smart-seq2
+1
Smart-seq2
Cell
Cell
Organism
Homo sapiens
Cell type
T cell
Neutrophil
Granulocyte
Natural killer cell
Multiciliated columnar cell of tracheobronchial tree
Endothelial cell
Mature nk t cell
Mast cell
Cd8-positive, alpha-beta t cell
Basal cell
Ionocyte
Smooth muscle cell
Intermediate monocyte
Connective tissue cell
Plasmacytoid dendritic cell
Myeloid dendritic cell
Macrophage
Innate lymphoid cell
Regulatory t cell
Plasma cell
Cd4-positive, alpha-beta t cell
Tracheal goblet cell
B cell
Serous cell of epithelium of trachea
Monocyte
Mucus secreting cell
Fibroblast
Non-classical monocyte
Tissue
Trachea
Developmental stage
61-year-old stage
56-year-old stage
59-year-old stage
67-year-old stage
45-year-old stage
60-year-old stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
10x 3' v3
Suspension type
Cell
Related Links
registry.opendata.aws
Tabula Sapiens Portal
explore.data.humancellatlas.org
cells.ucsc.edu
genome.ucsc.edu
The Tabula Sapiens Consortium et al. (2024) bioRxiv
CELLxGENE
22,659 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Mus musculus
Mus musculus
Podocyte
+12
Podocyte
Kidney
Kidney
13-week-old stage
13-week-old stage
Diabetic kidney disease
Diabetic kidney disease
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Podocyte
Endothelial cell
Kidney interstitial fibroblast
Blood vessel smooth muscle cell
Kidney collecting duct intercalated cell
Leukocyte
Macrophage
Kidney distal convoluted tubule epithelial cell
Kidney granular cell
Kidney collecting duct principal cell
Kidney loop of henle thick ascending limb epithelial cell
Mesangial cell
Kidney proximal convoluted tubule epithelial cell
Tissue
Kidney
Developmental stage
13-week-old stage
Disease
Diabetic kidney disease
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
ncbi.nlm.nih.gov
Kidney Slide-seq Github
protocols.io
Macosko Lab Slide-seq Github
grekalab.org
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