Danio rerio

Notochordal cell Notochordal vacuole cell Notochordal sheath cell Chondrocyte

Multicellular anatomical structure Parachordal cartilage Notochord

Segmentation:14-19 somites Hatching:pec-fin Larval:protruding-mouth Pharyngula:prim-5 Pharyngula:high-pec Hatching:long-pec Segmentation:20-25 somites Segmentation:26+ somites Pharyngula:prim-15 Pharyngula:prim-25

Normal

Sci-rna-seq3

Nucleus

Homo sapiens

Endothelial cell of artery Pericyte Endothelial cell of lymphatic vessel Smooth muscle cell Mural cell Endothelial cell of arteriole Blood vessel endothelial cell Capillary endothelial cell Vein endothelial cell

Intercostal muscle

Fourth decade stage Seventh decade stage Young adult stage Sixth decade stage Eighth decade stage Third decade stage

Normal

Female Male

10x 3' v2 10x 3' v3

Cell

Homo sapiens

M cell of gut Transit amplifying cell of small intestine Enterocyte of epithelium of small intestine Small intestine goblet cell Stem cell Enteroendocrine cell of small intestine Best4+ enterocyte Cell Paneth cell of epithelium of small intestine Tuft cell of small intestine

Small intestine

30-year-old stage

Normal

Male

10x 3' v3

Cell

Homo sapiens

Near-projecting glutamatergic cortical neuron

Dorsolateral prefrontal cortex

42-year-old stage 68-year-old stage 88-year-old stage 86-year-old stage 82-year-old stage 83-year-old stage 75-year-old stage 80-year-old stage 77-year-old stage 89-year-old stage 78-year-old stage 72-year-old stage 80 year-old and over stage 81-year-old stage 87-year-old stage 84-year-old stage 85-year-old stage 50-year-old stage 29-year-old stage 69-year-old stage 70-year-old stage

Dementia Normal

Female Male

10x multiome 10x 3' v3

Nucleus

Homo sapiens

Fibroblast

Cerebellum Hippocampal formation Brain Upper layers of the cortex Hindbrain Midbrain Pons Forebrain Head Lower layers of the cortex Hypothalamus Dorsal plus ventral thalamus Metencephalon Basal forebrain Midbrain tectum Cerebral subcortex Medulla oblongata Occipital cortex Cortex Cerebellar peduncular complex

10th week post-fertilization stage 14th week post-fertilization stage 9th week post-fertilization stage Carnegie stage 15 Carnegie stage 20 Carnegie stage 16 15th week post-fertilization stage Carnegie stage 18 13th week post-fertilization stage 12th week post-fertilization stage

Normal

10x 3' v2 10x 3' v3

Cell

Mus musculus

Kidney loop of henle thick ascending limb epithelial cell Kidney interstitial fibroblast Leukocyte Kidney proximal convoluted tubule epithelial cell Podocyte Kidney collecting duct principal cell Macrophage Blood vessel smooth muscle cell Endothelial cell Kidney collecting duct intercalated cell Mesangial cell Kidney granular cell Kidney distal convoluted tubule epithelial cell

Kidney

13-week-old stage

Diabetic kidney disease

Male

Slide-seqv2

Callithrix jacchus

Ependymal cell

Ventral thalamus Hippocampal formation Thalamic complex Medial dorsal nucleus of thalamus Posterior hypothalamic region Putamen Ventral lateral nucleus of thalamus Nucleus accumbens Dorsal thalamus Anterior hypothalamic region Lateral nuclear group of thalamus Caudate nucleus Lateral geniculate body

Late adult stage Prime adult stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Plasmacytoid dendritic cell Natural killer cell Dendritic cell B cell Non-classical monocyte Classical monocyte Mature nk t cell Cd8-positive, alpha-beta thymocyte Cd4-positive, alpha-beta thymocyte Granulocyte Effector cd4-positive, alpha-beta t cell Effector cd8-positive, alpha-beta t cell Cd141-positive myeloid dendritic cell Plasma cell Cd1c-positive myeloid dendritic cell

Peripheral zone of prostate Transition zone of prostate

31-year-old stage 74-year-old stage 72-year-old stage 67-year-old stage 81-year-old stage 29-year-old stage 73-year-old stage 71-year-old stage

Benign prostatic hyperplasia Normal

Male

10x 3' v2 10x 3' v3

Cell

Homo sapiens

Regulatory t cell B cell Malignant cell Cd8-positive, alpha-beta t cell T follicular helper cell Exhausted t cell Plasma cell Myeloid cell Cd4-positive helper t cell

Lymph node

Adult stage

Metastatic melanoma

Slide-seqv2

Homo sapiens

Natural killer cell T cell Regulatory t cell Cytotoxic t cell

Prostate gland

62-year-old stage 54-year-old stage 59-year-old stage 64-year-old stage 46-year-old stage 68-year-old stage 60-year-old stage 75-year-old stage 63-year-old stage 61-year-old stage 72-year-old stage 45-year-old stage 69-year-old stage 70-year-old stage 71-year-old stage

Prostatic acinar adenocarcinoma

Male

10x 3' v3

Cell

Homo sapiens

Kidney loop of henle thick ascending limb epithelial cell Kidney interstitial fibroblast Leukocyte Kidney proximal convoluted tubule epithelial cell Macula densa epithelial cell Podocyte Kidney collecting duct principal cell Macrophage Blood vessel smooth muscle cell Endothelial cell Kidney collecting duct intercalated cell Mesangial cell Kidney granular cell Kidney distal convoluted tubule epithelial cell

Cortex of kidney

65-year-old stage

Normal

Male

Slide-seqv2

Homo sapiens

T cell Ciliated cell Neutrophil Monocyte Macrophage Endothelial cell Pulmonary alveolar epithelial cell Fibroblast Mast cell

Cancer Tuberculosis

Seq-well