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Cell
896
Nucleus
659
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Asap
43
Bgee
40
Cellxgene
2,080
Single cell portal
183
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Most cells
Fewest cells
2346
datasets
CELLxGENE
71,689 cells
•
Chou et al., 2022
Aortic Cellular Diversity and Quantitative Genome-Wide Association Study Trait Prioritization Through Single-Nuclear RNA Sequencing of the Aneurysmal Human Aorta
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell of lymphatic vessel
+10
Endothelial cell of lymphatic vessel
Ascending aorta
Ascending aorta
69-year-old stage
+9
69-year-old stage
Aortic aneurysm
+1
Aortic aneurysm
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Endothelial cell of lymphatic vessel
Endothelial cell
Leukocyte
Lymphocyte
Adipocyte
Macrophage
Mesothelial cell
Pericyte
Neuron
Vascular associated smooth muscle cell
Fibroblast
Tissue
Ascending aorta
Developmental stage
69-year-old stage
71-year-old stage
53-year-old stage
52-year-old stage
56-year-old stage
55-year-old stage
58-year-old stage
64-year-old stage
63-year-old stage
40-year-old stage
Disease
Aortic aneurysm
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
GEO series:GSE207784
BroadInstitute Single-Cell Portal:SCP1909
CELLxGENE
71,657 cells
Explore
h5ad
Homo sapiens
Homo sapiens
Arachnoid barrier cell
+8
Arachnoid barrier cell
Forebrain meninges
+2
Forebrain meninges
13th week post-fertilization stage
+8
13th week post-fertilization stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Arachnoid barrier cell
Mesenchyme condensation cell
Leptomeningeal cell
Mesenchymal cell
Circulating fibrocyte
Fibroblast of choroid plexus
Mesothelial cell of dura mater
Fibroblast
Chondrocyte
Tissue
Forebrain meninges
Brain meninx
Meninx
Developmental stage
13th week post-fertilization stage
12th week post-fertilization stage
Carnegie stage 20
9th week post-fertilization stage
Carnegie stage 23
10th week post-fertilization stage
Carnegie stage 21
Carnegie stage 16
Carnegie stage 18
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
Github:linnarsson-lab/human-meninges-development
CELLxGENE
71,492 cells
•
Fachrul et al., 2026
Ancestral and environmental diversity shape the immune landscape in Indonesia
Explore
h5ad
Homo sapiens
Homo sapiens
Cd14-positive, cd16-positive monocyte
+7
Cd14-positive, cd16-positive monocyte
Blood
Blood
37-year-old stage
+40
37-year-old stage
Normal
Normal
Female
+1
Female
10x 5' v2
10x 5' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Cd14-positive, cd16-positive monocyte
Platelet
Plasmacytoid dendritic cell
Cd14-positive monocyte
Megakaryocyte
B cell
Monocyte
Conventional dendritic cell
Tissue
Blood
Developmental stage
37-year-old stage
21-year-old stage
34-year-old stage
42-year-old stage
26-year-old stage
43-year-old stage
53-year-old stage
52-year-old stage
54-year-old stage
48-year-old stage
30-year-old stage
39-year-old stage
44-year-old stage
29-year-old stage
38-year-old stage
55-year-old stage
50-year-old stage
28-year-old stage
51-year-old stage
57-year-old stage
49-year-old stage
24-year-old stage
23-year-old stage
35-year-old stage
58-year-old stage
25-year-old stage
32-year-old stage
33-year-old stage
45-year-old stage
41-year-old stage
46-year-old stage
60-year-old stage
18-year-old stage
31-year-old stage
36-year-old stage
22-year-old stage
19-year-old stage
20-year-old stage
47-year-old stage
27-year-old stage
40-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 5' v2
Suspension type
Cell
CELLxGENE
71,183 cells
•
Yao et al., 2021
A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex
Explore
h5ad
Mus musculus
Mus musculus
Glutamatergic neuron
+8
Glutamatergic neuron
Primary motor cortex
Primary motor cortex
Prime adult stage
Prime adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Mus musculus
Cell type
Glutamatergic neuron
Oligodendrocyte precursor cell
Endothelial cell
Oligodendrocyte
Smooth muscle cell
Macrophage
Leptomeningeal cell
Astrocyte
Gabaergic neuron
Tissue
Primary motor cortex
Developmental stage
Prime adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
DOI:10.17504/protocols.io.bcbrism6
NeMo archive:dat-ch1nqb7
DOI:10.17504/protocols.io.pjvdkn6
Bgee
71,032 cells
•
Wang et al., 2020
Single-cell transcriptomic atlas of the human endometrium during the menstrual cycle
Explore
scRNA-Seq droplet-based processed expression values per cell population in Homo sapiens (tsv.gz)
scRNA-Seq droplet-based H5AD data per cell in Homo sapiens (h5ad)
Homo sapiens
Homo sapiens
Stromal cell of endometrium
+6
Stromal cell of endometrium
Endometrium
Endometrium
Young adult stage
Young adult stage
Normal
Normal
Female
Female
10x genomics v3
10x genomics v3
Organism
Homo sapiens
Cell type
Stromal cell of endometrium
Uterine smooth muscle cell
Endothelial cell of uterus
Lymphocyte
Macrophage
Epithelial cell of uterus
Ciliated epithelial cell
Tissue
Endometrium
Developmental stage
Young adult stage
Disease
Normal
Sex
Female
Technology
10x genomics v3
Suspension type
Related Links
SRA Project:SRP135922
CELLxGENE
70,963 cells
•
Techameena et al., 2024
The single-cell transcriptomic atlas iPain identifies senescence of nociceptors as a therapeutical target for chronic pain treatment
Explore
h5ad
Mus musculus
Mus musculus
Sensory neuron of dorsal root ganglion
Sensory neuron of dorsal root ganglion
Dorsal root ganglion
Dorsal root ganglion
15-month-old stage
+1
15-month-old stage
Normal
+1
Normal
Female
+1
Female
10x multiome
+6
10x multiome
Nucleus
+1
Nucleus
Organism
Mus musculus
Cell type
Sensory neuron of dorsal root ganglion
Tissue
Dorsal root ganglion
Developmental stage
15-month-old stage
8-week-old stage
Disease
Normal
Peripheral neuropathy, non-human animal
Sex
Female
Male
Technology
10x multiome
Indrop
Smart-seq3
Smart-seq2
10x 3' transcription profiling
10x 3' v3
10x 3' v2
Suspension type
Nucleus
Cell
Related Links
DOI:10.3389/fnmol.2022.1038539
DOI:10.1371/journal.pone.0185543
DOI:10.1016/j.neuron.2022.03.003
DOI:10.1016/j.neuron.2020.07.026
DOI:10.7554/eLife.68457
DOI:10.7554/eLife.76063
DOI:10.1016/j.celrep.2021.109914
DOI:10.1038/s41586-019-1900-1
DOI:10.3389/fncel.2022.885569
DOI:10.1038/s41422-021-00479-9
CELLxGENE
70,963 cells
•
Techameena et al., 2024
The single-cell transcriptomic atlas iPain identifies senescence of nociceptors as a therapeutical target for chronic pain treatment
Explore
h5ad
Mus musculus
Mus musculus
Sensory neuron of dorsal root ganglion
Sensory neuron of dorsal root ganglion
Dorsal root ganglion
Dorsal root ganglion
15-month-old stage
+1
15-month-old stage
Normal
+1
Normal
Female
+1
Female
10x multiome
+6
10x multiome
Nucleus
+1
Nucleus
Organism
Mus musculus
Cell type
Sensory neuron of dorsal root ganglion
Tissue
Dorsal root ganglion
Developmental stage
15-month-old stage
8-week-old stage
Disease
Normal
Peripheral neuropathy, non-human animal
Sex
Female
Male
Technology
10x multiome
Indrop
Smart-seq3
Smart-seq2
10x 3' transcription profiling
10x 3' v3
10x 3' v2
Suspension type
Nucleus
Cell
Related Links
DOI:10.3389/fnmol.2022.1038539
DOI:10.3389/fncel.2022.885569
DOI:10.1016/j.neuron.2022.03.003
DOI:10.1016/j.neuron.2020.07.026
DOI:10.1038/s41422-021-00479-9
DOI:10.7554/eLife.68457
DOI:10.1016/j.celrep.2021.109914
DOI:10.1038/s41586-019-1900-1
DOI:10.1371/journal.pone.0185543
DOI:10.7554/eLife.76063
CELLxGENE
70,963 cells
•
Techameena et al., 2024
The single-cell transcriptomic atlas iPain identifies senescence of nociceptors as a therapeutical target for chronic pain treatment
Explore
h5ad
Mus musculus
Mus musculus
Sensory neuron of dorsal root ganglion
Sensory neuron of dorsal root ganglion
Dorsal root ganglion
Dorsal root ganglion
15-month-old stage
+1
15-month-old stage
Normal
+1
Normal
Female
+1
Female
10x multiome
+6
10x multiome
Nucleus
+1
Nucleus
Organism
Mus musculus
Cell type
Sensory neuron of dorsal root ganglion
Tissue
Dorsal root ganglion
Developmental stage
15-month-old stage
8-week-old stage
Disease
Normal
Peripheral neuropathy, non-human animal
Sex
Female
Male
Technology
10x multiome
Indrop
Smart-seq3
Smart-seq2
10x 3' transcription profiling
10x 3' v3
10x 3' v2
Suspension type
Nucleus
Cell
Related Links
DOI:10.3389/fnmol.2022.1038539
DOI:10.1371/journal.pone.0185543
DOI:10.1016/j.neuron.2022.03.003
DOI:10.1016/j.neuron.2020.07.026
DOI:10.7554/eLife.68457
DOI:10.7554/eLife.76063
DOI:10.1016/j.celrep.2021.109914
DOI:10.1038/s41586-019-1900-1
DOI:10.3389/fncel.2022.885569
DOI:10.1038/s41422-021-00479-9
CELLxGENE
70,803 cells
•
Mannens et al., 2024
Chromatin accessibility during human first-trimester neurodevelopment
Explore
h5ad
Homo sapiens
Homo sapiens
Glioblast
+2
Glioblast
Medulla oblongata
+7
Medulla oblongata
13th week post-fertilization stage
+4
13th week post-fertilization stage
Normal
Normal
Female
+1
Female
10x multiome
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Glioblast
Oligodendrocyte precursor cell
Radial glial cell
Tissue
Medulla oblongata
Hindbrain
Telencephalon
Midbrain
Cerebellum
Brain
Diencephalon
Pons
Developmental stage
13th week post-fertilization stage
12th week post-fertilization stage
9th week post-fertilization stage
10th week post-fertilization stage
Embryonic stage
Disease
Normal
Sex
Female
Male
Technology
10x multiome
Suspension type
Nucleus
Related Links
EGA Study:EGAS00001007472
Github:linnarsson-lab/fetal_brain_multiomics
CELLxGENE
70,547 cells
•
Emont et al., 2022
A single-cell atlas of human and mouse white adipose tissue
Explore
h5ad
Mus musculus
Mus musculus
T cell
+7
T cell
Periovarian fat pad
+2
Periovarian fat pad
19-week-old stage
19-week-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Mus musculus
Cell type
T cell
Neutrophil
Mature nk t cell
Mast cell
Macrophage
B cell
Monocyte
Dendritic cell
Tissue
Periovarian fat pad
Inguinal fat pad
Epididymal fat pad
Developmental stage
19-week-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
BroadInstitute Single-Cell Portal:SCP1376
gitlab.com
GEO series:GSE176067
GEO series:GSE176171
dbGaP Study:phs002766
CELLxGENE
70,495 cells
•
He et al., 2022
A human fetal lung cell atlas uncovers proximal-distal gradients of differentiation and key regulators of epithelial fates
Explore
h5ad
Homo sapiens
Homo sapiens
Club cell
+8
Club cell
Lung
Lung
Carnegie stage 19
+7
Carnegie stage 19
Normal
Normal
Female
+1
Female
10x 5' v1
10x 5' v1
Cell
Cell
Organism
Homo sapiens
Cell type
Club cell
Lung secretory cell
Neuroendocrine cell
Pulmonary neuroendocrine cell
Basal cell
Respiratory tract epithelial cell
Pulmonary alveolar type 1 cell
Epithelial cell of lung
Pulmonary alveolar type 2 cell
Tissue
Lung
Developmental stage
Carnegie stage 19
15th week post-fertilization stage
20th week post-fertilization stage
9th week post-fertilization stage
18th week post-fertilization stage
22nd week post-fertilization stage
Carnegie stage 16
11th week post-fertilization stage
Disease
Normal
Sex
Female
Male
Technology
10x 5' v1
Suspension type
Cell
Related Links
ArrayExpress BioStudies:E-MTAB-11278
ArrayExpress BioStudies:E-MTAB-11267
ArrayExpress BioStudies:E-MTAB-11265
ArrayExpress BioStudies:E-MTAB-11266
Sanger Dataset:fetal-lung
genome.ucsc.edu
Github:Peng-He-Lab/Human_fetal_lung_cell_atlas_2022
CELLxGENE
70,448 cells
•
The Tabula Sapiens Consortium* et al., 2022
The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+25
T cell
Spleen
Spleen
69-year-old stage
+5
69-year-old stage
Normal
Normal
Female
+1
Female
10x 5' v2
+2
10x 5' v2
Cell
Cell
Organism
Homo sapiens
Cell type
T cell
Neutrophil
Natural killer cell
Erythrocyte
Endothelial cell
Mature nk t cell
Hematopoietic precursor cell
Cd8-positive, alpha-beta t cell
Platelet
Classical monocyte
Intermediate monocyte
Plasmacytoid dendritic cell
Myeloid dendritic cell
Naive thymus-derived cd8-positive, alpha-beta t cell
Macrophage
Innate lymphoid cell
Regulatory t cell
Hematopoietic stem cell
Plasma cell
Cd4-positive, alpha-beta t cell
B cell
Naive thymus-derived cd4-positive, alpha-beta t cell
Monocyte
Basophil
Fibroblast
Non-classical monocyte
Tissue
Spleen
Developmental stage
69-year-old stage
61-year-old stage
56-year-old stage
59-year-old stage
45-year-old stage
60-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 5' v2
Smart-seq2
10x 3' v3
Suspension type
Cell
Related Links
AWS Open Data:tabula-sapiens
CZ BioHub Portal:tabula-sapiens-portal
HumanCellAtlas:10201832-7c73-4033-9b65-3ef13d81656a
UCSC Cell Browser:tabula-sapiens
DOI:10.1101/2024.12.03.626516
UCSC Genome Browser:hgTrackUi?hgsid=1437536541_FfasmBrAlAiA7oFphu1csVv0KHgc&db=hg38&c=chrX&g=tabulaSapiens
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