Home
Data
Contribute
Stats
Resources
Metadata schema
Tools
Community
About
Contact us
Organism
0
Clear
Cell Type
0
Clear
Tissue
0
Clear
Developmental Stage
0
Clear
Disease
0
Clear
Sex
0
Clear
Technology
0
Clear
Suspension Type
0
Clear
Cell
934
Nucleus
679
Data Source
0
Clear
ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
Sort
Most cells
Fewest cells
2515
datasets
CELLxGENE
26,935 cells
•
Lazarescu et al., 2025
Human subcutaneous and visceral adipocyte atlases uncover classical and nonclassical adipocytes and depot-specific patterns
Explore
h5ad
Homo sapiens
Homo sapiens
Adipocyte of omentum tissue
Adipocyte of omentum tissue
Visceral fat
+1
Visceral fat
34-year-old stage
+12
34-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Adipocyte of omentum tissue
Tissue
Visceral fat
Visceral abdominal adipose tissue
Developmental stage
34-year-old stage
53-year-old stage
68-year-old stage
48-year-old stage
29-year-old stage
28-year-old stage
24-year-old stage
35-year-old stage
Adult stage
33-year-old stage
41-year-old stage
36-year-old stage
73-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
Zenodo code
GSE281356
HCA
ASAP
v5
26,926 cells
•
Li et al., 2022
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly
Explore
h5ad
Drosophila melanogaster
Drosophila melanogaster
Neuron
+10
Neuron
Fat body
Fat body
Day 3 of adulthood
Day 3 of adulthood
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Organism
Drosophila melanogaster
Cell type
Neuron
Fat cell
Male germline cell
Hemocyte
Epithelial cell
Adult alary muscle cell
Muscle cell
Adult neuron
Sensory neuron
Oenocyte
Adult oenocyte
Tissue
Fat body
Developmental stage
Day 3 of adulthood
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Related Links
ebi.ac.uk
CELLxGENE
26,917 cells
•
Liu et al., 2022
Spatial maps of T cell receptors and transcriptomes reveal distinct immune niches and interactions in the adaptive immune response
Explore
h5ad
Homo sapiens
Homo sapiens
Cd8-positive, alpha-beta t cell
+5
Cd8-positive, alpha-beta t cell
Tonsil
Tonsil
Adult stage
Adult stage
Normal
Normal
Slide-seqv2
Slide-seqv2
Organism
Homo sapiens
Cell type
Cd8-positive, alpha-beta t cell
Cd4-positive helper t cell
Regulatory t cell
Myeloid cell
B cell
Dendritic cell
Tissue
Tonsil
Developmental stage
Adult stage
Disease
Normal
Sex
Technology
Slide-seqv2
Suspension type
Related Links
singlecell.broadinstitute.org
github.com
CELLxGENE
26,889 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Mus musculus
Mus musculus
Podocyte
+13
Podocyte
Kidney
Kidney
13-week-old stage
13-week-old stage
Diabetic kidney disease
Diabetic kidney disease
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Podocyte
Endothelial cell
Kidney interstitial fibroblast
Blood vessel smooth muscle cell
Kidney collecting duct intercalated cell
Leukocyte
Macrophage
Kidney distal convoluted tubule epithelial cell
Kidney granular cell
Kidney collecting duct principal cell
Kidney loop of henle thick ascending limb epithelial cell
Macula densa epithelial cell
Mesangial cell
Kidney proximal convoluted tubule epithelial cell
Tissue
Kidney
Developmental stage
13-week-old stage
Disease
Diabetic kidney disease
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
ncbi.nlm.nih.gov
Kidney Slide-seq Github
protocols.io
Macosko Lab Slide-seq Github
grekalab.org
CELLxGENE
26,853 cells
•
Arutyunyan et al., 2023
Spatial multiomics map of trophoblast development in early pregnancy
Explore
h5ad
Homo sapiens
Homo sapiens
Extravillous trophoblast
+2
Extravillous trophoblast
Trophoblast
Trophoblast
Normal
Normal
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Extravillous trophoblast
Placental villous trophoblast
Syncytiotrophoblast cell
Tissue
Trophoblast
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v3
Suspension type
Cell
Related Links
Online web portal
scRNA-seq and snRNA-seq of primary tissue (E-MTAB-12421)
multiome snRNA-seq and snATAC-seq (E-MTAB-12595)
scRNA-seq and snRNA-seq of historical placental beds(EGAD00001010037)
multiome snRNA-seq and snATAC-seq of historical placental beds(EGAD00001010038)
scRNA-seq and snRNA-seq of TSCs(EGAD00001010017)
Image datasets
scRNA-seq and snucRNA-seq of human primary trophoblast organoids (PTO) and trophoblast stem cells (TSCs) differentiation into extravillous trophoblast organoids (EVTs) (E-MTAB-12650)
Spatial transcriptomics of human implantation sites, placenta and decidua (E-MTAB-12698)
CELLxGENE
26,750 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Mus musculus
Mus musculus
Podocyte
+13
Podocyte
Kidney
Kidney
13-week-old stage
13-week-old stage
Diabetic kidney disease
Diabetic kidney disease
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Podocyte
Endothelial cell
Kidney interstitial fibroblast
Blood vessel smooth muscle cell
Kidney collecting duct intercalated cell
Leukocyte
Macrophage
Kidney distal convoluted tubule epithelial cell
Kidney granular cell
Kidney collecting duct principal cell
Kidney loop of henle thick ascending limb epithelial cell
Macula densa epithelial cell
Mesangial cell
Kidney proximal convoluted tubule epithelial cell
Tissue
Kidney
Developmental stage
13-week-old stage
Disease
Diabetic kidney disease
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
ncbi.nlm.nih.gov
Kidney Slide-seq Github
protocols.io
Macosko Lab Slide-seq Github
grekalab.org
CELLxGENE
26,694 cells
•
Ulrich et al., 2024
Cellular heterogeneity and dynamics of the human uterus in healthy premenopausal women
Explore
h5ad
Homo sapiens
Homo sapiens
Stromal cell of endometrium
+15
Stromal cell of endometrium
Endometrium
+1
Endometrium
28-year-old stage
+2
28-year-old stage
Normal
Normal
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Stromal cell of endometrium
Stromal cell
Endothelial cell of venule
Perivascular cell
Uterine smooth muscle cell
Endothelial cell of artery
Leukocyte
Epithelial cell
Endothelial cell of uterus
Myoepithelial cell
Glandular secretory epithelial cell
Fibro/adipogenic progenitor cell
Ciliated epithelial cell
Circulating fibrocyte
Decidual cell
Fibroblast
Tissue
Endometrium
Myometrium
Developmental stage
28-year-old stage
32-year-old stage
31-year-old stage
Disease
Normal
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
GSE260658
E-MTAB-10287
GSE111976
CELLxGENE
26,601 cells
•
Lazarescu et al., 2025
Human subcutaneous and visceral adipocyte atlases uncover classical and nonclassical adipocytes and depot-specific patterns
Explore
h5ad
Homo sapiens
Homo sapiens
Subcutaneous adipocyte
Subcutaneous adipocyte
Subcutaneous abdominal adipose tissue
+1
Subcutaneous abdominal adipose tissue
34-year-old stage
+12
34-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Subcutaneous adipocyte
Tissue
Subcutaneous abdominal adipose tissue
Subcutaneous adipose tissue
Developmental stage
34-year-old stage
53-year-old stage
68-year-old stage
29-year-old stage
51-year-old stage
57-year-old stage
24-year-old stage
35-year-old stage
58-year-old stage
33-year-old stage
41-year-old stage
36-year-old stage
73-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
Zenodo code
GSE281356
HCA
CELLxGENE
26,554 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Mus musculus
Mus musculus
Podocyte
+13
Podocyte
Kidney
Kidney
13-week-old stage
13-week-old stage
Diabetic kidney disease
Diabetic kidney disease
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Podocyte
Endothelial cell
Kidney interstitial fibroblast
Blood vessel smooth muscle cell
Kidney collecting duct intercalated cell
Leukocyte
Macrophage
Kidney distal convoluted tubule epithelial cell
Kidney granular cell
Kidney collecting duct principal cell
Kidney loop of henle thick ascending limb epithelial cell
Macula densa epithelial cell
Mesangial cell
Kidney proximal convoluted tubule epithelial cell
Tissue
Kidney
Developmental stage
13-week-old stage
Disease
Diabetic kidney disease
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
ncbi.nlm.nih.gov
Kidney Slide-seq Github
protocols.io
Macosko Lab Slide-seq Github
grekalab.org
CELLxGENE
26,499 cells
Explore
h5ad
Homo sapiens
Homo sapiens
Cajal-retzius cell
+3
Cajal-retzius cell
Neocortex
Neocortex
Fetal stage
Fetal stage
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Cajal-retzius cell
Cerebral cortex neuron
Progenitor cell
Neuronal-restricted precursor
Tissue
Neocortex
Developmental stage
Fetal stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
CELLxGENE
26,474 cells
•
Tritschler et al., 2022
A transcriptional cross species map of pancreatic islet cells
Explore
h5ad
Homo sapiens
Homo sapiens
Pancreatic pp cell
+3
Pancreatic pp cell
Islet of langerhans
Islet of langerhans
61-year-old stage
+4
61-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Pancreatic pp cell
Pancreatic a cell
Pancreatic d cell
Type b pancreatic cell
Tissue
Islet of langerhans
Developmental stage
61-year-old stage
74-year-old stage
24-year-old stage
22-year-old stage
63-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v2
Suspension type
Cell
Related Links
GSE128565
GSE198623
Single Cell Portal
26,429 cells
Explore
rctd_cere_4_visium.rds (rds)
Mus musculus
Mus musculus
Neuron
Neuron
Normal
Normal
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Neuron
Tissue
Developmental stage
Disease
Normal
Sex
Technology
Slide-seqv2
Suspension type
1
2
…
89
90
91
92
93
…
419
420
Close
