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890
Nucleus
655
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Asap
43
Bgee
40
Cellxgene
2,066
Single cell portal
179
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Most cells
Fewest cells
2328
datasets
CELLxGENE
35,359 cells
•
Siletti et al., 2023
Transcriptomic diversity of cell types across the adult human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Astrocyte
+9
Astrocyte
Brodmann (1909) area 23
Brodmann (1909) area 23
50-year-old stage
+2
50-year-old stage
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Astrocyte
Oligodendrocyte precursor cell
Oligodendrocyte
Leukocyte
Vascular associated smooth muscle cell
Fibroblast
Pericyte
Endothelial cell
Neuron
Central nervous system macrophage
Tissue
Brodmann (1909) area 23
Developmental stage
50-year-old stage
42-year-old stage
29-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
NeMo archive:biccn/grant/u01_lein/linnarsson/transcriptome/sncell/10x_v3/human/raw
Github:linnarsson-lab/adult-human-brain
Github:linnarsson-lab/auto-annotation-ah
CELLxGENE
35,350 cells
•
Siletti et al., 2023
Transcriptomic diversity of cell types across the adult human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Astrocyte
+10
Astrocyte
Dentate gyrus of hippocampal formation
Dentate gyrus of hippocampal formation
42-year-old stage
+1
42-year-old stage
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Astrocyte
Oligodendrocyte precursor cell
Oligodendrocyte
Leukocyte
Vascular associated smooth muscle cell
Fibroblast
Ependymal cell
Pericyte
Endothelial cell
Neuron
Central nervous system macrophage
Tissue
Dentate gyrus of hippocampal formation
Developmental stage
42-year-old stage
29-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
Github:linnarsson-lab/adult-human-brain
NeMo archive:biccn/grant/u01_lein/linnarsson/transcriptome/sncell/10x_v3/human/raw
Github:linnarsson-lab/auto-annotation-ah
CELLxGENE
35,290 cells
•
Siletti et al., 2023
Transcriptomic diversity of cell types across the adult human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Astrocyte
+10
Astrocyte
Superior parietal cortex
Superior parietal cortex
50-year-old stage
+2
50-year-old stage
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Astrocyte
Oligodendrocyte precursor cell
Oligodendrocyte
Leukocyte
Vascular associated smooth muscle cell
Fibroblast
Pericyte
Endothelial cell
Neuron
Central nervous system macrophage
Choroid plexus epithelial cell
Tissue
Superior parietal cortex
Developmental stage
50-year-old stage
42-year-old stage
29-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
NeMo archive:biccn/grant/u01_lein/linnarsson/transcriptome/sncell/10x_v3/human/raw
Github:linnarsson-lab/adult-human-brain
Github:linnarsson-lab/auto-annotation-ah
CELLxGENE
35,285 cells
•
Siletti et al., 2023
Transcriptomic diversity of cell types across the adult human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Astrocyte
+10
Astrocyte
Basolateral amygdaloid nuclear complex
Basolateral amygdaloid nuclear complex
50-year-old stage
+2
50-year-old stage
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Astrocyte
Oligodendrocyte precursor cell
Oligodendrocyte
Leukocyte
Vascular associated smooth muscle cell
Fibroblast
Ependymal cell
Pericyte
Endothelial cell
Neuron
Central nervous system macrophage
Tissue
Basolateral amygdaloid nuclear complex
Developmental stage
50-year-old stage
42-year-old stage
29-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
Github:linnarsson-lab/adult-human-brain
Github:linnarsson-lab/auto-annotation-ah
NeMo archive:biccn/grant/u01_lein/linnarsson/transcriptome/sncell/10x_v3/human/raw
CELLxGENE
35,214 cells
•
Wu et al., 2021
A single-cell and spatially resolved atlas of human breast cancers
Explore
h5ad
Homo sapiens
Homo sapiens
Cd4-positive, alpha-beta t cell
+4
Cd4-positive, alpha-beta t cell
Breast
Breast
85-year-old stage
+19
85-year-old stage
Invasive ductal breast carcinoma
+2
Invasive ductal breast carcinoma
Female
Female
10x 5' v1
+2
10x 5' v1
Cell
Cell
Organism
Homo sapiens
Cell type
Cd4-positive, alpha-beta t cell
Cd8-positive, alpha-beta t cell
Mature nk t cell
T cell
Natural killer cell
Tissue
Breast
Developmental stage
85-year-old stage
82-year-old stage
50-year-old stage
57-year-old stage
52-year-old stage
60-year-old stage
67-year-old stage
63-year-old stage
54-year-old stage
47-year-old stage
58-year-old stage
61-year-old stage
49-year-old stage
42-year-old stage
35-year-old stage
73-year-old stage
88-year-old stage
43-year-old stage
41-year-old stage
55-year-old stage
Disease
Invasive ductal breast carcinoma
Invasive lobular breast carcinoma
Breast carcinoma
Sex
Female
Technology
10x 5' v1
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
Github:Swarbricklab-code/BrCa_cell_atlas
GEO series:GSE176078
EGA Study:EGAS00001005173
Zenodo record:4739739
BroadInstitute Single-Cell Portal:SCP1039/a-single-cell-and-spatially-resolved-atlas-of-human-breast-cancers
CELLxGENE
35,171 cells
•
Johansen et al., 2023
Interindividual variation in human cortical cell type abundance and expression
Explore
h5ad
Homo sapiens
Homo sapiens
L2/3-6 intratelencephalic projecting glutamatergic neuron
L2/3-6 intratelencephalic projecting glutamatergic neuron
Neocortex
Neocortex
Adult stage
Adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
L2/3-6 intratelencephalic projecting glutamatergic neuron
Tissue
Neocortex
Developmental stage
Adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
knowledge.brain-map.org
Allen Brain Map Atlases:rnaseq/human-mtg-10x_sea-ad
Allen Brain Map:classes/multimodal-characterization
NeMo archive:dat-p3eei0g
Github:AllenInstitute/human_variation
CELLxGENE
35,132 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Mus musculus
Mus musculus
Kidney loop of henle thick ascending limb epithelial cell
+13
Kidney loop of henle thick ascending limb epithelial cell
Kidney
Kidney
13-week-old stage
13-week-old stage
Normal
Normal
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Kidney loop of henle thick ascending limb epithelial cell
Kidney granular cell
Leukocyte
Macrophage
Kidney distal convoluted tubule epithelial cell
Kidney interstitial fibroblast
Kidney collecting duct principal cell
Macula densa epithelial cell
Blood vessel smooth muscle cell
Kidney collecting duct intercalated cell
Podocyte
Endothelial cell
Mesangial cell
Kidney proximal convoluted tubule epithelial cell
Tissue
Kidney
Developmental stage
13-week-old stage
Disease
Normal
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
Github:marshalljamie/Kidney-Slide-seq
protocols.io:library-generation-using-slide-seqv2-bpgzmjx6
Github:MacoskoLab/slideseq-tools
grekalab.org
GEO series:GSE190094
Bgee
35,080 cells
•
Fink et al., 2022
Single-cell and spatial mapping Identify cell types and signaling Networks in the human ureter
Explore
scRNA-Seq droplet-based processed expression values per cell population in Homo sapiens (tsv.gz)
scRNA-Seq droplet-based H5AD data per cell in Homo sapiens (h5ad)
Homo sapiens
Homo sapiens
Ureter smooth muscle cell
+11
Ureter smooth muscle cell
Ureter
Ureter
85-year-old stage
+8
85-year-old stage
Normal
Normal
Female
+1
Female
10x genomics v3
10x genomics v3
Organism
Homo sapiens
Cell type
Ureter smooth muscle cell
Basal cell of urothelium
Cytotoxic t cell
Leukocyte
Mast cell
Monocyte
Fibroblast
Endothelial cell
B cell
Ureter urothelial cell
T cell
Natural killer cell
Tissue
Ureter
Developmental stage
85-year-old stage
82-year-old stage
79-year-old stage
74-year-old stage
65-year-old stage
75-year-old stage
68-year-old stage
69-year-old stage
81-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x genomics v3
Suspension type
Related Links
SRA Project:SRP337049
ASAP
35,050 cells
•
Li et al., 2022
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly
Explore
h5ad
Drosophila melanogaster
Drosophila melanogaster
Muscle cell
+6
Muscle cell
Ovary
Ovary
Day 5 of adulthood
Day 5 of adulthood
Normal
Normal
Female
Female
10x 3' v3
10x 3' v3
Organism
Drosophila melanogaster
Cell type
Muscle cell
Stalk follicle cell
Escort cell
Dorsal appendage forming follicle cell
Ovarian sheath muscle cell
Stretch follicle cell
Polar follicle cell
Tissue
Ovary
Developmental stage
Day 5 of adulthood
Disease
Normal
Sex
Female
Technology
10x 3' v3
Suspension type
Related Links
ArrayExpress BioStudies:E-MTAB-10519
Bgee
34,984 cells
•
Ung et al., 2021
Olfactory bulb astrocytes mediate sensory circuit processing through Sox9 in the mouse brain
Explore
scRNA-Seq droplet-based processed expression values per cell population in Mus musculus (tsv.gz)
scRNA-Seq droplet-based H5AD data per cell in Mus musculus (h5ad)
Mus musculus
Mus musculus
Mural cell
+11
Mural cell
Olfactory bulb
Olfactory bulb
3-6 month-old mature stage
3-6 month-old mature stage
Normal
Normal
Mixed sex
Mixed sex
10x genomics v2
10x genomics v2
Organism
Mus musculus
Cell type
Mural cell
Astrocyte
Oligodendrocyte precursor cell
Oligodendrocyte
Macrophage
Monocyte
Olfactory ensheathing cell
Microglial cell
Blood vessel endothelial cell
Mesenchymal cell
Erythrocyte
Neuron
Tissue
Olfactory bulb
Developmental stage
3-6 month-old mature stage
Disease
Normal
Sex
Mixed sex
Technology
10x genomics v2
Suspension type
Related Links
SRA Project:SRP167086
CELLxGENE
34,949 cells
•
Siletti et al., 2023
Transcriptomic diversity of cell types across the adult human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Astrocyte
+9
Astrocyte
Agranular insular cortex
Agranular insular cortex
50-year-old stage
+2
50-year-old stage
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Astrocyte
Oligodendrocyte precursor cell
Oligodendrocyte
Leukocyte
Vascular associated smooth muscle cell
Fibroblast
Pericyte
Endothelial cell
Neuron
Central nervous system macrophage
Tissue
Agranular insular cortex
Developmental stage
50-year-old stage
42-year-old stage
29-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
NeMo archive:biccn/grant/u01_lein/linnarsson/transcriptome/sncell/10x_v3/human/raw
Github:linnarsson-lab/adult-human-brain
Github:linnarsson-lab/auto-annotation-ah
CELLxGENE
34,934 cells
Explore
h5ad
Homo sapiens
Homo sapiens
Capillary endothelial cell
+3
Capillary endothelial cell
Optic disc
+1
Optic disc
85-year-old stage
+46
85-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Capillary endothelial cell
Endothelial cell of venule
Blood vessel endothelial cell
Fenestrated endothelial cell
Tissue
Optic disc
Cranial nerve ii
Developmental stage
85-year-old stage
82-year-old stage
16-year-old stage
70-year-old stage
18-year-old stage
77-year-old stage
21-year-old stage
32-year-old stage
50-year-old stage
76-year-old stage
62-year-old stage
46-year-old stage
52-year-old stage
60-year-old stage
64-year-old stage
45-year-old stage
25-year-old stage
74-year-old stage
33-year-old stage
65-year-old stage
67-year-old stage
75-year-old stage
27-year-old stage
37-year-old stage
71-year-old stage
63-year-old stage
54-year-old stage
47-year-old stage
56-year-old stage
58-year-old stage
68-year-old stage
61-year-old stage
15-year-old stage
34-year-old stage
42-year-old stage
53-year-old stage
10-year-old stage
17-year-old stage
72-year-old stage
30-year-old stage
3-year-old stage
Newborn stage (0-28 days)
69-year-old stage
43-year-old stage
90 year-old and over stage
81-year-old stage
11-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
celltype.info
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