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Technology
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Cell
893
Nucleus
659
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Asap
43
Bgee
40
Cellxgene
2,077
Single cell portal
179
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Most cells
Fewest cells
2339
datasets
CELLxGENE
23,197 cells
•
Otero-Garcia et al., 2022
Molecular signatures underlying neurofibrillary tangle susceptibility in Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Inhibitory interneuron
Inhibitory interneuron
Prefrontal cortex
Prefrontal cortex
62-year-old stage
+13
62-year-old stage
Alzheimer disease
+1
Alzheimer disease
Female
+1
Female
10x 3' v2
+1
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Inhibitory interneuron
Tissue
Prefrontal cortex
Developmental stage
62-year-old stage
66-year-old stage
68-year-old stage
57-year-old stage
61-year-old stage
89-year-old stage
72-year-old stage
67-year-old stage
80 year-old and over stage
81-year-old stage
79-year-old stage
87-year-old stage
73-year-old stage
71-year-old stage
Disease
Alzheimer disease
Normal
Sex
Female
Male
Technology
10x 3' v2
10x 3' v3
Suspension type
Cell
Related Links
protocols.io:isolation-of-single-somas-from-postmortem-fresh-fr-bp2l64o2dvqe/v1
GEO series:GSE129308
CELLxGENE
23,145 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Homo sapiens
Homo sapiens
Kidney loop of henle thick ascending limb epithelial cell
+12
Kidney loop of henle thick ascending limb epithelial cell
Cortex of kidney
Cortex of kidney
64-year-old stage
64-year-old stage
Normal
Normal
Female
Female
Slide-seqv2
Slide-seqv2
Organism
Homo sapiens
Cell type
Kidney loop of henle thick ascending limb epithelial cell
Kidney interstitial fibroblast
Leukocyte
Kidney proximal convoluted tubule epithelial cell
Podocyte
Kidney collecting duct principal cell
Macrophage
Blood vessel smooth muscle cell
Endothelial cell
Kidney collecting duct intercalated cell
Mesangial cell
Kidney granular cell
Kidney distal convoluted tubule epithelial cell
Tissue
Cortex of kidney
Developmental stage
64-year-old stage
Disease
Normal
Sex
Female
Technology
Slide-seqv2
Suspension type
Related Links
Github:marshalljamie/Kidney-Slide-seq
protocols.io:library-generation-using-slide-seqv2-bpgzmjx6
Github:MacoskoLab/slideseq-tools
grekalab.org
GEO series:GSE190094
CELLxGENE
23,120 cells
•
Siletti et al., 2023
Transcriptomic diversity of cell types across the adult human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Oligodendrocyte
+24
Oligodendrocyte
Nucleus of medulla oblongata
Nucleus of medulla oblongata
42-year-old stage
+1
42-year-old stage
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Oligodendrocyte
Natural killer cell
Astrocyte
Bergmann glial cell
T cell
Microglial cell
Oligodendrocyte precursor cell
B cell
Neuron
Ependymal cell
Pericyte
Committed oligodendrocyte precursor
Monocyte
Cerebellar inhibitory gabaergic interneuron
Cerebellar granule cell
Intratelencephalic-projecting glutamatergic cortical neuron
Vascular associated smooth muscle cell
Endothelial cell
Caudal ganglionic eminence derived interneuron
Choroid plexus epithelial cell
Central nervous system macrophage
Midbrain-derived inhibitory neuron
Fibroblast
Lamp5 lhx6 neuron
Unipolar brush cell
Tissue
Nucleus of medulla oblongata
Developmental stage
42-year-old stage
50-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
Github:linnarsson-lab/adult-human-brain
Github:linnarsson-lab/auto-annotation-ah
NeMo archive:biccn/grant/u01_lein/linnarsson/transcriptome/sncell/10x_v3/human/raw
CELLxGENE
23,064 cells
•
Fernandes Matuck et al., 2024
The Immunoregulatory Architecture of the Adult Oral Cavity
Explore
h5ad
Homo sapiens
Homo sapiens
Dendritic cell
+8
Dendritic cell
Gingiva
+3
Gingiva
32-year-old stage
+17
32-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v2
+1
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Dendritic cell
Innate lymphoid cell
B cell
Neutrophil
Macrophage
Cd8-positive, alpha-beta t cell
Plasma cell
Mast cell
Cd4-positive helper t cell
Tissue
Gingiva
Soft palate
Hard palate
Buccal mucosa
Developmental stage
32-year-old stage
31-year-old stage
21-year-old stage
34-year-old stage
30-year-old stage
Seventh decade stage
24-year-old stage
57-year-old stage
28-year-old stage
33-year-old stage
35-year-old stage
61-year-old stage
39-year-old stage
26-year-old stage
Sixth decade stage
22-year-old stage
29-year-old stage
51-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v2
10x 3' v3
Suspension type
Cell
Related Links
Github:Loci-lab/Oral-Craniofacial-Atlas
CELLxGENE
22,891 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Lamp5 gabaergic interneuron
Lamp5 gabaergic interneuron
Dorsolateral prefrontal cortex
Dorsolateral prefrontal cortex
42-year-old stage
+20
42-year-old stage
Dementia
+1
Dementia
Female
+1
Female
10x multiome
+1
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Lamp5 gabaergic interneuron
Tissue
Dorsolateral prefrontal cortex
Developmental stage
42-year-old stage
68-year-old stage
88-year-old stage
86-year-old stage
82-year-old stage
83-year-old stage
75-year-old stage
80-year-old stage
77-year-old stage
89-year-old stage
78-year-old stage
72-year-old stage
80 year-old and over stage
81-year-old stage
87-year-old stage
84-year-old stage
85-year-old stage
50-year-old stage
29-year-old stage
69-year-old stage
70-year-old stage
Disease
Dementia
Normal
Sex
Female
Male
Technology
10x multiome
10x 3' v3
Suspension type
Nucleus
Related Links
Adult Changes in Thought Study
BRaIN-lab
Allen Brain Map:seattle-alzheimers-disease
AWS Open Data:allen-sea-ad-atlas
Alzheimer's Disease Research Center
AD knowledge portal:syn26223298
CELLxGENE
22,852 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Homo sapiens
Homo sapiens
Kidney loop of henle thick ascending limb epithelial cell
+12
Kidney loop of henle thick ascending limb epithelial cell
Renal medulla
Renal medulla
72-year-old stage
72-year-old stage
Normal
Normal
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Homo sapiens
Cell type
Kidney loop of henle thick ascending limb epithelial cell
Kidney interstitial fibroblast
Leukocyte
Kidney proximal convoluted tubule epithelial cell
Podocyte
Kidney collecting duct principal cell
Macrophage
Blood vessel smooth muscle cell
Endothelial cell
Kidney collecting duct intercalated cell
Mesangial cell
Kidney granular cell
Kidney distal convoluted tubule epithelial cell
Tissue
Renal medulla
Developmental stage
72-year-old stage
Disease
Normal
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
Github:marshalljamie/Kidney-Slide-seq
protocols.io:library-generation-using-slide-seqv2-bpgzmjx6
Github:MacoskoLab/slideseq-tools
grekalab.org
GEO series:GSE190094
Single Cell Portal
22,753 cells
Explore
Mus musculus
Mus musculus
Astrocyte
+4
Astrocyte
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Astrocyte
Obsolete excitatory neuron
Oligodendrocyte precursor cell
Brain microvascular endothelial cell
Obsolete inhibitory neuron
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD720) (section 247)
Corresponding registered brain section (MD720) (section 248)
Corresponding registered brain section (MD720) (section 249)
Corresponding registered brain section (MD720) (section 250)
Corresponding registered brain section (MD720) (section 251)
Corresponding registered brain section (MD720) (section 252)
CELLxGENE
22,734 cells
•
Emont et al., 2022
A single-cell atlas of human and mouse white adipose tissue
Explore
h5ad
Homo sapiens
Homo sapiens
Pericyte
+3
Pericyte
Omental fat pad
+1
Omental fat pad
49-year-old stage
+13
49-year-old stage
Normal
Normal
Female
+1
Female
Drop-seq
+1
Drop-seq
Nucleus
+1
Nucleus
Organism
Homo sapiens
Cell type
Pericyte
Endothelial cell of lymphatic vessel
Smooth muscle cell
Endothelial cell
Tissue
Omental fat pad
Subcutaneous adipose tissue
Developmental stage
49-year-old stage
59-year-old stage
68-year-old stage
24-year-old stage
57-year-old stage
35-year-old stage
36-year-old stage
58-year-old stage
53-year-old stage
29-year-old stage
73-year-old stage
51-year-old stage
41-year-old stage
71-year-old stage
Disease
Normal
Sex
Female
Male
Technology
Drop-seq
10x 3' v3
Suspension type
Nucleus
Cell
Related Links
BroadInstitute Single-Cell Portal:SCP1376
gitlab.com
GEO series:GSE176067
GEO series:GSE176171
dbGaP Study:phs002766
CELLxGENE
22,671 cells
•
The Tabula Sapiens Consortium* et al., 2022
The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans
Explore
h5ad
Homo sapiens
Homo sapiens
Plasmacytoid dendritic cell
+27
Plasmacytoid dendritic cell
Trachea
Trachea
59-year-old stage
+5
59-year-old stage
Normal
Normal
Female
+1
Female
Smart-seq2
+1
Smart-seq2
Cell
Cell
Organism
Homo sapiens
Cell type
Plasmacytoid dendritic cell
Multiciliated columnar cell of tracheobronchial tree
Natural killer cell
Innate lymphoid cell
T cell
Connective tissue cell
Serous cell of epithelium of trachea
Regulatory t cell
B cell
Non-classical monocyte
Tracheal goblet cell
Neutrophil
Monocyte
Mature nk t cell
Smooth muscle cell
Cd4-positive, alpha-beta t cell
Macrophage
Myeloid dendritic cell
Intermediate monocyte
Cd8-positive, alpha-beta t cell
Basal cell
Endothelial cell
Granulocyte
Mucus secreting cell
Ionocyte
Fibroblast
Plasma cell
Mast cell
Tissue
Trachea
Developmental stage
59-year-old stage
56-year-old stage
60-year-old stage
61-year-old stage
67-year-old stage
45-year-old stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
10x 3' v3
Suspension type
Cell
Related Links
AWS Open Data:tabula-sapiens
CZ BioHub Portal:tabula-sapiens-portal
HumanCellAtlas:10201832-7c73-4033-9b65-3ef13d81656a
UCSC Cell Browser:tabula-sapiens
DOI:10.1101/2024.12.03.626516
UCSC Genome Browser:hgTrackUi?hgsid=1437536541_FfasmBrAlAiA7oFphu1csVv0KHgc&db=hg38&c=chrX&g=tabulaSapiens
CELLxGENE
22,659 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Mus musculus
Mus musculus
Kidney loop of henle thick ascending limb epithelial cell
+12
Kidney loop of henle thick ascending limb epithelial cell
Kidney
Kidney
13-week-old stage
13-week-old stage
Diabetic kidney disease
Diabetic kidney disease
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Kidney loop of henle thick ascending limb epithelial cell
Kidney interstitial fibroblast
Leukocyte
Kidney proximal convoluted tubule epithelial cell
Podocyte
Kidney collecting duct principal cell
Macrophage
Blood vessel smooth muscle cell
Endothelial cell
Kidney collecting duct intercalated cell
Mesangial cell
Kidney granular cell
Kidney distal convoluted tubule epithelial cell
Tissue
Kidney
Developmental stage
13-week-old stage
Disease
Diabetic kidney disease
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
Github:marshalljamie/Kidney-Slide-seq
Github:MacoskoLab/slideseq-tools
grekalab.org
GEO series:GSE190094
protocols.io:library-generation-using-slide-seqv2-bpgzmjx6
CELLxGENE
22,502 cells
•
Elmentaite et al., 2020
Single-Cell Sequencing of Developing Human Gut Reveals Transcriptional Links to Childhood Crohn’s Disease
Explore
h5ad
Homo sapiens
Homo sapiens
Plasmacytoid dendritic cell
+30
Plasmacytoid dendritic cell
Ileum
Ileum
14-year-old stage
+7
14-year-old stage
Crohn disease
+1
Crohn disease
Female
+1
Female
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Plasmacytoid dendritic cell
M cell of gut
Intestine goblet cell
Intestinal tuft cell
Regulatory t cell
B cell
Endothelial cell of artery
Glial cell
Enterocyte
Memory b cell
Gamma-delta t cell
Pericyte
Iga plasma cell
Conventional dendritic cell
Endothelial cell of lymphatic vessel
Monocyte
Transit amplifying cell
Cd4-positive, alpha-beta t cell
Myofibroblast cell
Enteroendocrine cell
Cd8-positive, alpha-beta t cell
T follicular helper cell
Igg plasma cell
Dendritic cell, human
Vein endothelial cell
Intestinal crypt stem cell
Fibroblast
Plasma cell
Mast cell
Myeloid cell
Activated cd4-positive, alpha-beta t cell, human
Tissue
Ileum
Developmental stage
14-year-old stage
11-year-old stage
4-year-old stage
6-year-old stage
13-year-old stage
9-year-old stage
12-year-old stage
10-year-old stage
Disease
Crohn disease
Normal
Sex
Female
Male
Technology
10x 3' v2
Suspension type
Cell
Related Links
ArrayExpress BioStudies:E-MTAB-8901
Teichmann lab
UCSC Cell Browser:gut-cell-atlas
CELLxGENE
22,502 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Homo sapiens
Homo sapiens
Kidney loop of henle thick ascending limb epithelial cell
+8
Kidney loop of henle thick ascending limb epithelial cell
Renal medulla
Renal medulla
56-year-old stage
56-year-old stage
Normal
Normal
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Homo sapiens
Cell type
Kidney loop of henle thick ascending limb epithelial cell
Kidney interstitial fibroblast
Leukocyte
Kidney collecting duct principal cell
Macrophage
Blood vessel smooth muscle cell
Endothelial cell
Kidney collecting duct intercalated cell
Kidney distal convoluted tubule epithelial cell
Tissue
Renal medulla
Developmental stage
56-year-old stage
Disease
Normal
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
GEO series:GSE190094
protocols.io:library-generation-using-slide-seqv2-bpgzmjx6
Github:MacoskoLab/slideseq-tools
grekalab.org
Github:marshalljamie/Kidney-Slide-seq
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