Mus musculus

Notochordal cell Spinal cord interneuron Paraxial cell Gut endothelial cell Splanchnic mesodermal cell Hemangioblast Cardiac valve cell Endodermal cell Primitive red blood cell Midbrain dopaminergic neuron Premigratory neural crest cell Mesodermal cell Neuroplacodal cell Surface ectodermal cell

Embryo

Theiler stage 14

Normal

Slide-seqv2

Homo sapiens

Natural killer cell Retinal ganglion cell Astrocyte Off-bipolar cell T cell Microglial cell B cell Pericyte Retinal cone cell Retinal pigment epithelial cell Monocyte Mueller cell Endothelial cell of vascular tree Amacrine cell Retina horizontal cell Rod bipolar cell Fibroblast Retinal rod cell

Fovea centralis

Adult stage

Normal

Female Male

10x 3' v2

Cell

Homo sapiens

Cardiac muscle myoblast Neuronal receptor cell Pericyte Cardiac endothelial cell Lymphoid lineage restricted progenitor cell Fibroblast of cardiac tissue Immature innate lymphoid cell Smooth muscle myoblast

Heart left ventricle

46-year-old stage 61-year-old stage 29-year-old stage

Myocardial infarction

Male

10x 3' v3

Nucleus

Homo sapiens

Pvalb gabaergic interneuron

Neocortex

Adult stage

Normal

Female Male

10x 3' v3

Cell

Homo sapiens

Retinal ganglion cell Off-bipolar cell Microglial cell Retinal cone cell Mueller cell Amacrine cell On-bipolar cell Retinal rod cell

Retina

42-year-old stage 80-year-old stage 53-year-old stage

Cataract Normal

Female Male

10x 3' v2

Cell

Homo sapiens

Epithelial cell

Adenocarcinoma

Starmap

Homo sapiens

Pericyte Endothelial cell of lymphatic vessel Endothelial cell Fibroblast of breast

Breast

43-year-old stage 54-year-old stage 49-year-old stage 42-year-old stage 55-year-old stage 88-year-old stage 82-year-old stage 57-year-old stage 60-year-old stage 35-year-old stage 63-year-old stage 61-year-old stage 67-year-old stage 47-year-old stage 52-year-old stage 58-year-old stage 85-year-old stage 50-year-old stage 73-year-old stage 41-year-old stage

Breast carcinoma Invasive ductal breast carcinoma Invasive lobular breast carcinoma

Female

10x 3' v2 10x 5' v1 10x 3' v3

Cell

Mus musculus

Neuron

Spinocerebellar tract Dorsal horn of spinal cord Lumbar spinal cord Spinal cord

27-day-old stage Theiler stage 27 21-day-old stage 26-day-old stage 4-week-old stage Infant stage 2-week-old stage 23-day-old stage Immature stage 25-day-old stage 22-day-old stage 2-month-old stage 24-day-old stage 1-week-old stage

Normal

Female Male

Scrb-seq 10x 3' v2 Drop-seq Fluidigm c1-based library preparation 10x 3' v1 Split-seq

Nucleus Cell

Mus musculus

Plasmacytoid dendritic cell Natural killer cell Dendritic cell Tissue-resident macrophage Regulatory t cell B cell Conventional dendritic cell Neutrophil Monocyte Malignant cell Cd4-positive, alpha-beta t cell Macrophage Cd8-positive, alpha-beta t cell Osteoclast Monocyte-derived dendritic cell Fibroblast Mast cell

Cutaneous melanoma

10x 5' transcription profiling

Mus musculus

Kidney loop of henle thick ascending limb epithelial cell Kidney interstitial fibroblast Leukocyte Kidney proximal convoluted tubule epithelial cell Macula densa epithelial cell Podocyte Kidney collecting duct principal cell Macrophage Blood vessel smooth muscle cell Endothelial cell Kidney collecting duct intercalated cell Mesangial cell Kidney distal convoluted tubule epithelial cell

Kidney

13-week-old stage

Normal

Male

Slide-seqv2

Homo sapiens

Kidney loop of henle thick ascending limb epithelial cell Kidney interstitial fibroblast Leukocyte Kidney proximal convoluted tubule epithelial cell Macula densa epithelial cell Podocyte Kidney collecting duct principal cell Macrophage Blood vessel smooth muscle cell Endothelial cell Kidney collecting duct intercalated cell Mesangial cell Kidney granular cell Kidney distal convoluted tubule epithelial cell

Cortex of kidney

54-year-old stage

Normal

Male

Slide-seqv2

Homo sapiens

Ciliated cell Secretory cell Basal cell

Respiratory basal cell

Adult stage

Normal

10x 3' v3

Cell