Homo sapiens

Astrocyte Oligodendrocyte precursor cell Oligodendrocyte Leukocyte Vascular associated smooth muscle cell Fibroblast Pericyte Endothelial cell Neuron Central nervous system macrophage

Cuneus cortex

50-year-old stage 42-year-old stage 29-year-old stage

Normal

Male

10x 3' v3

Nucleus

Homo sapiens

Astrocyte Oligodendrocyte precursor cell Oligodendrocyte Leukocyte Bergmann glial cell Vascular associated smooth muscle cell Fibroblast Pericyte Endothelial cell Neuron Central nervous system macrophage

Cerebrocerebellum

50-year-old stage 42-year-old stage 29-year-old stage

Normal

Male

10x 3' v3

Nucleus

Homo sapiens

Pro-b cell Myeloid lineage restricted progenitor cell Erythroid progenitor cell Megakaryocyte-erythroid progenitor cell Common lymphoid progenitor Lymphoid lineage restricted progenitor cell Granulocyte Erythroblast Common dendritic progenitor Precursor b cell Proerythroblast Hematopoietic multipotent progenitor cell

Liver Umbilical cord blood Bone marrow

Fifth lmp month stage 14th week post-fertilization stage Fourth lmp month stage Newborn stage (0-28 days)

Normal

Female

10x 3' v3

Cell

Homo sapiens

Kidney loop of henle thick ascending limb epithelial cell Collagen secreting cell Naive b cell Igg plasma cell Classical monocyte Endothelial cell of lymphatic vessel Kidney connecting tubule principal cell Kidney loop of henle ascending limb epithelial cell Cd4-positive, alpha-beta t cell Non-classical monocyte Iga plasma cell Macrophage Naive thymus-derived cd4-positive, alpha-beta t cell Mhc-ii-positive classical monocyte Kidney distal convoluted tubule epithelial cell Kidney collecting duct principal cell Mast cell Epithelial cell Activated type ii nk t cell Renal beta-intercalated cell Epithelial cell of proximal tubule Conventional dendritic cell Fibroblast Podocyte Epithelial cell of proximal tubule segment 1 Pericyte Endothelial cell Kidney pelvis urothelial cell B cell Cd8-positive, alpha-beta t cell Cd4-positive, cd25-positive, alpha-beta regulatory t cell Renal alpha-intercalated cell Natural killer cell Epithelial cell of proximal tubule segment 3

Kidney

Eighth decade stage Fifth decade stage Seventh decade stage Sixth decade stage

Nonpapillary renal cell carcinoma

Female Male

Visium spatial gene expression v1

Mus musculus

Kidney loop of henle thick ascending limb epithelial cell Kidney granular cell Leukocyte Macrophage Kidney distal convoluted tubule epithelial cell Kidney interstitial fibroblast Kidney collecting duct principal cell Macula densa epithelial cell Blood vessel smooth muscle cell Kidney collecting duct intercalated cell Podocyte Endothelial cell Mesangial cell Kidney proximal convoluted tubule epithelial cell

Kidney

13-week-old stage

Normal

Male

Slide-seqv2

Danio rerio

Glutamatergic neuron Glial cell Gabaergic neuron Neuroblast (sensu vertebrata) Glycinergic neuron Neural progenitor cell Spinal cord interneuron

Neural rod Multicellular anatomical structure Spinal cord Hindbrain

Pharyngula:high-pec Segmentation:26+ somites Pharyngula:prim-5 Hatching:pec-fin Hatching:long-pec Segmentation:20-25 somites Segmentation:14-19 somites Larval:protruding-mouth Pharyngula:prim-15 Pharyngula:prim-25

Normal

Sci-rna-seq3

Nucleus

Homo sapiens

Cd4-positive helper t cell Malignant cell B cell Cd8-positive, alpha-beta t cell Plasma cell Regulatory t cell T follicular helper cell Exhausted t cell Myeloid cell

Lymph node

Adult stage

Metastatic melanoma

Slide-seqv2

Homo sapiens

Kidney connecting tubule epithelial cell Parietal epithelial cell Kidney distal convoluted tubule epithelial cell Kidney cortex collecting duct epithelial cell Kidney loop of henle descending limb epithelial cell Kidney loop of henle cortical thick ascending limb epithelial cell Renal beta-intercalated cell Renal principal cell Epithelial cell of proximal tubule Podocyte B cell Kidney capillary endothelial cell Mesangial cell T cell Renal alpha-intercalated cell Natural killer cell Mononuclear phagocyte

Cortex of kidney

50-year-old stage 57-year-old stage 60-year-old stage 44-year-old stage 64-year-old stage 33-year-old stage 65-year-old stage 37-year-old stage 58-year-old stage 34-year-old stage 49-year-old stage 42-year-old stage 35-year-old stage 43-year-old stage 38-year-old stage 41-year-old stage 55-year-old stage

Normal

Female Male

10x 3' v3

Cell

Homo sapiens

Adipocyte

Subcutaneous adipose tissue Visceral fat

48-year-old stage 33-year-old stage Adult stage 28-year-old stage 34-year-old stage 53-year-old stage 24-year-old stage 29-year-old stage 41-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Mus musculus

Kidney loop of henle thick ascending limb epithelial cell Kidney granular cell Leukocyte Macrophage Kidney distal convoluted tubule epithelial cell Kidney interstitial fibroblast Kidney collecting duct principal cell Macula densa epithelial cell Blood vessel smooth muscle cell Kidney collecting duct intercalated cell Podocyte Endothelial cell Mesangial cell Kidney proximal convoluted tubule epithelial cell

Kidney

13-week-old stage

Diabetic kidney disease

Male

Slide-seqv2

Homo sapiens

Mast cell Megakaryocyte-erythroid progenitor cell Megakaryocyte Double negative thymocyte Progenitor cell Hematopoietic stem cell Early t lineage precursor Erythrocyte Plasmacytoid dendritic cell Precursor b cell

Thymus Liver

9th week post-fertilization stage 6-month-old stage 15-month-old stage 3-month-old stage Fourth decade stage 13th week post-fertilization stage 12th week post-fertilization stage 10th week post-fertilization stage Carnegie stage 22 Juvenile stage (5-14 yo) 2-year-old stage 10-month-old stage 11th week post-fertilization stage 17th week post-fertilization stage 15th week post-fertilization stage Organogenesis stage Carnegie stage 19 16th week post-fertilization stage Carnegie stage 23 Third decade stage 15-19 year-old

Normal

Female Male

10x 5' v1 10x 3' v3 10x 3' v2

Cell

Danio rerio

Glutamatergic neuron Gabaergic neuron Neuroblast (sensu vertebrata) Neural progenitor cell

Midbrain-hindbrain boundary Brain Multicellular anatomical structure Midbrain tegmentum Midbrain Hindbrain Midbrain tectum

Pharyngula:high-pec Segmentation:26+ somites Pharyngula:prim-5 Hatching:pec-fin Hatching:long-pec Segmentation:20-25 somites Segmentation:14-19 somites Larval:protruding-mouth Pharyngula:prim-15 Pharyngula:prim-25

Normal

Sci-rna-seq3

Nucleus