Homo sapiens

Cd1c-positive myeloid dendritic cell Naive b cell Innate lymphoid cell Cd4-positive, alpha-beta t cell Platelet Double negative t regulatory cell Mature b cell Naive thymus-derived cd4-positive, alpha-beta t cell Mucosal invariant t cell Effector memory cd4-positive, alpha-beta t cell Cd141-positive myeloid dendritic cell Cd16-negative, cd56-bright natural killer cell, human Monocyte Cd14-positive monocyte Cd8-positive, alpha-beta cytotoxic t cell Cd8-positive, alpha-beta memory t cell Conventional dendritic cell Naive thymus-derived cd8-positive, alpha-beta t cell Central memory cd4-positive, alpha-beta t cell B cell Cd8-positive, alpha-beta t cell Cd4-positive, alpha-beta cytotoxic t cell Dendritic cell Plasma cell Erythrocyte Regulatory t cell T cell Memory b cell Plasmacytoid dendritic cell Cd14-low, cd16-positive monocyte Natural killer cell Gamma-delta t cell Cd16-positive, cd56-dim natural killer cell, human

Blood

66-year-old stage 19-year-old stage 21-year-old stage 32-year-old stage 50-year-old stage 57-year-old stage 62-year-old stage 46-year-old stage 52-year-old stage 60-year-old stage 22-year-old stage 44-year-old stage 48-year-old stage 64-year-old stage 45-year-old stage 25-year-old stage 33-year-old stage 65-year-old stage 67-year-old stage 40-year-old stage 75-year-old stage 27-year-old stage 23-year-old stage 37-year-old stage 71-year-old stage 28-year-old stage 36-year-old stage 63-year-old stage 59-year-old stage 54-year-old stage 47-year-old stage 31-year-old stage 56-year-old stage 58-year-old stage 68-year-old stage 61-year-old stage 34-year-old stage 51-year-old stage 49-year-old stage 42-year-old stage 35-year-old stage 53-year-old stage 72-year-old stage 73-year-old stage 30-year-old stage 24-year-old stage 26-year-old stage 39-year-old stage 69-year-old stage 43-year-old stage 29-year-old stage 38-year-old stage 41-year-old stage 55-year-old stage

Normal

Female Male

10x 5' v2

Cell

Mus musculus

Erythroid progenitor cell

Embryo

Theiler stage 23 Theiler stage 24 Theiler stage 21 Theiler stage 13 Theiler stage 25 Theiler stage 17 Theiler stage 16 Theiler stage 26 Theiler stage 12 Theiler stage 18 Theiler stage 20 Theiler stage 19 Theiler stage 27 Theiler stage 14 Theiler stage 15 Theiler stage 22

Normal

Female Male

Sci-rna-seq3

Nucleus

Homo sapiens

Granule cell Unipolar brush cell Astrocyte Oligodendrocyte precursor cell Oligodendrocyte Bergmann glial cell Interneuron Microglial cell Pericyte Endothelial cell Cerebellar golgi cell Molecular layer interneuron Purkinje cell

Normal Essential tremor

Parse evercode whole transcriptome v2

Homo sapiens

Taste receptor cell Ganglion interneuron Granule cell Unipolar brush cell Inhibitory interneuron Acinar cell Schwann cell Pancreatic ductal cell Epithelial cell of thymus Trophoblast giant cell Ciliated epithelial cell Glutamatergic neuron Stellate neuron Astrocyte Hepatoblast Innate lymphoid cell Corneal epithelial cell Cardiac muscle cell Endothelial cell of lymphatic vessel Glial cell Oligodendrocyte Epithelial cell of lower respiratory tract Gabaergic neuron Bipolar neuron Photoreceptor cell Mesothelial cell Endocardial cell Extravillous trophoblast Syncytiotrophoblast cell Chromaffin cell Stromal cell Ventricular cardiac muscle cell Endothelial cell of vascular tree Epicardial adipocyte Megakaryocyte Cell of skeletal muscle Endocrine cell Hematopoietic cell Tuft cell Microglial cell Regular atrial cardiac myocyte Blood vessel endothelial cell Neuron associated cell (sensu vertebrata) Hematopoietic stem cell Macroglial cell Skeletal muscle satellite cell Chorionic trophoblast cell Lens fiber cell Erythroblast Thymocyte Mueller cell Hepatic stellate cell Cortical cell of adrenal gland Squamous epithelial cell Mesangial cell Dermis microvascular lymphatic vessel endothelial cell Visceromotor neuron Amacrine cell Enteric neuron Neuroendocrine cell Intestinal epithelial cell Retinal pigment epithelial cell Sympathetic neuron Smooth muscle cell Retinal ganglion cell Neuron Purkinje cell Retina horizontal cell Professional antigen presenting cell Myeloid cell Goblet cell

Adrenal gland Thymus Liver Spleen Cerebellum Lung Telencephalon Kidney Pancreas Placenta Muscle organ Eye Intestine Stomach Heart

13th week post-fertilization stage 12th week post-fertilization stage 10th week post-fertilization stage 17th week post-fertilization stage 15th week post-fertilization stage 14th week post-fertilization stage 16th week post-fertilization stage 18th week post-fertilization stage

Normal Trisomy 18

Female Male

Sci-rna-seq3

Nucleus Cell

Homo sapiens

Gabaergic amacrine cell Retinal rod cell Flat midget bipolar cell Capillary endothelial cell Astrocyte Oligodendrocyte precursor cell Oligodendrocyte H2 horizontal cell Offx cell Retinal cone cell Diffuse bipolar 2 cell Macrophage Myelinating schwann cell Off parasol ganglion cell Diffuse bipolar 3a cell Mast cell Diffuse bipolar 3b cell Diffuse bipolar 4a cell Adipocyte On midget ganglion cell Invaginating midget bipolar cell Endothelial cell of venule Non-myelinating schwann cell Diffuse bipolar 5 cell H1 horizontal cell Giant bipolar cell Pigmented epithelial cell Microglial cell Vascular associated smooth muscle cell Fibroblast Diffuse bipolar 6 cell Blood vessel endothelial cell Pericyte Diffuse bipolar 4b cell B cell Diffuse bipolar 1 cell Mueller cell On-blue cone bipolar cell Dendritic cell On parasol ganglion cell T cell Amacrine cell Glycinergic amacrine cell Fenestrated endothelial cell Retinal pigment epithelial cell Retinal ganglion cell Retinal astrocyte Natural killer cell Melanocyte Off midget ganglion cell Rod bipolar cell S cone cell

Optic disc Cranial nerve ii

85-year-old stage 82-year-old stage 16-year-old stage 70-year-old stage 18-year-old stage 77-year-old stage 21-year-old stage 32-year-old stage 50-year-old stage 76-year-old stage 62-year-old stage 46-year-old stage 52-year-old stage 60-year-old stage 64-year-old stage 45-year-old stage 25-year-old stage 74-year-old stage 33-year-old stage 65-year-old stage 67-year-old stage 75-year-old stage 27-year-old stage 37-year-old stage 71-year-old stage 63-year-old stage 54-year-old stage 47-year-old stage 56-year-old stage 58-year-old stage 68-year-old stage 61-year-old stage 15-year-old stage 34-year-old stage 42-year-old stage 53-year-old stage 10-year-old stage 17-year-old stage 72-year-old stage 30-year-old stage 3-year-old stage Newborn stage (0-28 days) 69-year-old stage 43-year-old stage 90 year-old and over stage 81-year-old stage 11-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Capillary endothelial cell Cardiac muscle cell Endothelial cell of lymphatic vessel Lymphocyte Mesothelial cell Mast cell Adipocyte Vein endothelial cell Regular atrial cardiac myocyte Vascular associated smooth muscle cell Fibroblast Pericyte Endothelial cell Regular ventricular cardiac myocyte Smooth muscle cell Neuron Natural killer cell Endothelial cell of artery Myeloid cell

Interventricular septum Apex of heart Heart left ventricle Left cardiac atrium Right cardiac atrium Heart right ventricle

66-year-old stage 21-year-old stage 62-year-old stage 46-year-old stage 52-year-old stage 60-year-old stage 44-year-old stage 48-year-old stage 65-year-old stage Eighth decade stage 75-year-old stage 27-year-old stage 71-year-old stage 63-year-old stage 59-year-old stage 54-year-old stage Fifth decade stage 20-year-old stage 47-year-old stage 68-year-old stage 61-year-old stage 51-year-old stage 35-year-old stage 73-year-old stage Seventh decade stage 39-year-old stage 55-year-old stage Sixth decade stage

Normal

Female Male

10x 5' v1 10x 3' v3 10x 3' v2

Nucleus Cell

Homo sapiens

Mast cell Monocyte Fallopian tube secretory epithelial cell Fibroblast Endothelial cell B cell Dendritic cell Plasma cell T cell

Abdominal wall Liver Adnexa of uterus Right ovary Caecum Fallopian tube Transverse colon Urinary bladder Omentum Diaphragm Parietal peritoneum Peritoneum Paracolic gutter Ascitic fluid Abdomen Intestine Left ovary Large intestine Lymph node

66-year-old stage 70-year-old stage 77-year-old stage 50-year-old stage 57-year-old stage 76-year-old stage 46-year-old stage 60-year-old stage 80 year-old and over stage 64-year-old stage 45-year-old stage 75-year-old stage 71-year-old stage 78-year-old stage 63-year-old stage 59-year-old stage 47-year-old stage 56-year-old stage 58-year-old stage 68-year-old stage 61-year-old stage 69-year-old stage 41-year-old stage 55-year-old stage

Malignant ovarian serous tumor

Female

10x 3' v3

Cell

Mus musculus

Myofibroblast cell Colonocyte Endothelial cell of lymphatic vessel Colon epithelial cell Macrophage Cell Mast cell Colon glandular cell Monocyte Enteroendocrine cell of colon Granulocyte Fibroblast Malignant cell Blood vessel endothelial cell B cell Dendritic cell Regulatory t cell T cell Intestinal crypt stem cell of colon Natural killer cell

Normal Colorectal carcinoma

10x 3' v3 Spatial transcriptomics Slide-seqv2 10x 3' v2

Homo sapiens

Innate lymphoid cell Cell Erythroid lineage cell Megakaryocyte Cell of skeletal muscle Progenitor cell Granulocyte Fibroblast B cell T cell Smooth muscle cell Myeloid cell

Normal

10x 5' v2 10x 3' v2

Homo sapiens

Osteoblast Myofibroblast cell Pro-b cell Eurydendroid cell B-1 b cell Common myeloid progenitor Kupffer cell Pre-conventional dendritic cell Promonocyte Osteoclast Innate lymphoid cell Glial cell Double-positive, alpha-beta thymocyte Large pre-b-ii cell Macrophage Mature b cell Naive thymus-derived cd4-positive, alpha-beta t cell Mesothelial cell Granulocyte monocyte progenitor cell Late pro-b cell Stromal cell Interstitial cell of cajal Promyelocyte Mast cell Epithelial cell Small pre-b-ii cell Megakaryocyte-erythroid progenitor cell Fraction a pre-pro b cell Neutrophil Monocyte Megakaryocyte Cell of skeletal muscle Enteroendocrine cell Immature b cell Double negative thymocyte B-2 b cell Granulocyte Vascular associated smooth muscle cell Early lymphoid progenitor Fibroblast Naive thymus-derived cd8-positive, alpha-beta t cell Hepatocyte Group 3 innate lymphoid cell Hematopoietic stem cell Endothelial cell Skeletal muscle satellite cell Epithelial cell of nephron Cd8-alpha-alpha-positive, alpha-beta intraepithelial t cell Group 2 innate lymphoid cell Dendritic cell Plasma cell Erythrocyte Regulatory t cell T cell Plasmacytoid dendritic cell Common dendritic progenitor Myelocyte Smooth muscle cell Neuron Keratinocyte Natural killer cell Chondrocyte Hematopoietic multipotent progenitor cell Melanocyte Langerhans cell

Thymus Mesenteric lymph node Liver Spleen Kidney Bone marrow Gut wall Yolk sac Skin of body

9th week post-fertilization stage 13th week post-fertilization stage 12th week post-fertilization stage 10th week post-fertilization stage Carnegie stage 22 11th week post-fertilization stage 17th week post-fertilization stage 15th week post-fertilization stage Carnegie stage 19 Carnegie stage 13 14th week post-fertilization stage 16th week post-fertilization stage Carnegie stage 23 Carnegie stage 20

Normal

Female Male

10x 5' v1 10x 3' v2

Cell

Homo sapiens

Bronchus fibroblast of lung Cd1c-positive myeloid dendritic cell Pulmonary alveolar type 1 cell Capillary endothelial cell Classical monocyte Endothelial cell of lymphatic vessel Cd4-positive, alpha-beta t cell Pulmonary alveolar type 2 cell Club cell Non-classical monocyte Macrophage Mesothelial cell Alveolar macrophage Stromal cell Mast cell Epithelial cell of lung Neutrophil Pulmonary artery endothelial cell Vein endothelial cell Conventional dendritic cell Malignant cell Multiciliated epithelial cell Pericyte B cell Cd8-positive, alpha-beta t cell Dendritic cell Plasma cell Regulatory t cell Plasmacytoid dendritic cell Fibroblast of lung Smooth muscle cell Natural killer cell Myeloid cell

Adrenal tissue Liver Lung Brain Pleural effusion Lymph node

80-year-old stage 82-year-old stage 66-year-old stage 79-year-old stage 70-year-old stage 77-year-old stage 21-year-old stage 32-year-old stage 50-year-old stage 86-year-old stage 57-year-old stage 76-year-old stage 62-year-old stage 46-year-old stage 52-year-old stage 60-year-old stage 22-year-old stage 48-year-old stage 64-year-old stage 45-year-old stage 25-year-old stage 74-year-old stage 65-year-old stage 67-year-old stage 40-year-old stage 75-year-old stage 23-year-old stage 37-year-old stage 71-year-old stage 78-year-old stage 28-year-old stage 36-year-old stage 63-year-old stage 59-year-old stage 54-year-old stage 20-year-old stage 47-year-old stage 31-year-old stage 56-year-old stage 58-year-old stage 68-year-old stage 61-year-old stage 51-year-old stage 49-year-old stage 42-year-old stage 35-year-old stage 53-year-old stage 72-year-old stage 73-year-old stage 26-year-old stage 69-year-old stage 43-year-old stage 29-year-old stage 41-year-old stage 55-year-old stage 83-year-old stage

Normal Non-small cell lung carcinoma Lung adenocarcinoma Chronic obstructive pulmonary disease Squamous cell lung carcinoma

Female Male

Smart-seq2 10x 5' v1 10x 3' v3 Indrop 10x 3' v1 Gexscope technology Bd rhapsody whole transcriptome analysis Drop-seq 10x 3' v2

Cell

Homo sapiens

Astrocyte Oligodendrocyte precursor cell Oligodendrocyte Bergmann glial cell Vascular associated smooth muscle cell Fibroblast Ependymal cell Pericyte Endothelial cell Central nervous system macrophage Choroid plexus epithelial cell

Inferior frontal gyrus Middle temporal gyrus Putamen Brodmann (1909) area 24 Cerebellar vermis Posterior parahippocampal gyrus Anterior olfactory nucleus Brodmann (1909) area 38 Pretectal region Subicular complex Gray matter of midbrain Brodmann (1909) area 14 Brodmann (1909) area 19 Inferior temporal gyrus Hypothalamus Brodmann (1909) area 32 Cerebrocerebellum Dentate gyrus of hippocampal formation Lateral geniculate body Bed nucleus of stria terminalis Median tuberal portion Brodmann (1909) area 13 Primary somatosensory cortex Medial geniculate body Preoptic area Substantia innominata Perirhinal cortex Body of caudate nucleus Extrastriate cortex Lateral nuclear group of thalamus Dorsal tegmental nucleus Brodmann (1909) area 23 Centromedian nucleus of thalamus Brodmann (1909) area 35 Epithalamus Substantia nigra Central amygdaloid nucleus Rostral ca3 Granular insular cortex Agranular insular cortex Globus pallidus Basolateral amygdaloid nuclear complex Parabrachial nucleus Ventral anterior nucleus of thalamus Nucleus of dorsal thalamus Anterior cortical amygdaloid nucleus Anterior nuclear group Brodmann (1909) area 43 Primary auditory cortex Medial entorhinal cortex Red nucleus Corticomedial nuclear complex Lateral posterior nucleus of thalamus Brodmann (1909) area 46 Nucleus of medulla oblongata Supraoptic nucleus Uncal ca1 Cerebellar nuclear complex Temporal fusiform gyrus Lateral entorhinal cortex Brodmann (1909) area 25 Midbrain nucleus Primary motor cortex Pulvinar nucleus Pontine tegmentum Primary visual cortex Subthalamic nucleus Spinal cord Superior parietal cortex Hippocampal field Inferior olivary complex Piriform cortex Lateral amygdaloid nucleus Brodmann (1909) area 40 Claustrum of brain Midbrain tectum Mammillary body Pontine reticular formation Pontine nuclear group Medial dorsal nucleus of thalamus Retrosplenial region Nucleus accumbens Medial zone of hypothalamus Intralaminar nuclear group Accessory basal amygdaloid nucleus Superior temporal gyrus Septal nuclear complex Cuneus cortex

50-year-old stage 60-year-old stage 42-year-old stage 29-year-old stage

Normal

Female Male

10x 3' v3

Nucleus