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43
Bgee
40
Cellxgene
2,080
Single cell portal
183
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2346
datasets
CELLxGENE
1,486,324 cells
•
Lee et al., 2024
Single-cell atlas of transcriptomic vulnerability across multiple neurodegenerative and neuropsychiatric diseases
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+24
T cell
Dorsolateral prefrontal cortex
Dorsolateral prefrontal cortex
66-year-old stage
+77
66-year-old stage
Tardive dyskinesia
+19
Tardive dyskinesia
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
T cell
L2/3 intratelencephalic projecting glutamatergic neuron
L5/6 near-projecting glutamatergic neuron
Natural killer cell
Oligodendrocyte precursor cell
Endothelial cell
Oligodendrocyte
L6b glutamatergic neuron of the primary motor cortex
Vascular leptomeningeal cell
Smooth muscle cell
Lamp5 gabaergic interneuron
Microglial cell
Vip gabaergic interneuron
L2/3-6 intratelencephalic projecting glutamatergic neuron
Plasma cell
L5 extratelencephalic projecting glutamatergic cortical neuron
L6 corticothalamic-projecting glutamatergic cortical neuron
Pvalb gabaergic interneuron
B cell
Pericyte
Perivascular macrophage
L6 intratelencephalic projecting glutamatergic neuron
Astrocyte
Sst gabaergic interneuron
Gabaergic neuron
Tissue
Dorsolateral prefrontal cortex
Developmental stage
66-year-old stage
37-year-old stage
75-year-old stage
21-year-old stage
13-year-old stage
34-year-old stage
65-year-old stage
42-year-old stage
26-year-old stage
43-year-old stage
71-year-old stage
85-year-old stage
53-year-old stage
61-year-old stage
2-year-old stage
52-year-old stage
54-year-old stage
68-year-old stage
3-month-old stage
48-year-old stage
30-year-old stage
39-year-old stage
44-year-old stage
17-year-old stage
29-year-old stage
38-year-old stage
56-year-old stage
8-year-old stage
55-year-old stage
84-year-old stage
15-year-old stage
50-year-old stage
28-year-old stage
51-year-old stage
57-year-old stage
12-year-old stage
74-year-old stage
6-month-old stage
49-year-old stage
14-year-old stage
24-year-old stage
16-year-old stage
23-year-old stage
35-year-old stage
58-year-old stage
59-year-old stage
25-year-old stage
67-year-old stage
2-month-old stage
3-year-old stage
32-year-old stage
33-year-old stage
45-year-old stage
62-year-old stage
41-year-old stage
46-year-old stage
60-year-old stage
78-year-old stage
18-year-old stage
31-year-old stage
36-year-old stage
1-month-old stage
22-year-old stage
19-year-old stage
63-year-old stage
20-year-old stage
47-year-old stage
4-month-old stage
76-year-old stage
79-year-old stage
73-year-old stage
83-year-old stage
5-year-old stage
27-year-old stage
6-year-old stage
40-year-old stage
10-year-old stage
4-year-old stage
Disease
Tardive dyskinesia
Post-traumatic stress disorder
Major depressive disorder
Epilepsy
Diabetes mellitus
Schizoaffective depressive disorder
Attention deficit-hyperactivity disorder
Type 1 diabetes mellitus
Bipolar ii disorder
Atherosclerosis
Bipolar i disorder
Bipolar disorder
Anorexia nervosa
Normal
Type 2 diabetes mellitus
Bulimia nervosa
Schizophrenia
Schizoaffective bipolar disorder
Obsessive-compulsive disorder
Brain neoplasm
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
Github:DiseaseNeuroGenomics/PsychADxD
adknowledgeportal.synapse.org
psych-ad.org
DOI:10.1101/2024.11.06.24316592
DOI:10.1101/2024.11.01.24316589
DOI:10.1101/2024.11.02.24316590
DOI:10.1101/2024.11.04.24316495
DOI:10.1101/2025.01.29.635498
DOI:10.1101/2023.03.17.533005
DOI:10.1038/s41597-025-04687-5
DOI:10.1101/2024.11.01.24316586
DOI:10.1101/2023.05.19.541376
CELLxGENE
1,462,702 cells
•
Ren et al., 2021
COVID-19 immune features revealed by a large-scale single-cell transcriptome atlas
Explore
h5ad
Homo sapiens
Homo sapiens
Neutrophil
+17
Neutrophil
Lung
+2
Lung
66-year-old stage
+63
66-year-old stage
Covid-19
+1
Covid-19
Female
+1
Female
10x 5' v2
+1
10x 5' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Neutrophil
Mature gamma-delta t cell
Cd14-positive, cd16-positive monocyte
Ciliated cell
Natural killer cell
Mature alpha-beta t cell
Secretory cell
Mast cell
Cd8-positive, alpha-beta t cell
Epithelial cell
Macrophage
Plasma cell
Megakaryocyte
Squamous epithelial cell
B cell
Monocyte
Cd14-positive, cd16-negative classical monocyte
Dendritic cell
Tissue
Lung
Saliva
Blood
Developmental stage
66-year-old stage
69-year-old stage
37-year-old stage
34-year-old stage
65-year-old stage
42-year-old stage
26-year-old stage
43-year-old stage
87-year-old stage
71-year-old stage
53-year-old stage
61-year-old stage
52-year-old stage
54-year-old stage
48-year-old stage
30-year-old stage
39-year-old stage
44-year-old stage
29-year-old stage
38-year-old stage
56-year-old stage
8-year-old stage
55-year-old stage
92-year-old stage
15-year-old stage
82-year-old stage
50-year-old stage
80-year-old stage
28-year-old stage
51-year-old stage
57-year-old stage
72-year-old stage
81-year-old stage
74-year-old stage
49-year-old stage
16-year-old stage
35-year-old stage
58-year-old stage
59-year-old stage
25-year-old stage
67-year-old stage
32-year-old stage
77-year-old stage
33-year-old stage
45-year-old stage
62-year-old stage
41-year-old stage
70-year-old stage
46-year-old stage
60-year-old stage
78-year-old stage
31-year-old stage
36-year-old stage
19-year-old stage
63-year-old stage
20-year-old stage
47-year-old stage
76-year-old stage
79-year-old stage
73-year-old stage
83-year-old stage
27-year-old stage
6-year-old stage
40-year-old stage
Disease
Covid-19
Normal
Sex
Female
Male
Technology
10x 5' v2
10x 3' v3
Suspension type
Cell
Related Links
Mendeley Data Dataset:dvp4y5ttd5
covid19.cancer-pku.cn
cancer-pku.cn
UCSC Cell Browser:covid19-critical-immuno
HumanCellAtlas:5f607e50-ba22-4598-b1e9-f3d9d7a35dcc
ngdc.cncb.ac.cn
GEO series:GSE158055
CELLxGENE
1,395,601 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Oligodendrocyte precursor cell
+17
Oligodendrocyte precursor cell
Dorsolateral prefrontal cortex
Dorsolateral prefrontal cortex
69-year-old stage
+20
69-year-old stage
Normal
+1
Normal
Female
+1
Female
10x multiome
+1
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Oligodendrocyte precursor cell
Oligodendrocyte
Vascular leptomeningeal cell
Pvalb chandelier gabaergic interneuron
Lamp5 gabaergic interneuron
Microglial cell
Vip gabaergic interneuron
L2/3-6 intratelencephalic projecting glutamatergic neuron
L5 extratelencephalic projecting glutamatergic cortical neuron
L6b glutamatergic cortical neuron
Pvalb gabaergic interneuron
Near-projecting glutamatergic cortical neuron
Cerebral cortex endothelial cell
Caudal ganglionic eminence derived interneuron
Sncg gabaergic interneuron
Astrocyte of the cerebral cortex
Sst gabaergic interneuron
Corticothalamic-projecting glutamatergic cortical neuron
Tissue
Dorsolateral prefrontal cortex
Developmental stage
69-year-old stage
75-year-old stage
42-year-old stage
89-year-old stage
87-year-old stage
85-year-old stage
88-year-old stage
68-year-old stage
29-year-old stage
84-year-old stage
82-year-old stage
50-year-old stage
80-year-old stage
72-year-old stage
81-year-old stage
80 year-old and over stage
77-year-old stage
86-year-old stage
70-year-old stage
78-year-old stage
83-year-old stage
Disease
Normal
Dementia
Sex
Female
Male
Technology
10x multiome
10x 3' v3
Suspension type
Nucleus
Related Links
Adult Changes in Thought Study
BRaIN-lab
Allen Brain Map:seattle-alzheimers-disease
AWS Open Data:allen-sea-ad-atlas
Alzheimer's Disease Research Center
AD knowledge portal:syn26223298
CELLxGENE
1,388,643 cells
•
Lake et al., 2025
Cellular and Spatial Drivers of Unresolved Injury and Functional Decline in the Human Kidney
Explore
h5ad
Homo sapiens
Homo sapiens
Neutrophil
+62
Neutrophil
Renal medulla
+3
Renal medulla
66-year-old stage
+23
66-year-old stage
Chronic kidney disease
+2
Chronic kidney disease
Female
+1
Female
10x multiome
+1
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Neutrophil
Podocyte
Cycling t cell
Migratory dendritic cell
Endothelial cell of venule
Natural killer cell
Kidney collecting duct beta-intercalated cell
Parietal epithelial cell
Erythrocyte
Renal interstitial pericyte
Endothelial cell
Kidney loop of henle thin descending limb epithelial cell
Cd8-alpha-positive thymic conventional dendritic cell
Kidney interstitial fibroblast
Mast cell
Kidney loop of henle cortical thick ascending limb epithelial cell
Kidney resident macrophage
Peritubular capillary endothelial cell
Kidney collecting duct intercalated cell
Kidney interstitial myofibroblast
Renal medullary fibroblast
Classical monocyte
Epithelial cell of proximal tubule
Plasmacytoid dendritic cell, human
Neural cell
Epithelial cell of proximal tubule segment 1
Vasa recta descending limb cell
Adipocyte
Group 3 innate lymphoid cell
Cycling macrophage
Macrophage
Effector memory cd8-positive, alpha-beta t cell, terminally differentiated
Kidney distal convoluted tubule epithelial cell
Kidney collecting duct principal cell
Kidney connecting tubule epithelial cell
Kidney connecting tubule principal cell
Kidney outer medulla peritubular capillary cell
Kidney loop of henle thick ascending limb epithelial cell
Vasa recta ascending limb cell
Vasa recta cell
Epithelial cell of proximal tubule segment 3
Macula densa epithelial cell
Plasma cell
Kidney cortex collecting duct principal cell
Vein endothelial cell
Juxtaglomerular complex cell
Mesangial cell
Naive regulatory t cell
Epithelial cell of proximal tubule segment 2
Kidney collecting duct alpha-intercalated cell
Cd8-alpha-negative thymic conventional dendritic cell
B cell
Naive thymus-derived cd4-positive, alpha-beta t cell
Mucosal invariant t cell
Vascular associated smooth muscle cell
Kidney loop of henle thin ascending limb epithelial cell
Glomerular capillary endothelial cell
Papillary tips cell
Adventitial fibroblast
Effector memory cd8-positive, alpha-beta t cell
Kidney efferent arteriole endothelial cell
Non-classical monocyte
Kidney cortex peritubular capillary cell
Tissue
Renal medulla
Renal papilla
Kidney
Cortex of kidney
Developmental stage
66-year-old stage
69-year-old stage
43-year-old stage
Sixth decade stage
54-year-old stage
29-year-old stage
56-year-old stage
Fifth decade stage
57-year-old stage
Third decade stage
49-year-old stage
14-year-old stage
Seventh decade stage
59-year-old stage
64-year-old stage
45-year-old stage
70-year-old stage
36-year-old stage
Fourth decade stage
63-year-old stage
Eighth decade stage
76-year-old stage
Tenth decade stage
Ninth decade stage
Disease
Chronic kidney disease
Normal
Acute kidney failure
Sex
Female
Male
Technology
10x multiome
10x 3' v3
Suspension type
Nucleus
Related Links
protocols.io:10x-genomics-single-nucleus-rna-sequencing-for-tra-e6nvw99wzgmk/v3
protocols.io:isolation-of-single-nuclei-from-solid-tissues-5qpvonb6bl4o/v1
protocols.io:10x-genomics-single-nucleus-multiome-rna-atac-assa-5qpvoby69l4o/v2
kpmp.org
Github:KPMP-Scientific/KPMP-Atlas-v2
protocols.io:single-cell-rna-sequencing-scrna-seq-eq2ly3zjpgx9/v1
CELLxGENE
1,378,211 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Oligodendrocyte precursor cell
+17
Oligodendrocyte precursor cell
Middle temporal gyrus
Middle temporal gyrus
69-year-old stage
+23
69-year-old stage
Normal
+1
Normal
Female
+1
Female
10x multiome
+1
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Oligodendrocyte precursor cell
Oligodendrocyte
Vascular leptomeningeal cell
Pvalb chandelier gabaergic interneuron
Lamp5 gabaergic interneuron
Microglial cell
Vip gabaergic interneuron
L2/3-6 intratelencephalic projecting glutamatergic neuron
L5 extratelencephalic projecting glutamatergic cortical neuron
L6b glutamatergic cortical neuron
Pvalb gabaergic interneuron
Near-projecting glutamatergic cortical neuron
Cerebral cortex endothelial cell
Caudal ganglionic eminence derived interneuron
Sncg gabaergic interneuron
Astrocyte of the cerebral cortex
Sst gabaergic interneuron
Corticothalamic-projecting glutamatergic cortical neuron
Tissue
Middle temporal gyrus
Developmental stage
69-year-old stage
75-year-old stage
65-year-old stage
42-year-old stage
89-year-old stage
43-year-old stage
87-year-old stage
85-year-old stage
88-year-old stage
68-year-old stage
29-year-old stage
84-year-old stage
82-year-old stage
50-year-old stage
80-year-old stage
72-year-old stage
81-year-old stage
80 year-old and over stage
77-year-old stage
86-year-old stage
70-year-old stage
60-year-old stage
78-year-old stage
83-year-old stage
Disease
Normal
Dementia
Sex
Female
Male
Technology
10x multiome
10x 3' v3
Suspension type
Nucleus
Related Links
Alzheimer's Disease Research Center
Adult Changes in Thought Study
Allen Brain Map:seattle-alzheimers-disease
AWS Open Data:allen-sea-ad-atlas
BRaIN-lab
AD knowledge portal:syn26223298
CELLxGENE
1,358,573 cells
•
Oliver et al., 2024
Single-cell integration reveals metaplasia in inflammatory gut diseases
Explore
h5ad
Homo sapiens
Homo sapiens
Angiogenic pericyte
+90
Angiogenic pericyte
Ascending colon
+35
Ascending colon
66-year-old stage
+90
66-year-old stage
Gastric cancer
+5
Gastric cancer
Female
+1
Female
10x 3' v1
+5
10x 3' v1
Cell
Cell
Organism
Homo sapiens
Cell type
Angiogenic pericyte
Germinal center b cell
Muscle cell
Cycling t cell
Dendritic cell, human
Igm plasma cell
Intestine goblet cell
Endothelial cell of lymphatic vessel
Erythrocyte
Follicular dendritic cell
Gamma-delta t cell
Best4+ enterocyte
Endothelial cell
Afferent neuron
Pro-b cell
Interstitial cell of cajal
Type g enteroendocrine cell
Mast cell
Iga plasma cell
Enteric neuron
Immature pericyte
Basal cell
Endothelial cell of artery
Capillary endothelial cell
Melanocyte
Ionocyte
Smooth muscle cell
Paneth cell
Enteroglial cell
Plasmacytoid dendritic cell, human
Epithelial cell
Inhibitory motor neuron
Peptic cell
Igg plasma cell
Fibroblast of gingiva
Precursor b cell
Enteroendocrine cell
Glandular cell of esophagus
Mesodermal cell
Cd8-positive, alpha-beta memory t cell
Myoepithelial cell
Group 3 innate lymphoid cell
Naive thymus-derived cd8-positive, alpha-beta t cell
T-helper 17 cell
Macrophage
Intestinal crypt stem cell
Memory b cell
Cd16-positive, cd56-dim natural killer cell, human
Regulatory t cell
Neuroblast (sensu vertebrata)
Type ec enteroendocrine cell
Fibroblastic reticular cell
Plasmablast
Parietal cell
Tuft cell of small intestine
Keratinocyte
Trem2-positive macrophage
Acinar cell of salivary gland
Enterocyte
Salivary gland glandular cell
Vein endothelial cell
Mesenchymal cell
Gastrointestinal tract (lamina propria) macrophage
Motor neuron
Neutrophil progenitor cell
Eosinophil
Megakaryocyte
Langerhans cell
Interneuron
Transit amplifying cell
T follicular helper cell
Cd4-positive, alpha-beta memory t cell
Mesothelial cell
Pericyte
Mucous neck cell of gastric gland
Progenitor cell
Type x enteroendocrine cell
Foveolar cell of stomach
Naive thymus-derived cd4-positive, alpha-beta t cell
Mucosal invariant t cell
Monocyte
Cycling basal cell
Vascular associated smooth muscle cell
Naive b cell
Myofibroblast cell
Conventional dendritic cell
Fibroblast
Colonocyte
Cd16-negative, cd56-bright natural killer cell, human
M cell of gut
Effector memory cd8-positive, alpha-beta t cell
Tissue
Ascending colon
Colonic mucosa
Stomach
Duodenum
Colonic epithelium
Ileal epithelium
Rectosigmoid junction
Pyloric antrum
Caecum
Small intestine
Gingiva
Ileum
Ileum lamina propria
Lamina propria of mucosa of colon
Colon
Epithelium of rectum
Lamina propria of small intestine
Epithelium of esophagus
Intestine
Buccal mucosa
Body of stomach
Vermiform appendix
Epithelium of small intestine
Pylorus
Rectum
Esophagus
Jejunum
Duodenal epithelium
Transverse colon
Periodontium
Parotid gland
Descending colon
Sigmoid colon
Labial gland
Epithelium of stomach
Mesenteric lymph node
Developmental stage
66-year-old stage
69-year-old stage
Carnegie stage 19
37-year-old stage
75-year-old stage
Pediatric stage
19th week post-fertilization stage
21-year-old stage
13-year-old stage
21st week post-fertilization stage
34-year-old stage
65-year-old stage
26-year-old stage
43-year-old stage
Sixth decade stage
87-year-old stage
13th week post-fertilization stage
85-year-old stage
61-year-old stage
2-year-old stage
52-year-old stage
54-year-old stage
68-year-old stage
48-year-old stage
30-year-old stage
39-year-old stage
44-year-old stage
29-year-old stage
56-year-old stage
Fifth decade stage
55-year-old stage
84-year-old stage
15th week post-fertilization stage
50-year-old stage
80-year-old stage
28-year-old stage
51-year-old stage
17th week post-fertilization stage
57-year-old stage
12-year-old stage
72-year-old stage
12th week post-fertilization stage
Third decade stage
16th week post-fertilization stage
81-year-old stage
9th week post-fertilization stage
74-year-old stage
9-year-old stage
10th week post-fertilization stage
14-year-old stage
24-year-old stage
23-year-old stage
35-year-old stage
Seventh decade stage
58-year-old stage
Embryonic stage
59-year-old stage
Adult stage
67-year-old stage
18th week post-fertilization stage
Carnegie stage 17
2-month-old stage
32-year-old stage
77-year-old stage
33-year-old stage
Carnegie stage 22
45-year-old stage
62-year-old stage
86-year-old stage
41-year-old stage
70-year-old stage
46-year-old stage
60-year-old stage
31-year-old stage
Fourth decade stage
22-year-old stage
Newborn stage (0-28 days)
63-year-old stage
Carnegie stage 16
Eighth decade stage
76-year-old stage
Prime adult stage
5-year-old stage
11-year-old stage
6-year-old stage
Young adult stage
10-year-old stage
Carnegie stage 18
4-year-old stage
11th week post-fertilization stage
Juvenile stage (5-14 yo)
Disease
Gastric cancer
Inflammatory bowel disease
Colorectal cancer
Ulcerative colitis
Normal
Crohn disease
Sex
Female
Male
Technology
10x 3' v1
10x 5' v2
10x 5' transcription profiling
10x 5' v1
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
teichlab.org
ArrayExpress BioStudies:E-MTAB-14050
CELLxGENE
1,350,748 cells
•
Gong et al., 2025
Multi-omic profiling reveals age-related immune dynamics in healthy adults
Explore
h5ad
Homo sapiens
Homo sapiens
Central memory cd4-positive, alpha-beta t cell
+37
Central memory cd4-positive, alpha-beta t cell
Blood
Blood
65-year-old stage
+10
65-year-old stage
Normal
Normal
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Central memory cd4-positive, alpha-beta t cell
T cell
Cd1c-positive myeloid dendritic cell
Mature gamma-delta t cell
Natural killer cell
Erythrocyte
Platelet
Cd141-positive myeloid dendritic cell
Effector memory cd4-positive, alpha-beta t cell
Intermediate monocyte
Cd8aa(i) thymocyte
Plasmacytoid dendritic cell
Basophil mast progenitor cell
Cd8-positive, alpha-beta memory t cell
Be cell
Memory regulatory t cell
Naive thymus-derived cd8-positive, alpha-beta t cell
Memory b cell
Axl+ dendritic cell, human
Cd16-positive, cd56-dim natural killer cell, human
Innate lymphoid cell
Common myeloid progenitor
Plasma cell
Naive regulatory t cell
Memory ccr4-positive regulatory t cell
Cd14-low, cd16-positive monocyte
Cd4-positive, alpha-beta memory t cell
Naive thymus-derived cd4-positive, alpha-beta t cell
Common lymphoid progenitor
Mucosal invariant t cell
Cd8-positive, alpha-beta regulatory t cell
Transitional stage b cell
Cd14-positive, cd16-negative classical monocyte
Central memory cd8-positive, alpha-beta t cell
Naive b cell
Double negative thymocyte
Cd16-negative, cd56-bright natural killer cell, human
Effector memory cd8-positive, alpha-beta t cell
Tissue
Blood
Developmental stage
65-year-old stage
61-year-old stage
56-year-old stage
55-year-old stage
57-year-old stage
58-year-old stage
59-year-old stage
64-year-old stage
62-year-old stage
60-year-old stage
63-year-old stage
Disease
Normal
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
Github:aifimmunology/IHA-Figure
apps.allenimmunology.org
GEO series:GSE271896
dbGaP Study:phs003841
Github:aifimmunology/sound-life-scrna-analysis
CELLxGENE collection:77f9d7e9-5675-49c3-abed-ce02f39eef1b
CELLxGENE
1,332,155 cells
•
Lee et al., 2024
Single-cell atlas of transcriptomic vulnerability across multiple neurodegenerative and neuropsychiatric diseases
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+24
T cell
Dorsolateral prefrontal cortex
Dorsolateral prefrontal cortex
66-year-old stage
+83
66-year-old stage
Type 1 diabetes mellitus
+3
Type 1 diabetes mellitus
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
T cell
L2/3 intratelencephalic projecting glutamatergic neuron
L5/6 near-projecting glutamatergic neuron
Natural killer cell
Oligodendrocyte precursor cell
Endothelial cell
Oligodendrocyte
L6b glutamatergic neuron of the primary motor cortex
Vascular leptomeningeal cell
Smooth muscle cell
Lamp5 gabaergic interneuron
Microglial cell
Vip gabaergic interneuron
L2/3-6 intratelencephalic projecting glutamatergic neuron
Plasma cell
L5 extratelencephalic projecting glutamatergic cortical neuron
L6 corticothalamic-projecting glutamatergic cortical neuron
Pvalb gabaergic interneuron
B cell
Pericyte
Perivascular macrophage
L6 intratelencephalic projecting glutamatergic neuron
Astrocyte
Sst gabaergic interneuron
Gabaergic neuron
Tissue
Dorsolateral prefrontal cortex
Developmental stage
66-year-old stage
69-year-old stage
37-year-old stage
75-year-old stage
21-year-old stage
13-year-old stage
34-year-old stage
65-year-old stage
42-year-old stage
26-year-old stage
89-year-old stage
43-year-old stage
71-year-old stage
85-year-old stage
53-year-old stage
61-year-old stage
2-year-old stage
88-year-old stage
52-year-old stage
54-year-old stage
3-month-old stage
48-year-old stage
30-year-old stage
44-year-old stage
17-year-old stage
29-year-old stage
38-year-old stage
56-year-old stage
8-year-old stage
55-year-old stage
84-year-old stage
15-year-old stage
50-year-old stage
28-year-old stage
51-year-old stage
57-year-old stage
12-year-old stage
72-year-old stage
81-year-old stage
74-year-old stage
6-month-old stage
80 year-old and over stage
49-year-old stage
14-year-old stage
24-year-old stage
16-year-old stage
23-year-old stage
35-year-old stage
58-year-old stage
59-year-old stage
25-year-old stage
67-year-old stage
2-month-old stage
3-year-old stage
32-year-old stage
64-year-old stage
45-year-old stage
62-year-old stage
86-year-old stage
41-year-old stage
70-year-old stage
46-year-old stage
60-year-old stage
78-year-old stage
18-year-old stage
31-year-old stage
36-year-old stage
1-month-old stage
22-year-old stage
19-year-old stage
63-year-old stage
20-year-old stage
47-year-old stage
4-month-old stage
76-year-old stage
79-year-old stage
73-year-old stage
83-year-old stage
5-year-old stage
27-year-old stage
6-year-old stage
40-year-old stage
10-year-old stage
4-year-old stage
Disease
Type 1 diabetes mellitus
Atherosclerosis
Normal
Type 2 diabetes mellitus
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
DOI:10.1101/2024.11.04.24316495
adknowledgeportal.synapse.org
psych-ad.org
DOI:10.1101/2024.11.06.24316592
DOI:10.1101/2024.11.01.24316586
DOI:10.1101/2024.11.01.24316589
DOI:10.1101/2024.11.02.24316590
DOI:10.1101/2025.01.29.635498
DOI:10.1101/2023.05.19.541376
DOI:10.1101/2023.03.17.533005
DOI:10.1038/s41597-025-04687-5
Github:DiseaseNeuroGenomics/PsychADxD
CELLxGENE
1,322,061 cells
•
Gong et al., 2025
Multi-omic profiling reveals age-related immune dynamics in healthy adults
Explore
h5ad
Homo sapiens
Homo sapiens
Central memory cd4-positive, alpha-beta t cell
+37
Central memory cd4-positive, alpha-beta t cell
Blood
Blood
66-year-old stage
+8
66-year-old stage
Cytomegalovirus infection
Cytomegalovirus infection
Male
Male
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Central memory cd4-positive, alpha-beta t cell
T cell
Cd1c-positive myeloid dendritic cell
Mature gamma-delta t cell
Natural killer cell
Erythrocyte
Platelet
Cd141-positive myeloid dendritic cell
Effector memory cd4-positive, alpha-beta t cell
Intermediate monocyte
Cd8aa(i) thymocyte
Plasmacytoid dendritic cell
Basophil mast progenitor cell
Cd8-positive, alpha-beta memory t cell
Be cell
Memory regulatory t cell
Naive thymus-derived cd8-positive, alpha-beta t cell
Memory b cell
Axl+ dendritic cell, human
Cd16-positive, cd56-dim natural killer cell, human
Innate lymphoid cell
Common myeloid progenitor
Plasma cell
Naive regulatory t cell
Memory ccr4-positive regulatory t cell
Cd14-low, cd16-positive monocyte
Cd4-positive, alpha-beta memory t cell
Naive thymus-derived cd4-positive, alpha-beta t cell
Common lymphoid progenitor
Mucosal invariant t cell
Cd8-positive, alpha-beta regulatory t cell
Transitional stage b cell
Cd14-positive, cd16-negative classical monocyte
Central memory cd8-positive, alpha-beta t cell
Naive b cell
Double negative thymocyte
Cd16-negative, cd56-bright natural killer cell, human
Effector memory cd8-positive, alpha-beta t cell
Tissue
Blood
Developmental stage
66-year-old stage
65-year-old stage
56-year-old stage
55-year-old stage
57-year-old stage
58-year-old stage
59-year-old stage
64-year-old stage
60-year-old stage
Disease
Cytomegalovirus infection
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
Github:aifimmunology/sound-life-scrna-analysis
Github:aifimmunology/IHA-Figure
apps.allenimmunology.org
CELLxGENE collection:77f9d7e9-5675-49c3-abed-ce02f39eef1b
GEO series:GSE271896
dbGaP Study:phs003841
CELLxGENE
1,283,972 cells
•
Salcher et al., 2022
High-resolution single-cell atlas reveals diversity and plasticity of tissue-resident neutrophils in non-small cell lung cancer
Explore
h5ad
Homo sapiens
Homo sapiens
Neutrophil
+32
Neutrophil
Pleural effusion
+5
Pleural effusion
66-year-old stage
+56
66-year-old stage
Lung adenocarcinoma
+4
Lung adenocarcinoma
Female
+1
Female
Gexscope technology
+8
Gexscope technology
Cell
Cell
Organism
Homo sapiens
Cell type
Neutrophil
Club cell
Cd1c-positive myeloid dendritic cell
Stromal cell
Natural killer cell
Endothelial cell of lymphatic vessel
Mast cell
Cd8-positive, alpha-beta t cell
Capillary endothelial cell
Classical monocyte
Smooth muscle cell
Plasmacytoid dendritic cell
Bronchus fibroblast of lung
Macrophage
Regulatory t cell
Pulmonary alveolar type 1 cell
Myeloid cell
Fibroblast of lung
Alveolar macrophage
Plasma cell
Cd4-positive, alpha-beta t cell
Vein endothelial cell
Malignant cell
Mesothelial cell
B cell
Pericyte
Pulmonary artery endothelial cell
Epithelial cell of lung
Multiciliated epithelial cell
Conventional dendritic cell
Dendritic cell
Pulmonary alveolar type 2 cell
Non-classical monocyte
Tissue
Pleural effusion
Lung
Liver
Brain
Adrenal tissue
Lymph node
Developmental stage
66-year-old stage
69-year-old stage
37-year-old stage
75-year-old stage
21-year-old stage
65-year-old stage
42-year-old stage
26-year-old stage
43-year-old stage
71-year-old stage
53-year-old stage
61-year-old stage
52-year-old stage
54-year-old stage
68-year-old stage
48-year-old stage
29-year-old stage
56-year-old stage
55-year-old stage
82-year-old stage
50-year-old stage
90-year-old stage
80-year-old stage
28-year-old stage
51-year-old stage
57-year-old stage
72-year-old stage
74-year-old stage
49-year-old stage
23-year-old stage
35-year-old stage
58-year-old stage
59-year-old stage
25-year-old stage
67-year-old stage
32-year-old stage
77-year-old stage
64-year-old stage
45-year-old stage
62-year-old stage
86-year-old stage
41-year-old stage
70-year-old stage
46-year-old stage
60-year-old stage
78-year-old stage
31-year-old stage
36-year-old stage
22-year-old stage
63-year-old stage
20-year-old stage
47-year-old stage
76-year-old stage
79-year-old stage
73-year-old stage
83-year-old stage
40-year-old stage
Disease
Lung adenocarcinoma
Chronic obstructive pulmonary disease
Squamous cell lung carcinoma
Normal
Non-small cell lung carcinoma
Sex
Female
Male
Technology
Gexscope technology
10x 3' v1
Bd rhapsody whole transcriptome analysis
Indrop
10x 5' v1
Smart-seq2
10x 3' v3
Drop-seq
10x 3' v2
Suspension type
Cell
Related Links
Zenodo record:7227571
CELLxGENE
1,281,499 cells
•
Wells et al., 2025
Multimodal profiling reveals tissue-directed signatures of human immune cells altered with age
Explore
h5ad
Homo sapiens
Homo sapiens
Central memory cd4-positive, alpha-beta t cell
+30
Central memory cd4-positive, alpha-beta t cell
Skin of body
+13
Skin of body
75-year-old stage
+16
75-year-old stage
Normal
Normal
Female
+1
Female
10x 5' v2
+1
10x 5' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Central memory cd4-positive, alpha-beta t cell
Germinal center b cell
Gamma-delta t cell
Mast cell
Effector memory cd4-positive, alpha-beta t cell
Classical monocyte
Plasmacytoid dendritic cell
Cd8-positive, alpha-beta memory t cell
Group 3 innate lymphoid cell
Naive thymus-derived cd8-positive, alpha-beta t cell
Effector memory cd4-positive, alpha-beta t cell, terminally differentiated
Macrophage
Effector memory cd8-positive, alpha-beta t cell, terminally differentiated
Cd4-positive, cd25-positive, alpha-beta regulatory t cell
Memory b cell
Cd16-positive, cd56-dim natural killer cell, human
Immature innate lymphoid cell
Group 1 innate lymphoid cell
Plasmablast
Plasma cell
Cd4-positive, alpha-beta memory t cell
B cell
Progenitor cell
Naive thymus-derived cd4-positive, alpha-beta t cell
Mucosal invariant t cell
Central memory cd8-positive, alpha-beta t cell
Naive b cell
Conventional dendritic cell
Cd16-negative, cd56-bright natural killer cell, human
Effector memory cd8-positive, alpha-beta t cell
Non-classical monocyte
Tissue
Skin of body
Lung
Inguinal lymph node
Colonic epithelium
Jejunal epithelium
Epithelial lining fluid
Liver
Thoracic lymph node
Lamina propria of mucosa of colon
Spleen
Jejunum lamina propria
Blood
Bone marrow
Mesenteric lymph node
Developmental stage
75-year-old stage
Sixth decade stage
68-year-old stage
48-year-old stage
56-year-old stage
Fifth decade stage
Third decade stage
23-year-old stage
25-year-old stage
67-year-old stage
33-year-old stage
64-year-old stage
Fourth decade stage
20-year-old stage
Eighth decade stage
73-year-old stage
27-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 5' v2
10x 3' v3
Suspension type
Cell
Related Links
GEO series:GSE299043
Github:YosefLab/CZI-Immuneaging
HumanCellAtlas:6179c38c-9987-4e7c-a4bb-d34cf33a3c3f
CELLxGENE
1,265,624 cells
•
Kock et al., 2025
Asian diversity in human immune cells
Explore
h5ad
Homo sapiens
Homo sapiens
Central memory cd4-positive, alpha-beta t cell
+31
Central memory cd4-positive, alpha-beta t cell
Blood
Blood
66-year-old stage
+54
66-year-old stage
Normal
Normal
Female
+1
Female
10x 5' v2
10x 5' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Central memory cd4-positive, alpha-beta t cell
T cell
Cd1c-positive myeloid dendritic cell
Natural killer cell
Double negative t regulatory cell
Gamma-delta t cell
Cd8-positive, alpha-beta t cell
Platelet
Cd141-positive myeloid dendritic cell
Effector memory cd4-positive, alpha-beta t cell
Pre-conventional dendritic cell
Plasmacytoid dendritic cell
Cd8-positive, alpha-beta memory t cell
Cd4-positive, alpha-beta cytotoxic t cell
Cd8-positive, alpha-beta cytotoxic t cell
Naive thymus-derived cd8-positive, alpha-beta t cell
Memory b cell
Cd16-positive, cd56-dim natural killer cell, human
Innate lymphoid cell
Regulatory t cell
Mature b cell
Myeloid cell
Hematopoietic stem cell
Plasma cell
Cd4-positive, alpha-beta t cell
Cd14-positive monocyte
Cd14-low, cd16-positive monocyte
B cell
Naive thymus-derived cd4-positive, alpha-beta t cell
Mucosal invariant t cell
Naive b cell
Cd16-negative, cd56-bright natural killer cell, human
Tissue
Blood
Developmental stage
66-year-old stage
69-year-old stage
37-year-old stage
75-year-old stage
21-year-old stage
34-year-old stage
65-year-old stage
42-year-old stage
26-year-old stage
43-year-old stage
71-year-old stage
53-year-old stage
61-year-old stage
52-year-old stage
54-year-old stage
68-year-old stage
48-year-old stage
30-year-old stage
39-year-old stage
44-year-old stage
29-year-old stage
38-year-old stage
56-year-old stage
55-year-old stage
50-year-old stage
28-year-old stage
51-year-old stage
57-year-old stage
72-year-old stage
49-year-old stage
24-year-old stage
23-year-old stage
35-year-old stage
58-year-old stage
59-year-old stage
25-year-old stage
67-year-old stage
32-year-old stage
77-year-old stage
33-year-old stage
64-year-old stage
45-year-old stage
62-year-old stage
41-year-old stage
46-year-old stage
60-year-old stage
31-year-old stage
36-year-old stage
22-year-old stage
19-year-old stage
63-year-old stage
47-year-old stage
73-year-old stage
27-year-old stage
40-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 5' v2
Suspension type
Cell
Related Links
Github:prabhakarlab/AIDA_Phase1
Zenodo record:14722572
HumanCellAtlas:35d5b057-3daf-4ccd-8112-196194598893
celltype.info
HumanCellAtlas:f0f89c14-7460-4bab-9d42-22228a91f185
1
2
3
4
5
6
…
390
391
Close