Home
Data
Contribute
Stats
Resources
Metadata schema
Tools
Community
About
Contact us
Organism
0
Clear
Cell Type
0
Clear
Tissue
0
Clear
Developmental Stage
0
Clear
Disease
0
Clear
Sex
0
Clear
Technology
0
Clear
Suspension Type
0
Clear
Cell
890
Nucleus
655
Data Source
0
Clear
Asap
43
Bgee
40
Cellxgene
2,066
Single cell portal
179
Sort
Most cells
Fewest cells
2328
datasets
CELLxGENE
37,193 cells
•
Liu et al., 2022
Spatial maps of T cell receptors and transcriptomes reveal distinct immune niches and interactions in the adaptive immune response
Explore
h5ad
Homo sapiens
Homo sapiens
Cd4-positive helper t cell
+8
Cd4-positive helper t cell
Lymph node
Lymph node
Adult stage
Adult stage
Metastatic melanoma
Metastatic melanoma
Slide-seqv2
Slide-seqv2
Organism
Homo sapiens
Cell type
Cd4-positive helper t cell
Malignant cell
B cell
Cd8-positive, alpha-beta t cell
Plasma cell
Regulatory t cell
T follicular helper cell
Exhausted t cell
Myeloid cell
Tissue
Lymph node
Developmental stage
Adult stage
Disease
Metastatic melanoma
Sex
Technology
Slide-seqv2
Suspension type
Related Links
Github:soph-liu/Slide-TCR-seq
BroadInstitute Single-Cell Portal:SCP1348/slide-tcr-seq-data
CELLxGENE
37,121 cells
•
Chien et al., 2024
Cell-type-specific effects of age and sex on human cortical neurons
Explore
h5ad
Homo sapiens
Homo sapiens
L2/3 intratelencephalic projecting glutamatergic neuron
+14
L2/3 intratelencephalic projecting glutamatergic neuron
Brodmann (1909) area 46
Brodmann (1909) area 46
70-year-old stage
+6
70-year-old stage
Normal
Normal
Female
+1
Female
Mct-seq
Mct-seq
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
L2/3 intratelencephalic projecting glutamatergic neuron
L6 intratelencephalic projecting glutamatergic neuron
L3 intratelencephalic projecting glutamatergic neuron
Astrocyte
Oligodendrocyte
L6 corticothalamic-projecting glutamatergic cortical neuron
Near-projecting glutamatergic cortical neuron
L4/5 intratelencephalic projecting glutamatergic neuron
Sst gabaergic interneuron
Microglial cell
Lamp5 gabaergic interneuron
L6b glutamatergic cortical neuron
L5 extratelencephalic projecting glutamatergic cortical neuron
Vip gabaergic interneuron
Pvalb gabaergic interneuron
Tissue
Brodmann (1909) area 46
Developmental stage
70-year-old stage
25-year-old stage
74-year-old stage
23-year-old stage
71-year-old stage
73-year-old stage
30-year-old stage
Disease
Normal
Sex
Female
Male
Technology
Mct-seq
Suspension type
Nucleus
Related Links
protocols.io:snmcat-v1-n92ld914xg5b/v1
CELLxGENE
37,100 cells
•
Guerrero-Murillo et al., 2024
Integrative single-cell multi-omics of CD19-CAR <sup>pos</sup> and CAR <sup>neg</sup> T cells suggest drivers of immunotherapy response in B-cell neoplasias
Explore
h5ad
Homo sapiens
Homo sapiens
Naive thymus-derived cd4-positive, alpha-beta t cell
+6
Naive thymus-derived cd4-positive, alpha-beta t cell
Blood
+1
Blood
Adult stage
Adult stage
B-cell acute lymphoblastic leukemia
B-cell acute lymphoblastic leukemia
Female
+1
Female
10x 5' v1
10x 5' v1
Cell
Cell
Organism
Homo sapiens
Cell type
Naive thymus-derived cd4-positive, alpha-beta t cell
Effector cd8-positive, alpha-beta t cell
Cd8-positive, alpha-beta cytotoxic t cell
Central memory cd4-positive, alpha-beta t cell
Effector memory cd8-positive, alpha-beta t cell
T cell
Gamma-delta t cell
Tissue
Blood
T cell
Developmental stage
Adult stage
Disease
B-cell acute lymphoblastic leukemia
Sex
Female
Male
Technology
10x 5' v1
Suspension type
Cell
Related Links
GEO series:GSE235760
CELLxGENE
36,941 cells
•
Siletti et al., 2023
Transcriptomic diversity of cell types across the adult human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Astrocyte
+9
Astrocyte
Piriform cortex
Piriform cortex
50-year-old stage
+2
50-year-old stage
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Astrocyte
Oligodendrocyte precursor cell
Oligodendrocyte
Leukocyte
Vascular associated smooth muscle cell
Fibroblast
Pericyte
Endothelial cell
Neuron
Central nervous system macrophage
Tissue
Piriform cortex
Developmental stage
50-year-old stage
42-year-old stage
29-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
NeMo archive:biccn/grant/u01_lein/linnarsson/transcriptome/sncell/10x_v3/human/raw
Github:linnarsson-lab/adult-human-brain
Github:linnarsson-lab/auto-annotation-ah
CELLxGENE
36,886 cells
•
Siletti et al., 2023
Transcriptomic diversity of cell types across the adult human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Astrocyte
+10
Astrocyte
Hippocampal field
Hippocampal field
50-year-old stage
+2
50-year-old stage
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Astrocyte
Oligodendrocyte precursor cell
Oligodendrocyte
Leukocyte
Vascular associated smooth muscle cell
Fibroblast
Ependymal cell
Pericyte
Endothelial cell
Neuron
Central nervous system macrophage
Tissue
Hippocampal field
Developmental stage
50-year-old stage
42-year-old stage
29-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
NeMo archive:biccn/grant/u01_lein/linnarsson/transcriptome/sncell/10x_v3/human/raw
Github:linnarsson-lab/adult-human-brain
Github:linnarsson-lab/auto-annotation-ah
CELLxGENE
36,785 cells
•
Liu et al., 2022
Spatial maps of T cell receptors and transcriptomes reveal distinct immune niches and interactions in the adaptive immune response
Explore
h5ad
Homo sapiens
Homo sapiens
Cd4-positive helper t cell
+8
Cd4-positive helper t cell
Lymph node
Lymph node
Adult stage
Adult stage
Metastatic melanoma
Metastatic melanoma
Slide-seqv2
Slide-seqv2
Organism
Homo sapiens
Cell type
Cd4-positive helper t cell
Malignant cell
B cell
Cd8-positive, alpha-beta t cell
Plasma cell
Regulatory t cell
T follicular helper cell
Exhausted t cell
Myeloid cell
Tissue
Lymph node
Developmental stage
Adult stage
Disease
Metastatic melanoma
Sex
Technology
Slide-seqv2
Suspension type
Related Links
BroadInstitute Single-Cell Portal:SCP1348/slide-tcr-seq-data
Github:soph-liu/Slide-TCR-seq
Single Cell Portal
36,740 cells
Explore
Homo sapiens
Homo sapiens
Macrophage
+13
Macrophage
Chronic rhinitis
+1
Chronic rhinitis
Seq-well
Seq-well
Organism
Homo sapiens
Cell type
Macrophage
Glandular secretory epithelial cell
Mast cell
Basal cell of olfactory epithelium
Neutrophil
Fibroblast
Endothelial cell
Plasma cell
T cell
Secretory cell
Eosinophil
Ciliated cell
Myeloid cell
Goblet cell
Tissue
Developmental stage
Disease
Chronic rhinitis
Respiratory system disorder
Sex
Technology
Seq-well
Suspension type
CELLxGENE
36,639 cells
Explore
h5ad
Homo sapiens
Homo sapiens
Erythroid progenitor cell
+2
Erythroid progenitor cell
Meninx
+2
Meninx
9th week post-fertilization stage
+8
9th week post-fertilization stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Erythroid progenitor cell
Reticulocyte
Erythroblast
Tissue
Meninx
Brain meninx
Forebrain meninges
Developmental stage
9th week post-fertilization stage
13th week post-fertilization stage
12th week post-fertilization stage
10th week post-fertilization stage
Carnegie stage 23
Carnegie stage 21
Carnegie stage 20
Carnegie stage 18
Carnegie stage 16
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
Github:linnarsson-lab/human-meninges-development
Single Cell Portal
36,560 cells
Explore
🔧
Cell type:
Invalid ontology prefix 'UBERON'. Expected one of: CL, FBbt, WBbt, ZFA
Mus musculus
Mus musculus
Kidney interstitial cell
+7
Kidney interstitial cell
Normal
+1
Normal
Obsolete_10x v2
Obsolete_10x v2
Organism
Mus musculus
Cell type
Kidney interstitial cell
Kidney tubule cell
Renal beta-intercalated cell
Renal principal cell
Podocyte
Endothelial cell
Kidney epithelial cell
Renal alpha-intercalated cell
Tissue
Developmental stage
Disease
Normal
Coenzyme q10 deficiency, primary, 3
Sex
Technology
Obsolete_10x v2
Suspension type
Bgee
36,362 cells
•
James et al., 2020
Distinct microbial and immune niches of the human colon
Explore
scRNA-Seq droplet-based processed expression values per cell population in Homo sapiens (tsv.gz)
scRNA-Seq droplet-based H5AD data per cell in Homo sapiens (h5ad)
Homo sapiens
Homo sapiens
Activated cd4-positive, alpha-beta t cell, human
+21
Activated cd4-positive, alpha-beta t cell, human
Mesenteric lymph node
+3
Mesenteric lymph node
Fifth decade stage
+2
Fifth decade stage
Normal
Normal
Female
+1
Female
10x genomics v2
10x genomics v2
Organism
Homo sapiens
Cell type
Activated cd4-positive, alpha-beta t cell, human
Cd11b-positive dendritic cell
Follicular b cell
Innate lymphoid cell
Lymph node macrophage
Macrophage
T-helper 1 cell
Mast cell
Monocyte
Memory t cell
Colon macrophage
Conventional dendritic cell
T-helper 17 cell
B cell
Cd8-positive, alpha-beta t cell
Dendritic cell
Regulatory t cell
Memory b cell
Plasmacytoid dendritic cell
T follicular helper cell
Natural killer cell
Gamma-delta t cell
Tissue
Mesenteric lymph node
Caecum
Transverse colon
Sigmoid colon
Developmental stage
Fifth decade stage
Seventh decade stage
Sixth decade stage
Disease
Normal
Sex
Female
Male
Technology
10x genomics v2
Suspension type
Related Links
ebi.ac.uk
CELLxGENE
36,359 cells
•
Egozi et al., 2021
Insulin is expressed by enteroendocrine cells during human fetal development
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell of lymphatic vessel
+9
Endothelial cell of lymphatic vessel
Small intestine
Small intestine
20th week post-fertilization stage
+2
20th week post-fertilization stage
Normal
Normal
Female
Female
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Endothelial cell of lymphatic vessel
Macrophage
Enteroendocrine cell
Fibroblast
Blood vessel endothelial cell
B cell
Dendritic cell
T cell
Enterocyte
Neuron
Tissue
Small intestine
Developmental stage
20th week post-fertilization stage
22nd week post-fertilization stage
Newborn stage (0-28 days)
Disease
Normal
Sex
Female
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
DOI:10.5281/zenodo.5457926
CELLxGENE
36,313 cells
•
Chen et al., 2022
Single-cell multiomics reveals increased plasticity, resistant populations, and stem-cell–like blasts in <i>KMT2A</i>-rearranged leukemia
Explore
h5ad
Homo sapiens
Homo sapiens
Mature b cell
+13
Mature b cell
Blood
Blood
6-month-old stage
+10
6-month-old stage
B-cell acute lymphoblastic leukemia
B-cell acute lymphoblastic leukemia
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Mature b cell
Naive thymus-derived cd4-positive, alpha-beta t cell
Cd14-positive, cd16-positive monocyte
Cd14-positive monocyte
Cd8-positive, alpha-beta cytotoxic t cell
Conventional dendritic cell
Naive thymus-derived cd8-positive, alpha-beta t cell
Central memory cd4-positive, alpha-beta t cell
Effector memory cd8-positive, alpha-beta t cell
Plasmacytoid dendritic cell
Natural killer cell
Cd16-positive, cd56-dim natural killer cell, human
Exhausted t cell
Cd56-positive, cd161-positive immature natural killer cell, human
Tissue
Blood
Developmental stage
6-month-old stage
3-month-old stage
4-month-old stage
11-month-old stage
10-month-old stage
1-month-old stage
8-month-old stage
2-month-old stage
7-month-old stage
9-month-old stage
Newborn stage (0-28 days)
Disease
B-cell acute lymphoblastic leukemia
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
Github:tanlabcode/KMT2Ar_Paper
humantumoratlas.org
dbGaP Study:phs002371
1
2
…
68
69
70
71
72
…
387
388
Close