Mus musculus

Germ cell Supporting cell Leukocyte Epithelial cell Skeletal muscle fiber Leydig cell Sertoli cell Pericyte Endothelial cell Mesenchymal cell Erythrocyte Neural cell

Gonad

Theiler stage 21 Theiler stage 20 Theiler stage 19

Normal

Male

10x 5' v1

Cell

Homo sapiens

Astrocyte Oligodendrocyte precursor cell Oligodendrocyte Leukocyte Vascular associated smooth muscle cell Fibroblast Pericyte Endothelial cell Neuron Central nervous system macrophage

Primary auditory cortex

50-year-old stage 42-year-old stage 29-year-old stage

Normal

Male

10x 3' v3

Nucleus

Homo sapiens

Astrocyte Oligodendrocyte precursor cell Oligodendrocyte Leukocyte Vascular associated smooth muscle cell Fibroblast Pericyte Endothelial cell Neuron Central nervous system macrophage

Lateral entorhinal cortex

50-year-old stage 42-year-old stage 29-year-old stage

Normal

Male

10x 3' v3

Nucleus

Mus musculus

Kidney loop of henle thick ascending limb epithelial cell Kidney granular cell Leukocyte Macrophage Kidney distal convoluted tubule epithelial cell Kidney interstitial fibroblast Kidney collecting duct principal cell Macula densa epithelial cell Blood vessel smooth muscle cell Kidney collecting duct intercalated cell Podocyte Endothelial cell Mesangial cell Kidney proximal convoluted tubule epithelial cell

Kidney

13-week-old stage

Diabetic kidney disease

Male

Slide-seqv2

Homo sapiens

Astrocyte Oligodendrocyte precursor cell Oligodendrocyte Leukocyte Vascular associated smooth muscle cell Fibroblast Ependymal cell Pericyte Endothelial cell Neuron Central nervous system macrophage

Body of caudate nucleus

50-year-old stage 42-year-old stage 29-year-old stage

Normal

Male

10x 3' v3

Nucleus

Homo sapiens

Astrocyte Oligodendrocyte precursor cell Oligodendrocyte Leukocyte Vascular associated smooth muscle cell Fibroblast Pericyte Endothelial cell Neuron Central nervous system macrophage

Extrastriate cortex

50-year-old stage 42-year-old stage 29-year-old stage

Normal

Male

10x 3' v3

Nucleus

Mus musculus

Schwann cell Oligodendrocyte precursor cell Oligodendrocyte

Spinal cord

3-6 month-old mature stage

Normal Spinal cord injury

Female

10x 3' v2

Nucleus

Homo sapiens

Naive b cell Innate lymphoid cell Macrophage Mature b cell Tonsil germinal center b cell Cd4-positive helper t cell T follicular regulatory cell Plasmablast Cd8-positive, alpha-beta cytotoxic t cell Conventional dendritic cell Central memory cd4-positive, alpha-beta t cell Central memory cd8-positive, alpha-beta t cell Follicular dendritic cell Centroblast Regulatory t cell T cell Memory b cell Plasmacytoid dendritic cell Centrocyte T follicular helper cell Natural killer cell Myeloid cell

Tonsil

6-year-old stage 3-year-old stage 9-year-old stage 5-year-old stage

Normal

Female Male

10x 5' v1 10x 3' v2

Cell

Homo sapiens

Inflammatory macrophage Ionocyte Macrophage Mast cell Basal cell Enteroendocrine cell Cd8-positive, alpha-beta cytotoxic t cell Nasal mucosa goblet cell Multiciliated epithelial cell Erythroblast B cell Cd8-positive, alpha-beta t cell Squamous epithelial cell Dendritic cell T cell Plasmacytoid dendritic cell Secretory cell Ciliated cell

Nasopharynx

Fourth decade stage Eighth decade stage Ninth decade stage Fifth decade stage Seventh decade stage Third decade stage Sixth decade stage

Normal Long covid-19 Respiratory failure Covid-19

Female Male

Seq-well s3

Cell

Homo sapiens

Oligodendrocyte precursor cell

Middle temporal gyrus

80-year-old stage 85-year-old stage 82-year-old stage 70-year-old stage 77-year-old stage 50-year-old stage 86-year-old stage 60-year-old stage 80 year-old and over stage 89-year-old stage 65-year-old stage 75-year-old stage Adult stage 78-year-old stage 68-year-old stage 72-year-old stage 88-year-old stage 84-year-old stage 69-year-old stage 43-year-old stage 29-year-old stage 87-year-old stage 81-year-old stage 83-year-old stage

Normal Dementia

Female Male

10x 3' v3 10x multiome

Nucleus

Homo sapiens

Transit amplifying cell of small intestine Innate lymphoid cell Endothelial cell of lymphatic vessel Glial cell Smooth muscle fiber of ileum Enteroendocrine cell of small intestine Mast cell Progenitor cell Ileal goblet cell Fibroblast Enterocyte of epithelium proper of ileum Pericyte Endothelial cell Alpha-beta t cell Paneth cell of epithelium of small intestine B cell Plasma cell Mononuclear phagocyte

Ileum

Prime adult stage

Normal

10x 3' v1 10x 3' v2

Cell

Homo sapiens

Mucosal invariant t cell Cd16-negative, cd56-bright natural killer cell, human Natural killer cell Gamma-delta t cell

Blood

Fourth decade stage Fifth decade stage Seventh decade stage Sixth decade stage

Normal Covid-19

Female Male

10x 5' v2 10x 5' v1

Cell