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Disease
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Technology
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Cell
893
Nucleus
659
Data Source
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Asap
43
Bgee
40
Cellxgene
2,077
Single cell portal
179
Sort
Most cells
Fewest cells
2339
datasets
CELLxGENE
20,571 cells
•
Tran et al., 2021
Single-nucleus transcriptome analysis reveals cell-type-specific molecular signatures across reward circuitry in the human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Oligodendrocyte
+9
Oligodendrocyte
Nucleus accumbens
Nucleus accumbens
54-year-old stage
+7
54-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Oligodendrocyte
Astrocyte
Microglial cell
Oligodendrocyte precursor cell
Macrophage
Pvalb gabaergic interneuron
Indirect pathway medium spiny neuron
Gabaergic interneuron
Direct pathway medium spiny neuron
Immature microglial cell
Tissue
Nucleus accumbens
Developmental stage
54-year-old stage
42-year-old stage
59-year-old stage
68-year-old stage
61-year-old stage
52-year-old stage
51-year-old stage
40-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
research.libd.org
Github:LieberInstitute/10xPilot_snRNAseq-human
CELLxGENE
20,568 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Mus musculus
Mus musculus
Kidney loop of henle thick ascending limb epithelial cell
+13
Kidney loop of henle thick ascending limb epithelial cell
Kidney
Kidney
13-week-old stage
13-week-old stage
Normal
Normal
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Kidney loop of henle thick ascending limb epithelial cell
Kidney interstitial fibroblast
Leukocyte
Kidney proximal convoluted tubule epithelial cell
Macula densa epithelial cell
Podocyte
Kidney collecting duct principal cell
Macrophage
Blood vessel smooth muscle cell
Endothelial cell
Kidney collecting duct intercalated cell
Mesangial cell
Kidney granular cell
Kidney distal convoluted tubule epithelial cell
Tissue
Kidney
Developmental stage
13-week-old stage
Disease
Normal
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
Github:marshalljamie/Kidney-Slide-seq
protocols.io:library-generation-using-slide-seqv2-bpgzmjx6
Github:MacoskoLab/slideseq-tools
grekalab.org
GEO series:GSE190094
CELLxGENE
20,556 cells
•
Garcia-Alonso et al., 2022
Single-cell roadmap of human gonadal development
Explore
h5ad
Homo sapiens
Homo sapiens
Plasmacytoid dendritic cell
+17
Plasmacytoid dendritic cell
Gonad
Gonad
Carnegie stage 21
+16
Carnegie stage 21
Normal
Normal
Female
+1
Female
10x 5' v2
+1
10x 5' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Plasmacytoid dendritic cell
Natural killer cell
Precursor b cell
Neutrophil progenitor cell
B cell
Early t lineage precursor
Common myeloid progenitor
Conventional dendritic cell
Neutrophil
Monocyte
Granulocyte monocyte progenitor cell
Pro-b cell
Macrophage
Fraction a pre-pro b cell
Megakaryocyte
Immature innate lymphoid cell
Megakaryocyte-erythroid progenitor cell
Mast cell
Tissue
Gonad
Developmental stage
Carnegie stage 21
10th week post-fertilization stage
14th week post-fertilization stage
9th week post-fertilization stage
16th week post-fertilization stage
11th week post-fertilization stage
21st week post-fertilization stage
15th week post-fertilization stage
Carnegie stage 23
Carnegie stage 17
19th week post-fertilization stage
Carnegie stage 18
Carnegie stage 19
13th week post-fertilization stage
12th week post-fertilization stage
18th week post-fertilization stage
17th week post-fertilization stage
Disease
Normal
Sex
Female
Male
Technology
10x 5' v2
10x 5' v1
Suspension type
Cell
Related Links
ArrayExpress BioStudies:E-MTAB-10551
ArrayExpress BioStudies:E-MTAB-11480
reproductivecellatlas.org
ventolab.org
CELLxGENE
20,515 cells
•
Madissoon et al., 2022
A spatially resolved atlas of the human lung characterizes a gland-associated immune niche
Explore
h5ad
Homo sapiens
Homo sapiens
Bronchus fibroblast of lung
+8
Bronchus fibroblast of lung
Lung
+4
Lung
66-year-old stage
+8
66-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v2
+2
10x 3' v2
Cell
+1
Cell
Organism
Homo sapiens
Cell type
Bronchus fibroblast of lung
Adventitial cell
Non-myelinating schwann cell
Lung perichondrial fibroblast
Fibroblast of lung
Myofibroblast cell
Myelinating schwann cell
Fibroblast
Mesothelial cell
Tissue
Lung
Trachea
Upper lobe of left lung
Lower lobe of left lung
Bronchus
Developmental stage
66-year-old stage
59-year-old stage
64-year-old stage
Seventh decade stage
75-year-old stage
35-year-old stage
Sixth decade stage
58-year-old stage
29-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v2
10x 5' transcription profiling
10x 3' v3
Suspension type
Cell
Nucleus
Related Links
ENA Project:PRJEB52292
ArrayExpress BioStudies:E-MTAB-11640
Bioimage Archive:S-BIAD570
Sanger Dataset:5locationslung
HumanCellAtlas:957261f7-2bd6-4358-a6ed-24ee080d5cfc
Single Cell Portal
20,513 cells
Explore
Mus musculus
Mus musculus
Oligodendrocyte
+4
Oligodendrocyte
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Oligodendrocyte
Astrocyte
Obsolete excitatory neuron
Brain microvascular endothelial cell
Obsolete inhibitory neuron
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD721) (section 223)
Corresponding registered brain section (MD721) (section 224)
Corresponding registered brain section (MD721) (section 225)
CELLxGENE
20,509 cells
•
Zhang et al., 2021
Single-cell analyses of renal cell cancers reveal insights into tumor microenvironment, cell of origin, and therapy response
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+8
T cell
Kidney
Kidney
66-year-old stage
+5
66-year-old stage
Clear cell renal carcinoma
Clear cell renal carcinoma
Male
Male
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
T cell
B cell
Pericyte
Macrophage
Abnormal cell
Vascular associated smooth muscle cell
Endothelial cell
Plasma cell
Mast cell
Tissue
Kidney
Developmental stage
66-year-old stage
74-year-old stage
76-year-old stage
69-year-old stage
70-year-old stage
71-year-old stage
Disease
Clear cell renal carcinoma
Sex
Male
Technology
10x 3' v2
Suspension type
Cell
Related Links
HumanCellAtlas:7c599029-7a3c-4b5c-8e79-e72c9a9a65fe
CELLxGENE
20,475 cells
•
Lim et al., 2023
Organoid modeling of human fetal lung alveolar development reveals mechanisms of cell fate patterning and neonatal respiratory disease
Explore
h5ad
Homo sapiens
Homo sapiens
Pulmonary alveolar type 2 cell
+7
Pulmonary alveolar type 2 cell
Lung epithelium
Lung epithelium
Sixth lmp month stage
Sixth lmp month stage
Normal
Normal
10x 5' v1
10x 5' v1
Cell
Cell
Organism
Homo sapiens
Cell type
Pulmonary alveolar type 2 cell
Epithelial cell of lung
Neuroendocrine cell of epithelium of lobar bronchus
Pulmonary alveolar type 1 cell
Pulmonary neuroendocrine cell
Respiratory basal cell
Fetal pre-type ii pulmonary alveolar epithelial cell
Cycling pulmonary alveolar type 2 cell
Tissue
Lung epithelium
Developmental stage
Sixth lmp month stage
Disease
Normal
Sex
Technology
10x 5' v1
Suspension type
Cell
Related Links
Sanger Dataset:fetal-lung-organoid
ebi.ac.uk
Github:Peng-He-Lab/2023-Late-tip-organoid
ENA Project:ERP135437
CELLxGENE
20,470 cells
•
Nascimento et al., 2023
Protracted neuronal recruitment in the temporal lobes of young children
Explore
h5ad
Homo sapiens
Homo sapiens
Obsolete chandelier cell
+8
Obsolete chandelier cell
Entorhinal cortex
+1
Entorhinal cortex
3-year-old stage
+10
3-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Obsolete chandelier cell
Sst gabaergic interneuron
Lamp5 gabaergic interneuron
Forebrain neuroblast
Vip gabaergic interneuron
Sst chodl gabaergic interneuron
Pvalb gabaergic interneuron
Caudal ganglionic eminence derived interneuron
Sncg gabaergic interneuron
Tissue
Entorhinal cortex
Ganglionic eminence
Developmental stage
3-year-old stage
2-month-old stage
21st week post-fertilization stage
27-year-old stage
1-month-old stage
13-year-old stage
2-year-old stage
79-year-old stage
50-year-old stage
51-year-old stage
Newborn stage (0-28 days)
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
dbGaP Study:phs003509
GEO series:GSE199762
CELLxGENE
20,424 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Mus musculus
Mus musculus
Kidney loop of henle thick ascending limb epithelial cell
+13
Kidney loop of henle thick ascending limb epithelial cell
Kidney
Kidney
6-month-old stage
6-month-old stage
Autosomal dominant polycystic kidney disease
Autosomal dominant polycystic kidney disease
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Kidney loop of henle thick ascending limb epithelial cell
Kidney interstitial fibroblast
Leukocyte
Kidney proximal convoluted tubule epithelial cell
Macula densa epithelial cell
Podocyte
Kidney collecting duct principal cell
Macrophage
Blood vessel smooth muscle cell
Endothelial cell
Kidney collecting duct intercalated cell
Mesangial cell
Kidney granular cell
Kidney distal convoluted tubule epithelial cell
Tissue
Kidney
Developmental stage
6-month-old stage
Disease
Autosomal dominant polycystic kidney disease
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
Github:marshalljamie/Kidney-Slide-seq
protocols.io:library-generation-using-slide-seqv2-bpgzmjx6
Github:MacoskoLab/slideseq-tools
grekalab.org
GEO series:GSE190094
CELLxGENE
20,407 cells
•
Ivanova et al., 2023
mRNA COVID-19 vaccine elicits potent adaptive immune response without the acute inflammation of SARS-CoV-2 infection
Explore
h5ad
Homo sapiens
Homo sapiens
Cd38-negative naive b cell
+3
Cd38-negative naive b cell
Blood
Blood
Fourth decade stage
+3
Fourth decade stage
Covid-19
+1
Covid-19
Female
+1
Female
10x 5' v2
+1
10x 5' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Cd38-negative naive b cell
B-2 b cell
Unswitched memory b cell
Plasmablast
Tissue
Blood
Developmental stage
Fourth decade stage
Seventh decade stage
Fifth decade stage
Sixth decade stage
Disease
Covid-19
Normal
Sex
Female
Male
Technology
10x 5' v2
10x 5' v1
Suspension type
Cell
Related Links
GEO series:GSE247917
CELLxGENE
20,321 cells
•
Kedlian et al., 2024
Human skeletal muscle aging atlas
Explore
h5ad
Homo sapiens
Homo sapiens
Plasmacytoid dendritic cell
+20
Plasmacytoid dendritic cell
Intercostal muscle
Intercostal muscle
Fourth decade stage
+5
Fourth decade stage
Normal
Normal
Female
+1
Female
10x 3' v2
+1
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Plasmacytoid dendritic cell
Cd14-positive, cd16-low monocyte
Cd14-low, cd16-positive monocyte
Natural killer cell
T cell
B cell
Naive b cell
Memory b cell
Conventional dendritic cell
Immature neutrophil
Cd4-positive, alpha-beta t cell
Macrophage
Cd4-positive, cd25-positive, alpha-beta regulatory t cell
Cd8-positive, alpha-beta t cell
Naive t cell
Cd16-negative, cd56-bright natural killer cell, human
Mature neutrophil
Plasma cell
Mast cell
Eosinophil
Cd16-positive, cd56-dim natural killer cell, human
Tissue
Intercostal muscle
Developmental stage
Fourth decade stage
Seventh decade stage
Young adult stage
Sixth decade stage
Eighth decade stage
Third decade stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v2
10x 3' v3
Suspension type
Cell
Related Links
muscleageingcellatlas.org
ArrayExpress BioStudies:E-MTAB-13874
CELLxGENE
20,320 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Mus musculus
Mus musculus
Kidney loop of henle thick ascending limb epithelial cell
+12
Kidney loop of henle thick ascending limb epithelial cell
Kidney
Kidney
6-month-old stage
6-month-old stage
Normal
Normal
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Kidney loop of henle thick ascending limb epithelial cell
Kidney interstitial fibroblast
Leukocyte
Kidney proximal convoluted tubule epithelial cell
Podocyte
Kidney collecting duct principal cell
Macrophage
Blood vessel smooth muscle cell
Endothelial cell
Kidney collecting duct intercalated cell
Mesangial cell
Kidney granular cell
Kidney distal convoluted tubule epithelial cell
Tissue
Kidney
Developmental stage
6-month-old stage
Disease
Normal
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
GEO series:GSE190094
Github:marshalljamie/Kidney-Slide-seq
Github:MacoskoLab/slideseq-tools
grekalab.org
protocols.io:library-generation-using-slide-seqv2-bpgzmjx6
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