Homo sapiens

T cell Granulocyte Endothelial cell Extravillous trophoblast Decidual natural killer cell, human Placental villous trophoblast Macrophage Cd16-positive, cd56-dim natural killer cell, human Innate lymphoid cell Plasma cell Glandular secretory epithelial cell Pericyte Hofbauer cell Monocyte Decidual cell Syncytiotrophoblast cell Conventional dendritic cell Fibroblast Cd16-negative, cd56-bright natural killer cell, human

Decidua Placenta Blood

Carnegie stage 14 Carnegie stage 23 10th week post-fertilization stage Carnegie stage 22 Carnegie stage 18

Normal

Female Male

Smart-seq2 10x 3' v2

Cell

Homo sapiens

Intestine goblet cell Best4+ enterocyte Type g enteroendocrine cell Epithelial cell Peptic cell Enteroendocrine cell Type ec enteroendocrine cell Parietal cell Enterocyte Mucous neck cell of gastric gland Type x enteroendocrine cell Foveolar cell of stomach

Stomach Pyloric antrum Body of stomach Pylorus

66-year-old stage 69-year-old stage 75-year-old stage 65-year-old stage 43-year-old stage 61-year-old stage 54-year-old stage 48-year-old stage 44-year-old stage 56-year-old stage 55-year-old stage 15th week post-fertilization stage 80-year-old stage 51-year-old stage 17th week post-fertilization stage 57-year-old stage 72-year-old stage Seventh decade stage 58-year-old stage 59-year-old stage 45-year-old stage 62-year-old stage 41-year-old stage 70-year-old stage 46-year-old stage 60-year-old stage 31-year-old stage 63-year-old stage Carnegie stage 16 76-year-old stage

Gastric cancer Normal

Female Male

10x 5' v2 10x 5' transcription profiling 10x 3' v2

Cell

Homo sapiens

Astrocyte of the cerebral cortex

Middle temporal gyrus

69-year-old stage 75-year-old stage 65-year-old stage 89-year-old stage 87-year-old stage 85-year-old stage 88-year-old stage 68-year-old stage 29-year-old stage 84-year-old stage 82-year-old stage 50-year-old stage 80-year-old stage 72-year-old stage 81-year-old stage 80 year-old and over stage Adult stage 77-year-old stage 86-year-old stage 70-year-old stage 60-year-old stage 78-year-old stage 83-year-old stage

Normal Dementia

Female Male

10x multiome 10x 3' v3

Nucleus

Mus musculus

Granulosa cell Supporting cell Erythrocyte Endothelial cell Sertoli cell Epithelial cell Neural cell Ovarian surface epithelial cell Interstitial cell of ovary Mural cell Mesenchymal cell Mesothelial cell Germ cell Leydig cell Hematopoietic cell Skeletal muscle fiber

Mesonephros Gonad

Theiler stage 22 Theiler stage 27 Theiler stage 24 5-day-old stage Theiler stage 19 Theiler stage 26 Theiler stage 20 Theiler stage 21

Normal

Female

10x 5' v1 10x 3' v3 10x 3' v2

Cell

Homo sapiens

Endothelial cell Pancreatic acinar cell Pp cell Pancreatic a cell Pancreatic d cell Pancreatic stellate cell Type b pancreatic cell Pancreatic epsilon cell Pancreatic ductal cell

Islet of langerhans

21-year-old stage 13-year-old stage 39-year-old stage 17-year-old stage 29-year-old stage 8-year-old stage 15-year-old stage 14-year-old stage 24-year-old stage 23-year-old stage 35-year-old stage 3-year-old stage 18-year-old stage 1-year-old stage 22-year-old stage 5-year-old stage 27-year-old stage 10-year-old stage 4-year-old stage

Type 1 diabetes mellitus Normal

Female Male

10x 3' v3 10x 3' v2

Cell

Homo sapiens

Retinal pigment epithelial cell

Chorioretinal region

69-year-old stage 21-year-old stage 34-year-old stage 65-year-old stage 43-year-old stage 71-year-old stage 53-year-old stage 68-year-old stage 30-year-old stage 82-year-old stage 50-year-old stage 72-year-old stage 81-year-old stage 16-year-old stage 58-year-old stage 25-year-old stage 90 year-old and over stage 32-year-old stage 77-year-old stage 64-year-old stage 62-year-old stage 86-year-old stage 46-year-old stage 60-year-old stage Newborn stage (0-28 days) 63-year-old stage 47-year-old stage 11-year-old stage 27-year-old stage 10-year-old stage

Normal

Female Male

10x 5' v2 10x 3' v3

Nucleus

Homo sapiens

Brainstem motor neuron Oligodendrocyte precursor cell Endothelial cell Inhibitory interneuron Ependymal cell Microglial cell Granule cell Gabaergic interneuron Meningeal macrophage Glial cell Interneuron Choroid plexus epithelial cell Bergmann glial cell Pericyte Cerebellar granule cell precursor Purkinje cell Astrocyte

Cerebellum

21st week post-fertilization stage 14th week post-fertilization stage 20th week post-fertilization stage 17th week post-fertilization stage 12th week post-fertilization stage 9th week post-fertilization stage 10th week post-fertilization stage 18th week post-fertilization stage 11th week post-fertilization stage

Normal

Female Male

Split-seq

Cell Nucleus

Homo sapiens

Endothelial cell of hepatic sinusoid T cell Neutrophil Hepatocyte Natural killer cell Erythrocyte Gamma-delta t cell Kupffer cell Platelet Cycling plasma cell Macrophage Mature b cell Cholangiocyte Hematopoietic stem cell Plasma cell Cycling myeloid cell Conventional dendritic cell Mononuclear phagocyte

Right lobe of liver Caudate lobe of liver

69-year-old stage 26-year-old stage 57-year-old stage 15-19 year-old Late adult stage Prime adult stage Child stage (1-4 yo) Young adult stage Juvenile stage (5-14 yo)

Normal

Female Male

10x 5' v2 10x 5' v1 10x 3' v3 10x 3' v2

Cell

Callithrix jacchus

Astrocyte

Dorsolateral prefrontal cortex Parietal cortex Primary visual cortex Temporal cortex Prefrontal cortex Temporal lobe Primary somatosensory cortex Primary auditory cortex Brodmann (1909) area 23 Primary motor cortex Secondary visual cortex

Prime adult stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

T cell Luminal cell of prostate epithelium Natural killer cell Endothelial cell of lymphatic vessel Cytotoxic t cell Endothelial cell Prostate neuroendocrine cell Epithelial cell of prostate Mast cell Plasmacytoid dendritic cell Macrophage Regulatory t cell Fibroblast of connective tissue of prostate Myeloid cell Glial cell Smooth muscle cell of prostate Plasma cell Vein endothelial cell Ciliated epithelial cell B cell Pericyte Monocyte Vascular associated smooth muscle cell Myelinating schwann cell Basal cell of prostate epithelium Club-like cell of the urethral epithelium

Prostate gland

69-year-old stage 75-year-old stage 71-year-old stage 61-year-old stage 54-year-old stage 68-year-old stage 72-year-old stage 59-year-old stage 64-year-old stage 45-year-old stage 62-year-old stage 70-year-old stage 46-year-old stage 60-year-old stage 63-year-old stage

Prostatic acinar adenocarcinoma

Male

10x 3' v3

Cell

Homo sapiens

Merkel cell Melanocyte Hair follicular keratinocyte Basal cell of epidermis Keratinocyte Spinous cell of epidermis Granular cell of epidermis Hematopoietic cell

Skin of prepuce of penis Skin of trunk Skin of scalp

Adult stage Newborn stage (0-28 days)

Normal

Female Male

10x 3' v2

Cell

Homo sapiens

Extravillous trophoblast Placental villous trophoblast Syncytiotrophoblast cell

Placenta

Organogenesis stage

Normal

10x 3' v3

Cell