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Cell Type
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Tissue
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Developmental Stage
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Disease
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Sex
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Technology
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Cell
890
Nucleus
655
Data Source
0
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Asap
43
Bgee
40
Cellxgene
2,066
Single cell portal
179
Sort
Most cells
Fewest cells
2328
datasets
Bgee
28,810 cells
•
Herrera-Uribe et al., 2021
Reference Transcriptomes of Porcine Peripheral Immune Cells Created Through Bulk and Single-Cell RNA Sequencing
Explore
Bulk RNA-Seq processed expression values in Sus scrofa (tsv.gz)
Sus scrofa
Sus scrofa
Antibody secreting cell
+11
Antibody secreting cell
Blood
+5
Blood
Normal
Normal
Female
+1
Female
10x genomics v2
+1
10x genomics v2
Organism
Sus scrofa
Cell type
Antibody secreting cell
Peripheral blood mononuclear cell
Cd4-positive, alpha-beta t cell
Lymphocyte
Monocyte
Conventional dendritic cell
B cell
Cd8-positive, alpha-beta t cell
Erythrocyte
Plasmacytoid dendritic cell
Natural killer cell
Gamma-delta t cell
Tissue
Blood
B cell
Gamma-delta t cell
Natural killer cell
Myeloid cell
T cell
Developmental stage
Disease
Normal
Sex
Female
Male
Technology
10x genomics v2
Illumina
Suspension type
Related Links
ncbi.nlm.nih.gov
CELLxGENE
28,724 cells
•
Siletti et al., 2023
Transcriptomic diversity of cell types across the adult human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Astrocyte
+11
Astrocyte
Hippocampal field
Hippocampal field
42-year-old stage
+1
42-year-old stage
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Astrocyte
Oligodendrocyte precursor cell
Oligodendrocyte
Leukocyte
Vascular associated smooth muscle cell
Fibroblast
Ependymal cell
Pericyte
Endothelial cell
Neuron
Central nervous system macrophage
Choroid plexus epithelial cell
Tissue
Hippocampal field
Developmental stage
42-year-old stage
29-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
NeMo archive:biccn/grant/u01_lein/linnarsson/transcriptome/sncell/10x_v3/human/raw
Github:linnarsson-lab/adult-human-brain
Github:linnarsson-lab/auto-annotation-ah
CELLxGENE
28,718 cells
•
Johansen et al., 2023
Interindividual variation in human cortical cell type abundance and expression
Explore
h5ad
Homo sapiens
Homo sapiens
Vip gabaergic interneuron
Vip gabaergic interneuron
Neocortex
Neocortex
Adult stage
Adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Vip gabaergic interneuron
Tissue
Neocortex
Developmental stage
Adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
knowledge.brain-map.org
Allen Brain Map Atlases:rnaseq/human-mtg-10x_sea-ad
NeMo archive:dat-p3eei0g
Github:AllenInstitute/human_variation
Allen Brain Map:classes/multimodal-characterization
Single Cell Portal
28,718 cells
Explore
Homo sapiens
Homo sapiens
Malignant cell
Malignant cell
Pancreatic ductal adenocarcinoma
Pancreatic ductal adenocarcinoma
Seq-well s3
Seq-well s3
Organism
Homo sapiens
Cell type
Malignant cell
Tissue
Developmental stage
Disease
Pancreatic ductal adenocarcinoma
Sex
Technology
Seq-well s3
Suspension type
CELLxGENE
28,702 cells
•
Henry et al., 2018
A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra
Explore
h5ad
Homo sapiens
Homo sapiens
Luminal cell of prostate epithelium
+8
Luminal cell of prostate epithelium
Transition zone of prostate
+1
Transition zone of prostate
31-year-old stage
+1
31-year-old stage
Normal
Normal
Male
Male
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Luminal cell of prostate epithelium
Leukocyte
Basal cell of prostate epithelium
Epithelial cell of urethra
Smooth muscle cell of prostate
Prostate gland microvascular endothelial cell
Secretory cell
Neuroendocrine cell
Fibroblast of connective tissue of prostate
Tissue
Transition zone of prostate
Peripheral zone of prostate
Developmental stage
31-year-old stage
29-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v2
Suspension type
Cell
Related Links
DOI:10.25548/W-R8CM
GEO series:GSE117403
strandlab.net
git.biohpc.swmed.edu
HumanCellAtlas:53c53cd4-8127-4e12-bc7f-8fe1610a715c
GEO series:GSE120716
UCSC Cell Browser:prostate-prostatic-urethra
CELLxGENE
28,691 cells
•
Ulrich et al., 2021
Cellular heterogeneity of human fallopian tubes in normal and hydrosalpinx disease states identified by scRNA-seq
Explore
h5ad
Homo sapiens
Homo sapiens
Myofibroblast cell
+5
Myofibroblast cell
Fimbria of fallopian tube
+3
Fimbria of fallopian tube
46-year-old stage
+3
46-year-old stage
Normal
Normal
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Myofibroblast cell
Endothelial cell of lymphatic vessel
Fibroblast
Blood vessel endothelial cell
Pericyte
Smooth muscle cell
Tissue
Fimbria of fallopian tube
Fallopian tube
Isthmus of fallopian tube
Ampulla of fallopian tube
Developmental stage
46-year-old stage
52-year-old stage
31-year-old stage
30-year-old stage
Disease
Normal
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
GEO series:GSE178101
HumanCellAtlas:21ea8ddb-525f-4f1f-a820-31f0360399a2
CELLxGENE
28,577 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Mus musculus
Mus musculus
Kidney loop of henle thick ascending limb epithelial cell
+13
Kidney loop of henle thick ascending limb epithelial cell
Kidney
Kidney
6-month-old stage
6-month-old stage
Autosomal dominant polycystic kidney disease
Autosomal dominant polycystic kidney disease
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Kidney loop of henle thick ascending limb epithelial cell
Kidney granular cell
Leukocyte
Macrophage
Kidney distal convoluted tubule epithelial cell
Kidney interstitial fibroblast
Kidney collecting duct principal cell
Macula densa epithelial cell
Blood vessel smooth muscle cell
Kidney collecting duct intercalated cell
Podocyte
Endothelial cell
Mesangial cell
Kidney proximal convoluted tubule epithelial cell
Tissue
Kidney
Developmental stage
6-month-old stage
Disease
Autosomal dominant polycystic kidney disease
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
Github:marshalljamie/Kidney-Slide-seq
protocols.io:library-generation-using-slide-seqv2-bpgzmjx6
Github:MacoskoLab/slideseq-tools
grekalab.org
GEO series:GSE190094
CELLxGENE
28,422 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Homo sapiens
Homo sapiens
Kidney loop of henle thick ascending limb epithelial cell
+12
Kidney loop of henle thick ascending limb epithelial cell
Cortex of kidney
Cortex of kidney
72-year-old stage
72-year-old stage
Normal
Normal
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Homo sapiens
Cell type
Kidney loop of henle thick ascending limb epithelial cell
Kidney granular cell
Leukocyte
Macrophage
Kidney distal convoluted tubule epithelial cell
Kidney interstitial fibroblast
Kidney collecting duct principal cell
Blood vessel smooth muscle cell
Kidney collecting duct intercalated cell
Podocyte
Endothelial cell
Mesangial cell
Kidney proximal convoluted tubule epithelial cell
Tissue
Cortex of kidney
Developmental stage
72-year-old stage
Disease
Normal
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
GEO series:GSE190094
Github:marshalljamie/Kidney-Slide-seq
protocols.io:library-generation-using-slide-seqv2-bpgzmjx6
Github:MacoskoLab/slideseq-tools
grekalab.org
ASAP
28,386 cells
•
Li et al., 2022
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly
Explore
h5ad
Drosophila melanogaster
Drosophila melanogaster
Labral sense organ mechanosensory neuron
+6
Labral sense organ mechanosensory neuron
Proboscis
+1
Proboscis
Day 5 of adulthood
Day 5 of adulthood
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Organism
Drosophila melanogaster
Cell type
Labral sense organ mechanosensory neuron
Adult somatic muscle cell
Epithelial cell
Gustatory receptor neuron of the labellum
Hemocyte
Maxillary palp olfactory receptor neuron
Tormogen cell
Tissue
Proboscis
Maxillary palp
Developmental stage
Day 5 of adulthood
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Related Links
ArrayExpress BioStudies:E-MTAB-10519
Single Cell Portal
28,301 cells
•
Jager et al., 2021
Comparative transcriptional analysis of the satellite glial cell injury response
Explore
Mus musculus
Mus musculus
Schwann cell
+9
Schwann cell
Lesion of sciatic nerve
+1
Lesion of sciatic nerve
Mixed sex
Mixed sex
10x 3' v3
10x 3' v3
Organism
Mus musculus
Cell type
Schwann cell
Innate lymphoid cell
Macrophage
Perineuronal satellite cell
Fibroblast
Pericyte
Endothelial cell
Erythrocyte
Primary neuron (sensu teleostei)
Myeloid cell
Tissue
Developmental stage
Disease
Lesion of sciatic nerve
Normal
Sex
Mixed sex
Technology
10x 3' v3
Suspension type
CELLxGENE
28,186 cells
•
Kurkalang et al., 2023
Single‐cell transcriptomic analysis of gingivo‐buccal oral cancer reveals two dominant cellular programs
Explore
h5ad
Homo sapiens
Homo sapiens
Mast cell
+6
Mast cell
Oral cavity
Oral cavity
70-year-old stage
+10
70-year-old stage
Oral cavity squamous cell carcinoma
Oral cavity squamous cell carcinoma
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Mast cell
Fibroblast
Endothelial cell
B cell
Oral mucosa squamous cell
T cell
Myeloid cell
Tissue
Oral cavity
Developmental stage
70-year-old stage
50-year-old stage
76-year-old stage
62-year-old stage
46-year-old stage
60-year-old stage
65-year-old stage
36-year-old stage
49-year-old stage
38-year-old stage
55-year-old stage
Disease
Oral cavity squamous cell carcinoma
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
GEO series:GSE215403
CELLxGENE
28,155 cells
•
Siletti et al., 2023
Transcriptomic diversity of cell types across the adult human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Astrocyte
+12
Astrocyte
Mammillary body
Mammillary body
50-year-old stage
+2
50-year-old stage
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Astrocyte
Oligodendrocyte precursor cell
Oligodendrocyte
Leukocyte
Bergmann glial cell
Vascular associated smooth muscle cell
Fibroblast
Ependymal cell
Pericyte
Endothelial cell
Neuron
Central nervous system macrophage
Choroid plexus epithelial cell
Tissue
Mammillary body
Developmental stage
50-year-old stage
42-year-old stage
29-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
Github:linnarsson-lab/adult-human-brain
Github:linnarsson-lab/auto-annotation-ah
NeMo archive:biccn/grant/u01_lein/linnarsson/transcriptome/sncell/10x_v3/human/raw
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