Home
Data
Contribute
Stats
Resources
Metadata schema
Tools
Community
About
Contact us
Organism
0
Clear
Cell Type
0
Clear
Tissue
0
Clear
Developmental Stage
0
Clear
Disease
0
Clear
Sex
0
Clear
Technology
0
Clear
Suspension Type
0
Clear
Cell
890
Nucleus
655
Data Source
0
Clear
Asap
43
Bgee
40
Cellxgene
2,066
Single cell portal
179
Sort
Most cells
Fewest cells
2328
datasets
CELLxGENE
1,486,324 cells
•
Lee et al., 2024
Single-cell atlas of transcriptomic vulnerability across multiple neurodegenerative and neuropsychiatric diseases
Explore
h5ad
Homo sapiens
Homo sapiens
L2/3-6 intratelencephalic projecting glutamatergic neuron
+24
L2/3-6 intratelencephalic projecting glutamatergic neuron
Dorsolateral prefrontal cortex
Dorsolateral prefrontal cortex
85-year-old stage
+77
85-year-old stage
Atherosclerosis
+19
Atherosclerosis
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
L2/3-6 intratelencephalic projecting glutamatergic neuron
L2/3 intratelencephalic projecting glutamatergic neuron
L6 intratelencephalic projecting glutamatergic neuron
Vascular leptomeningeal cell
Astrocyte
Oligodendrocyte precursor cell
Oligodendrocyte
Gabaergic neuron
L6b glutamatergic neuron of the primary motor cortex
L6 corticothalamic-projecting glutamatergic cortical neuron
Sst gabaergic interneuron
L5/6 near-projecting glutamatergic neuron
Microglial cell
Lamp5 gabaergic interneuron
Pericyte
Endothelial cell
B cell
Plasma cell
T cell
Perivascular macrophage
Smooth muscle cell
L5 extratelencephalic projecting glutamatergic cortical neuron
Natural killer cell
Vip gabaergic interneuron
Pvalb gabaergic interneuron
Tissue
Dorsolateral prefrontal cortex
Developmental stage
85-year-old stage
66-year-old stage
19-year-old stage
16-year-old stage
79-year-old stage
6-month-old stage
3-month-old stage
18-year-old stage
21-year-old stage
32-year-old stage
50-year-old stage
57-year-old stage
76-year-old stage
62-year-old stage
46-year-old stage
52-year-old stage
60-year-old stage
22-year-old stage
4-month-old stage
44-year-old stage
48-year-old stage
45-year-old stage
25-year-old stage
74-year-old stage
33-year-old stage
65-year-old stage
67-year-old stage
2-year-old stage
40-year-old stage
1-month-old stage
75-year-old stage
27-year-old stage
23-year-old stage
37-year-old stage
71-year-old stage
14-year-old stage
78-year-old stage
6-year-old stage
28-year-old stage
36-year-old stage
63-year-old stage
59-year-old stage
54-year-old stage
20-year-old stage
47-year-old stage
31-year-old stage
2-month-old stage
56-year-old stage
58-year-old stage
68-year-old stage
61-year-old stage
15-year-old stage
34-year-old stage
8-year-old stage
51-year-old stage
49-year-old stage
42-year-old stage
35-year-old stage
53-year-old stage
10-year-old stage
17-year-old stage
73-year-old stage
30-year-old stage
24-year-old stage
13-year-old stage
3-year-old stage
26-year-old stage
84-year-old stage
12-year-old stage
39-year-old stage
4-year-old stage
43-year-old stage
5-year-old stage
29-year-old stage
38-year-old stage
41-year-old stage
55-year-old stage
83-year-old stage
Disease
Atherosclerosis
Epilepsy
Major depressive disorder
Normal
Tardive dyskinesia
Brain neoplasm
Type 1 diabetes mellitus
Obsessive-compulsive disorder
Bipolar disorder
Bulimia nervosa
Schizophrenia
Bipolar ii disorder
Bipolar i disorder
Anorexia nervosa
Type 2 diabetes mellitus
Diabetes mellitus
Schizoaffective depressive disorder
Post-traumatic stress disorder
Schizoaffective bipolar disorder
Attention deficit-hyperactivity disorder
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
Github:DiseaseNeuroGenomics/PsychADxD
adknowledgeportal.synapse.org
psych-ad.org
DOI:10.1101/2024.11.06.24316592
DOI:10.1101/2024.11.01.24316586
DOI:10.1101/2024.11.02.24316590
DOI:10.1101/2024.11.04.24316495
DOI:10.1101/2025.01.29.635498
DOI:10.1101/2023.05.19.541376
DOI:10.1038/s41597-025-04687-5
DOI:10.1101/2024.11.01.24316589
DOI:10.1101/2023.03.17.533005
CELLxGENE
1,462,702 cells
•
Ren et al., 2021
COVID-19 immune features revealed by a large-scale single-cell transcriptome atlas
Explore
h5ad
Homo sapiens
Homo sapiens
Mature gamma-delta t cell
+17
Mature gamma-delta t cell
Blood
+2
Blood
80-year-old stage
+63
80-year-old stage
Normal
+1
Normal
Female
+1
Female
10x 5' v2
+1
10x 5' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Mature gamma-delta t cell
Macrophage
Cd14-positive, cd16-positive monocyte
Mast cell
Epithelial cell
Neutrophil
Monocyte
Megakaryocyte
Cd14-positive, cd16-negative classical monocyte
Mature alpha-beta t cell
B cell
Cd8-positive, alpha-beta t cell
Squamous epithelial cell
Dendritic cell
Plasma cell
Secretory cell
Natural killer cell
Ciliated cell
Tissue
Blood
Lung
Saliva
Developmental stage
80-year-old stage
82-year-old stage
66-year-old stage
19-year-old stage
16-year-old stage
79-year-old stage
70-year-old stage
77-year-old stage
32-year-old stage
50-year-old stage
57-year-old stage
76-year-old stage
62-year-old stage
46-year-old stage
52-year-old stage
60-year-old stage
44-year-old stage
48-year-old stage
45-year-old stage
25-year-old stage
74-year-old stage
33-year-old stage
65-year-old stage
67-year-old stage
92-year-old stage
40-year-old stage
27-year-old stage
37-year-old stage
71-year-old stage
78-year-old stage
6-year-old stage
28-year-old stage
36-year-old stage
63-year-old stage
59-year-old stage
54-year-old stage
20-year-old stage
47-year-old stage
31-year-old stage
56-year-old stage
58-year-old stage
61-year-old stage
15-year-old stage
34-year-old stage
8-year-old stage
51-year-old stage
49-year-old stage
42-year-old stage
35-year-old stage
53-year-old stage
72-year-old stage
73-year-old stage
30-year-old stage
26-year-old stage
39-year-old stage
69-year-old stage
43-year-old stage
29-year-old stage
38-year-old stage
87-year-old stage
41-year-old stage
81-year-old stage
55-year-old stage
83-year-old stage
Disease
Normal
Covid-19
Sex
Female
Male
Technology
10x 5' v2
10x 3' v3
Suspension type
Cell
Related Links
covid19.cancer-pku.cn
GEO series:GSE158055
cancer-pku.cn
UCSC Cell Browser:covid19-critical-immuno
ngdc.cncb.ac.cn
Mendeley Data Dataset:dvp4y5ttd5
HumanCellAtlas:5f607e50-ba22-4598-b1e9-f3d9d7a35dcc
CELLxGENE
1,395,601 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
L2/3-6 intratelencephalic projecting glutamatergic neuron
+17
L2/3-6 intratelencephalic projecting glutamatergic neuron
Dorsolateral prefrontal cortex
Dorsolateral prefrontal cortex
80-year-old stage
+20
80-year-old stage
Normal
+1
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
L2/3-6 intratelencephalic projecting glutamatergic neuron
Caudal ganglionic eminence derived interneuron
Cerebral cortex endothelial cell
Vascular leptomeningeal cell
Oligodendrocyte precursor cell
Oligodendrocyte
Astrocyte of the cerebral cortex
Sncg gabaergic interneuron
Near-projecting glutamatergic cortical neuron
Sst gabaergic interneuron
Microglial cell
Lamp5 gabaergic interneuron
L6b glutamatergic cortical neuron
Corticothalamic-projecting glutamatergic cortical neuron
L5 extratelencephalic projecting glutamatergic cortical neuron
Vip gabaergic interneuron
Pvalb gabaergic interneuron
Pvalb chandelier gabaergic interneuron
Tissue
Dorsolateral prefrontal cortex
Developmental stage
80-year-old stage
85-year-old stage
82-year-old stage
70-year-old stage
77-year-old stage
50-year-old stage
86-year-old stage
80 year-old and over stage
89-year-old stage
75-year-old stage
78-year-old stage
68-year-old stage
42-year-old stage
72-year-old stage
88-year-old stage
84-year-old stage
69-year-old stage
29-year-old stage
87-year-old stage
81-year-old stage
83-year-old stage
Disease
Normal
Dementia
Sex
Female
Male
Technology
10x 3' v3
10x multiome
Suspension type
Nucleus
Related Links
Alzheimer's Disease Research Center
Adult Changes in Thought Study
Allen Brain Map:seattle-alzheimers-disease
AD knowledge portal:syn26223298
AWS Open Data:allen-sea-ad-atlas
BRaIN-lab
CELLxGENE
1,388,643 cells
•
Lake et al., 2025
Cellular and Spatial Drivers of Unresolved Injury and Functional Decline in the Human Kidney
Explore
h5ad
Homo sapiens
Homo sapiens
Kidney loop of henle thick ascending limb epithelial cell
+62
Kidney loop of henle thick ascending limb epithelial cell
Renal medulla
+3
Renal medulla
66-year-old stage
+23
66-year-old stage
Normal
+2
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Kidney loop of henle thick ascending limb epithelial cell
Kidney cortex collecting duct principal cell
Juxtaglomerular complex cell
Cd8-alpha-negative thymic conventional dendritic cell
Classical monocyte
Kidney outer medulla peritubular capillary cell
Kidney connecting tubule epithelial cell
Parietal epithelial cell
Kidney connecting tubule principal cell
Papillary tips cell
Non-classical monocyte
Naive regulatory t cell
Macrophage
Naive thymus-derived cd4-positive, alpha-beta t cell
Kidney distal convoluted tubule epithelial cell
Kidney collecting duct alpha-intercalated cell
Mucosal invariant t cell
Kidney interstitial myofibroblast
Kidney interstitial fibroblast
Kidney collecting duct principal cell
Mast cell
Kidney loop of henle thin descending limb epithelial cell
Adventitial fibroblast
Renal interstitial pericyte
Kidney efferent arteriole endothelial cell
Adipocyte
Endothelial cell of venule
Migratory dendritic cell
Neutrophil
Macula densa epithelial cell
Kidney loop of henle cortical thick ascending limb epithelial cell
Cycling macrophage
Vasa recta ascending limb cell
Kidney resident macrophage
Epithelial cell of proximal tubule
Kidney collecting duct beta-intercalated cell
Vein endothelial cell
Kidney collecting duct intercalated cell
Vascular associated smooth muscle cell
Epithelial cell of proximal tubule segment 2
Group 3 innate lymphoid cell
Podocyte
Effector memory cd8-positive, alpha-beta t cell
Epithelial cell of proximal tubule segment 1
Endothelial cell
Glomerular capillary endothelial cell
B cell
Cycling t cell
Plasmacytoid dendritic cell, human
Plasma cell
Peritubular capillary endothelial cell
Mesangial cell
Kidney cortex peritubular capillary cell
Erythrocyte
Vasa recta descending limb cell
Effector memory cd8-positive, alpha-beta t cell, terminally differentiated
Renal medullary fibroblast
Vasa recta cell
Natural killer cell
Epithelial cell of proximal tubule segment 3
Cd8-alpha-positive thymic conventional dendritic cell
Neural cell
Kidney loop of henle thin ascending limb epithelial cell
Tissue
Renal medulla
Cortex of kidney
Kidney
Renal papilla
Developmental stage
66-year-old stage
70-year-old stage
Fourth decade stage
57-year-old stage
76-year-old stage
64-year-old stage
45-year-old stage
Eighth decade stage
14-year-old stage
Ninth decade stage
36-year-old stage
63-year-old stage
59-year-old stage
54-year-old stage
Fifth decade stage
56-year-old stage
49-year-old stage
Seventh decade stage
69-year-old stage
Third decade stage
43-year-old stage
Tenth decade stage
29-year-old stage
Sixth decade stage
Disease
Normal
Chronic kidney disease
Acute kidney failure
Sex
Female
Male
Technology
10x 3' v3
10x multiome
Suspension type
Nucleus
Related Links
protocols.io:isolation-of-single-nuclei-from-solid-tissues-5qpvonb6bl4o/v1
protocols.io:single-cell-rna-sequencing-scrna-seq-eq2ly3zjpgx9/v1
kpmp.org
Github:KPMP-Scientific/KPMP-Atlas-v2
protocols.io:10x-genomics-single-nucleus-rna-sequencing-for-tra-e6nvw99wzgmk/v3
protocols.io:10x-genomics-single-nucleus-multiome-rna-atac-assa-5qpvoby69l4o/v2
CELLxGENE
1,378,211 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
L2/3-6 intratelencephalic projecting glutamatergic neuron
+17
L2/3-6 intratelencephalic projecting glutamatergic neuron
Middle temporal gyrus
Middle temporal gyrus
80-year-old stage
+23
80-year-old stage
Normal
+1
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
L2/3-6 intratelencephalic projecting glutamatergic neuron
Caudal ganglionic eminence derived interneuron
Cerebral cortex endothelial cell
Vascular leptomeningeal cell
Oligodendrocyte precursor cell
Oligodendrocyte
Astrocyte of the cerebral cortex
Sncg gabaergic interneuron
Near-projecting glutamatergic cortical neuron
Sst gabaergic interneuron
Microglial cell
Lamp5 gabaergic interneuron
L6b glutamatergic cortical neuron
Corticothalamic-projecting glutamatergic cortical neuron
L5 extratelencephalic projecting glutamatergic cortical neuron
Vip gabaergic interneuron
Pvalb gabaergic interneuron
Pvalb chandelier gabaergic interneuron
Tissue
Middle temporal gyrus
Developmental stage
80-year-old stage
85-year-old stage
82-year-old stage
70-year-old stage
77-year-old stage
50-year-old stage
86-year-old stage
60-year-old stage
80 year-old and over stage
89-year-old stage
65-year-old stage
75-year-old stage
78-year-old stage
68-year-old stage
42-year-old stage
72-year-old stage
88-year-old stage
84-year-old stage
69-year-old stage
43-year-old stage
29-year-old stage
87-year-old stage
81-year-old stage
83-year-old stage
Disease
Normal
Dementia
Sex
Female
Male
Technology
10x 3' v3
10x multiome
Suspension type
Nucleus
Related Links
Alzheimer's Disease Research Center
Adult Changes in Thought Study
BRaIN-lab
AD knowledge portal:syn26223298
AWS Open Data:allen-sea-ad-atlas
Allen Brain Map:seattle-alzheimers-disease
CELLxGENE
1,358,573 cells
•
Oliver et al., 2024
Single-cell integration reveals metaplasia in inflammatory gut diseases
Explore
h5ad
Homo sapiens
Homo sapiens
Myofibroblast cell
+90
Myofibroblast cell
Epithelium of esophagus
+35
Epithelium of esophagus
80-year-old stage
+90
80-year-old stage
Ulcerative colitis
+5
Ulcerative colitis
Female
+1
Female
10x 5' v2
+5
10x 5' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Myofibroblast cell
Pro-b cell
Myoepithelial cell
Best4+ enterocyte
Transit amplifying cell
Capillary endothelial cell
Peptic cell
Colonocyte
Naive b cell
Igg plasma cell
Type x enteroendocrine cell
Afferent neuron
Type ec enteroendocrine cell
Cd4-positive, alpha-beta memory t cell
Endothelial cell of lymphatic vessel
Muscle cell
Intestinal crypt stem cell
Ionocyte
Iga plasma cell
Fibroblastic reticular cell
Macrophage
Naive thymus-derived cd4-positive, alpha-beta t cell
Mesothelial cell
Neuroblast (sensu vertebrata)
Mucosal invariant t cell
Interstitial cell of cajal
Mast cell
Basal cell
Type g enteroendocrine cell
Mesodermal cell
Epithelial cell
Cd16-negative, cd56-bright natural killer cell, human
Paneth cell
Glandular cell of esophagus
Monocyte
Interneuron
Megakaryocyte
Immature pericyte
Acinar cell of salivary gland
Enteroendocrine cell
Progenitor cell
Plasmablast
Vein endothelial cell
Dendritic cell, human
Motor neuron
Cd8-positive, alpha-beta memory t cell
Vascular associated smooth muscle cell
Conventional dendritic cell
Fibroblast
Naive thymus-derived cd8-positive, alpha-beta t cell
Group 3 innate lymphoid cell
Angiogenic pericyte
Effector memory cd8-positive, alpha-beta t cell
Parietal cell
T-helper 17 cell
Salivary gland glandular cell
Pericyte
Endothelial cell
Cycling basal cell
Follicular dendritic cell
Tuft cell of small intestine
Mesenchymal cell
Mucous neck cell of gastric gland
Trem2-positive macrophage
Cycling t cell
Plasmacytoid dendritic cell, human
Enteroglial cell
Erythrocyte
Regulatory t cell
Memory b cell
Enteric neuron
Precursor b cell
Enterocyte
Igm plasma cell
Inhibitory motor neuron
Foveolar cell of stomach
T follicular helper cell
Fibroblast of gingiva
Smooth muscle cell
Gastrointestinal tract (lamina propria) macrophage
Eosinophil
Keratinocyte
Neutrophil progenitor cell
Endothelial cell of artery
Gamma-delta t cell
Melanocyte
Cd16-positive, cd56-dim natural killer cell, human
Langerhans cell
M cell of gut
Germinal center b cell
Intestine goblet cell
Tissue
Epithelium of esophagus
Gingiva
Lamina propria of mucosa of colon
Body of stomach
Duodenal epithelium
Ileum
Rectum
Ileum lamina propria
Mesenteric lymph node
Parotid gland
Epithelium of rectum
Caecum
Small intestine
Esophagus
Colonic epithelium
Epithelium of stomach
Jejunum
Transverse colon
Labial gland
Epithelium of small intestine
Pyloric antrum
Lamina propria of small intestine
Sigmoid colon
Periodontium
Duodenum
Ileal epithelium
Pylorus
Colon
Intestine
Descending colon
Ascending colon
Stomach
Rectosigmoid junction
Buccal mucosa
Vermiform appendix
Colonic mucosa
Developmental stage
80-year-old stage
9th week post-fertilization stage
85-year-old stage
66-year-old stage
70-year-old stage
Young adult stage
Fourth decade stage
77-year-old stage
13th week post-fertilization stage
12th week post-fertilization stage
21-year-old stage
32-year-old stage
50-year-old stage
86-year-old stage
57-year-old stage
76-year-old stage
10th week post-fertilization stage
62-year-old stage
Prime adult stage
46-year-old stage
52-year-old stage
60-year-old stage
22-year-old stage
Carnegie stage 22
Juvenile stage (5-14 yo)
44-year-old stage
48-year-old stage
45-year-old stage
74-year-old stage
33-year-old stage
65-year-old stage
67-year-old stage
Embryonic stage
2-year-old stage
Eighth decade stage
75-year-old stage
23-year-old stage
37-year-old stage
Adult stage
11th week post-fertilization stage
14-year-old stage
21st week post-fertilization stage
6-year-old stage
28-year-old stage
19th week post-fertilization stage
63-year-old stage
17th week post-fertilization stage
59-year-old stage
54-year-old stage
Fifth decade stage
31-year-old stage
2-month-old stage
15th week post-fertilization stage
56-year-old stage
58-year-old stage
Pediatric stage
68-year-old stage
61-year-old stage
34-year-old stage
Carnegie stage 19
51-year-old stage
35-year-old stage
16th week post-fertilization stage
10-year-old stage
72-year-old stage
30-year-old stage
24-year-old stage
13-year-old stage
18th week post-fertilization stage
Seventh decade stage
26-year-old stage
84-year-old stage
12-year-old stage
39-year-old stage
Newborn stage (0-28 days)
4-year-old stage
Carnegie stage 17
9-year-old stage
69-year-old stage
Third decade stage
43-year-old stage
5-year-old stage
29-year-old stage
87-year-old stage
41-year-old stage
Carnegie stage 18
81-year-old stage
55-year-old stage
Carnegie stage 16
Sixth decade stage
11-year-old stage
Disease
Ulcerative colitis
Inflammatory bowel disease
Normal
Crohn disease
Colorectal cancer
Gastric cancer
Sex
Female
Male
Technology
10x 5' v2
10x 5' v1
10x 3' v3
10x 5' transcription profiling
10x 3' v1
10x 3' v2
Suspension type
Cell
Related Links
teichlab.org
ArrayExpress BioStudies:E-MTAB-14050
CELLxGENE
1,350,748 cells
•
Gong et al., 2025
Multi-omic profiling reveals age-related immune dynamics in healthy adults
Explore
h5ad
Homo sapiens
Homo sapiens
Common myeloid progenitor
+37
Common myeloid progenitor
Blood
Blood
57-year-old stage
+10
57-year-old stage
Normal
Normal
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Common myeloid progenitor
Be cell
Cd1c-positive myeloid dendritic cell
Mature gamma-delta t cell
Naive b cell
Innate lymphoid cell
Cd4-positive, alpha-beta memory t cell
Platelet
Cd8-positive, alpha-beta regulatory t cell
Naive regulatory t cell
Naive thymus-derived cd4-positive, alpha-beta t cell
Mucosal invariant t cell
Effector memory cd4-positive, alpha-beta t cell
Cd141-positive myeloid dendritic cell
Transitional stage b cell
Axl+ dendritic cell, human
Cd16-negative, cd56-bright natural killer cell, human
Common lymphoid progenitor
Double negative thymocyte
Cd14-positive, cd16-negative classical monocyte
Cd8-positive, alpha-beta memory t cell
Naive thymus-derived cd8-positive, alpha-beta t cell
Central memory cd4-positive, alpha-beta t cell
Effector memory cd8-positive, alpha-beta t cell
Central memory cd8-positive, alpha-beta t cell
Intermediate monocyte
Plasma cell
Erythrocyte
T cell
Memory b cell
Plasmacytoid dendritic cell
Cd14-low, cd16-positive monocyte
Memory regulatory t cell
Memory ccr4-positive regulatory t cell
Natural killer cell
Basophil mast progenitor cell
Cd8aa(i) thymocyte
Cd16-positive, cd56-dim natural killer cell, human
Tissue
Blood
Developmental stage
57-year-old stage
62-year-old stage
60-year-old stage
64-year-old stage
65-year-old stage
63-year-old stage
59-year-old stage
56-year-old stage
58-year-old stage
61-year-old stage
55-year-old stage
Disease
Normal
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
Github:aifimmunology/IHA-Figure
apps.allenimmunology.org
GEO series:GSE271896
dbGaP Study:phs003841
Github:aifimmunology/sound-life-scrna-analysis
CELLxGENE collection:77f9d7e9-5675-49c3-abed-ce02f39eef1b
CELLxGENE
1,332,155 cells
•
Lee et al., 2024
Single-cell atlas of transcriptomic vulnerability across multiple neurodegenerative and neuropsychiatric diseases
Explore
h5ad
Homo sapiens
Homo sapiens
L2/3-6 intratelencephalic projecting glutamatergic neuron
+24
L2/3-6 intratelencephalic projecting glutamatergic neuron
Dorsolateral prefrontal cortex
Dorsolateral prefrontal cortex
85-year-old stage
+83
85-year-old stage
Atherosclerosis
+3
Atherosclerosis
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
L2/3-6 intratelencephalic projecting glutamatergic neuron
L2/3 intratelencephalic projecting glutamatergic neuron
L6 intratelencephalic projecting glutamatergic neuron
Vascular leptomeningeal cell
Astrocyte
Oligodendrocyte precursor cell
Oligodendrocyte
Gabaergic neuron
L6b glutamatergic neuron of the primary motor cortex
L6 corticothalamic-projecting glutamatergic cortical neuron
Sst gabaergic interneuron
L5/6 near-projecting glutamatergic neuron
Microglial cell
Lamp5 gabaergic interneuron
Pericyte
Endothelial cell
B cell
Plasma cell
T cell
Perivascular macrophage
Smooth muscle cell
L5 extratelencephalic projecting glutamatergic cortical neuron
Natural killer cell
Vip gabaergic interneuron
Pvalb gabaergic interneuron
Tissue
Dorsolateral prefrontal cortex
Developmental stage
85-year-old stage
66-year-old stage
19-year-old stage
16-year-old stage
79-year-old stage
6-month-old stage
70-year-old stage
3-month-old stage
18-year-old stage
21-year-old stage
32-year-old stage
50-year-old stage
86-year-old stage
57-year-old stage
76-year-old stage
62-year-old stage
46-year-old stage
52-year-old stage
60-year-old stage
22-year-old stage
4-month-old stage
80 year-old and over stage
44-year-old stage
48-year-old stage
64-year-old stage
89-year-old stage
45-year-old stage
25-year-old stage
74-year-old stage
65-year-old stage
67-year-old stage
2-year-old stage
40-year-old stage
1-month-old stage
75-year-old stage
27-year-old stage
23-year-old stage
37-year-old stage
71-year-old stage
14-year-old stage
78-year-old stage
6-year-old stage
28-year-old stage
36-year-old stage
63-year-old stage
59-year-old stage
54-year-old stage
20-year-old stage
47-year-old stage
31-year-old stage
2-month-old stage
56-year-old stage
58-year-old stage
61-year-old stage
15-year-old stage
34-year-old stage
8-year-old stage
51-year-old stage
49-year-old stage
42-year-old stage
35-year-old stage
53-year-old stage
10-year-old stage
17-year-old stage
72-year-old stage
73-year-old stage
30-year-old stage
24-year-old stage
13-year-old stage
3-year-old stage
26-year-old stage
88-year-old stage
84-year-old stage
12-year-old stage
4-year-old stage
69-year-old stage
43-year-old stage
5-year-old stage
29-year-old stage
38-year-old stage
41-year-old stage
81-year-old stage
55-year-old stage
83-year-old stage
Disease
Atherosclerosis
Normal
Type 1 diabetes mellitus
Type 2 diabetes mellitus
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
DOI:10.1038/s41597-025-04687-5
adknowledgeportal.synapse.org
psych-ad.org
DOI:10.1101/2024.11.06.24316592
DOI:10.1101/2024.11.01.24316586
DOI:10.1101/2024.11.01.24316589
DOI:10.1101/2024.11.04.24316495
DOI:10.1101/2025.01.29.635498
DOI:10.1101/2023.05.19.541376
DOI:10.1101/2023.03.17.533005
Github:DiseaseNeuroGenomics/PsychADxD
DOI:10.1101/2024.11.02.24316590
CELLxGENE
1,322,061 cells
•
Gong et al., 2025
Multi-omic profiling reveals age-related immune dynamics in healthy adults
Explore
h5ad
Homo sapiens
Homo sapiens
Common myeloid progenitor
+37
Common myeloid progenitor
Blood
Blood
66-year-old stage
+8
66-year-old stage
Cytomegalovirus infection
Cytomegalovirus infection
Male
Male
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Common myeloid progenitor
Be cell
Cd1c-positive myeloid dendritic cell
Mature gamma-delta t cell
Naive b cell
Innate lymphoid cell
Cd4-positive, alpha-beta memory t cell
Platelet
Cd8-positive, alpha-beta regulatory t cell
Naive regulatory t cell
Naive thymus-derived cd4-positive, alpha-beta t cell
Mucosal invariant t cell
Effector memory cd4-positive, alpha-beta t cell
Cd141-positive myeloid dendritic cell
Transitional stage b cell
Axl+ dendritic cell, human
Cd16-negative, cd56-bright natural killer cell, human
Common lymphoid progenitor
Double negative thymocyte
Cd14-positive, cd16-negative classical monocyte
Cd8-positive, alpha-beta memory t cell
Naive thymus-derived cd8-positive, alpha-beta t cell
Central memory cd4-positive, alpha-beta t cell
Effector memory cd8-positive, alpha-beta t cell
Central memory cd8-positive, alpha-beta t cell
Intermediate monocyte
Plasma cell
Erythrocyte
T cell
Memory b cell
Plasmacytoid dendritic cell
Cd14-low, cd16-positive monocyte
Memory regulatory t cell
Memory ccr4-positive regulatory t cell
Natural killer cell
Basophil mast progenitor cell
Cd8aa(i) thymocyte
Cd16-positive, cd56-dim natural killer cell, human
Tissue
Blood
Developmental stage
66-year-old stage
57-year-old stage
60-year-old stage
64-year-old stage
65-year-old stage
59-year-old stage
56-year-old stage
58-year-old stage
55-year-old stage
Disease
Cytomegalovirus infection
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
Github:aifimmunology/sound-life-scrna-analysis
Github:aifimmunology/IHA-Figure
apps.allenimmunology.org
CELLxGENE collection:77f9d7e9-5675-49c3-abed-ce02f39eef1b
GEO series:GSE271896
dbGaP Study:phs003841
CELLxGENE
1,283,972 cells
•
Salcher et al., 2022
High-resolution single-cell atlas reveals diversity and plasticity of tissue-resident neutrophils in non-small cell lung cancer
Explore
h5ad
Homo sapiens
Homo sapiens
Bronchus fibroblast of lung
+32
Bronchus fibroblast of lung
Adrenal tissue
+5
Adrenal tissue
80-year-old stage
+56
80-year-old stage
Normal
+4
Normal
Female
+1
Female
Smart-seq2
+8
Smart-seq2
Cell
Cell
Organism
Homo sapiens
Cell type
Bronchus fibroblast of lung
Cd1c-positive myeloid dendritic cell
Pulmonary alveolar type 1 cell
Capillary endothelial cell
Classical monocyte
Endothelial cell of lymphatic vessel
Cd4-positive, alpha-beta t cell
Pulmonary alveolar type 2 cell
Club cell
Non-classical monocyte
Macrophage
Mesothelial cell
Alveolar macrophage
Stromal cell
Mast cell
Epithelial cell of lung
Neutrophil
Pulmonary artery endothelial cell
Vein endothelial cell
Conventional dendritic cell
Malignant cell
Multiciliated epithelial cell
Pericyte
B cell
Cd8-positive, alpha-beta t cell
Dendritic cell
Plasma cell
Regulatory t cell
Plasmacytoid dendritic cell
Fibroblast of lung
Smooth muscle cell
Natural killer cell
Myeloid cell
Tissue
Adrenal tissue
Liver
Lung
Brain
Pleural effusion
Lymph node
Developmental stage
80-year-old stage
82-year-old stage
66-year-old stage
79-year-old stage
70-year-old stage
77-year-old stage
21-year-old stage
32-year-old stage
50-year-old stage
86-year-old stage
57-year-old stage
76-year-old stage
62-year-old stage
46-year-old stage
52-year-old stage
60-year-old stage
22-year-old stage
48-year-old stage
64-year-old stage
45-year-old stage
25-year-old stage
74-year-old stage
65-year-old stage
67-year-old stage
40-year-old stage
75-year-old stage
23-year-old stage
37-year-old stage
71-year-old stage
78-year-old stage
28-year-old stage
36-year-old stage
63-year-old stage
59-year-old stage
54-year-old stage
20-year-old stage
47-year-old stage
31-year-old stage
56-year-old stage
58-year-old stage
68-year-old stage
61-year-old stage
51-year-old stage
49-year-old stage
42-year-old stage
35-year-old stage
53-year-old stage
72-year-old stage
73-year-old stage
26-year-old stage
90-year-old stage
69-year-old stage
43-year-old stage
29-year-old stage
41-year-old stage
55-year-old stage
83-year-old stage
Disease
Normal
Non-small cell lung carcinoma
Lung adenocarcinoma
Chronic obstructive pulmonary disease
Squamous cell lung carcinoma
Sex
Female
Male
Technology
Smart-seq2
10x 5' v1
10x 3' v3
Indrop
10x 3' v1
Gexscope technology
Bd rhapsody whole transcriptome analysis
Drop-seq
10x 3' v2
Suspension type
Cell
Related Links
Zenodo record:7227571
CELLxGENE
1,281,499 cells
•
Wells et al., 2025
Multimodal profiling reveals tissue-directed signatures of human immune cells altered with age
Explore
h5ad
Homo sapiens
Homo sapiens
Naive b cell
+30
Naive b cell
Lamina propria of mucosa of colon
+13
Lamina propria of mucosa of colon
Fourth decade stage
+16
Fourth decade stage
Normal
Normal
Female
+1
Female
10x 5' v2
+1
10x 5' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Naive b cell
Classical monocyte
Group 1 innate lymphoid cell
Cd4-positive, alpha-beta memory t cell
Non-classical monocyte
Macrophage
Naive thymus-derived cd4-positive, alpha-beta t cell
Mucosal invariant t cell
Effector memory cd4-positive, alpha-beta t cell
Mast cell
Effector memory cd4-positive, alpha-beta t cell, terminally differentiated
Cd16-negative, cd56-bright natural killer cell, human
Progenitor cell
Plasmablast
Cd8-positive, alpha-beta memory t cell
Immature innate lymphoid cell
Conventional dendritic cell
Naive thymus-derived cd8-positive, alpha-beta t cell
Central memory cd4-positive, alpha-beta t cell
Group 3 innate lymphoid cell
Effector memory cd8-positive, alpha-beta t cell
Central memory cd8-positive, alpha-beta t cell
B cell
Cd4-positive, cd25-positive, alpha-beta regulatory t cell
Plasma cell
Memory b cell
Plasmacytoid dendritic cell
Effector memory cd8-positive, alpha-beta t cell, terminally differentiated
Gamma-delta t cell
Cd16-positive, cd56-dim natural killer cell, human
Germinal center b cell
Tissue
Lamina propria of mucosa of colon
Blood
Mesenteric lymph node
Liver
Spleen
Epithelial lining fluid
Lung
Jejunum lamina propria
Colonic epithelium
Inguinal lymph node
Bone marrow
Skin of body
Jejunal epithelium
Thoracic lymph node
Developmental stage
Fourth decade stage
48-year-old stage
64-year-old stage
25-year-old stage
33-year-old stage
67-year-old stage
Eighth decade stage
75-year-old stage
27-year-old stage
23-year-old stage
Fifth decade stage
20-year-old stage
56-year-old stage
68-year-old stage
73-year-old stage
Third decade stage
Sixth decade stage
Disease
Normal
Sex
Female
Male
Technology
10x 5' v2
10x 3' v3
Suspension type
Cell
Related Links
Github:YosefLab/CZI-Immuneaging
GEO series:GSE299043
CELLxGENE
1,265,624 cells
•
Kock et al., 2025
Asian diversity in human immune cells
Explore
h5ad
Homo sapiens
Homo sapiens
Pre-conventional dendritic cell
+31
Pre-conventional dendritic cell
Blood
Blood
66-year-old stage
+54
66-year-old stage
Normal
Normal
Female
+1
Female
10x 5' v2
10x 5' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Pre-conventional dendritic cell
Cd1c-positive myeloid dendritic cell
Naive b cell
Innate lymphoid cell
Cd4-positive, alpha-beta t cell
Platelet
Double negative t regulatory cell
Mature b cell
Naive thymus-derived cd4-positive, alpha-beta t cell
Mucosal invariant t cell
Effector memory cd4-positive, alpha-beta t cell
Cd141-positive myeloid dendritic cell
Cd16-negative, cd56-bright natural killer cell, human
Cd14-positive monocyte
Cd8-positive, alpha-beta cytotoxic t cell
Cd8-positive, alpha-beta memory t cell
Naive thymus-derived cd8-positive, alpha-beta t cell
Central memory cd4-positive, alpha-beta t cell
Hematopoietic stem cell
B cell
Cd8-positive, alpha-beta t cell
Cd4-positive, alpha-beta cytotoxic t cell
Plasma cell
Regulatory t cell
T cell
Memory b cell
Plasmacytoid dendritic cell
Cd14-low, cd16-positive monocyte
Natural killer cell
Gamma-delta t cell
Cd16-positive, cd56-dim natural killer cell, human
Myeloid cell
Tissue
Blood
Developmental stage
66-year-old stage
19-year-old stage
77-year-old stage
21-year-old stage
32-year-old stage
50-year-old stage
57-year-old stage
62-year-old stage
46-year-old stage
52-year-old stage
60-year-old stage
22-year-old stage
44-year-old stage
48-year-old stage
64-year-old stage
45-year-old stage
25-year-old stage
33-year-old stage
65-year-old stage
67-year-old stage
40-year-old stage
75-year-old stage
27-year-old stage
23-year-old stage
37-year-old stage
71-year-old stage
28-year-old stage
36-year-old stage
63-year-old stage
59-year-old stage
54-year-old stage
47-year-old stage
31-year-old stage
56-year-old stage
58-year-old stage
68-year-old stage
61-year-old stage
34-year-old stage
51-year-old stage
49-year-old stage
42-year-old stage
35-year-old stage
53-year-old stage
72-year-old stage
73-year-old stage
30-year-old stage
24-year-old stage
26-year-old stage
39-year-old stage
69-year-old stage
43-year-old stage
29-year-old stage
38-year-old stage
41-year-old stage
55-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 5' v2
Suspension type
Cell
Related Links
Github:prabhakarlab/AIDA_Phase1
Zenodo record:14722572
HumanCellAtlas:35d5b057-3daf-4ccd-8112-196194598893
celltype.info
HumanCellAtlas:f0f89c14-7460-4bab-9d42-22228a91f185
1
2
3
4
5
6
…
387
388
Close