Macaca fascicularis

Pulmonary alveolar type 1 cell Pulmonary alveolar type 2 cell Macrophage Mast cell Neutrophil Thymic conventional dendritic cell Fibroblast Endothelial cell B cell Plasmacytoid dendritic cell, human Plasma cell Erythrocyte T cell

Tuberculosis

Seq-well

Homo sapiens

Neuron

Middle temporal gyrus Putamen Brodmann (1909) area 24 Posterior parahippocampal gyrus Anterior olfactory nucleus Brodmann (1909) area 38 Pretectal region Subicular complex Gray matter of midbrain Hypothalamus Dentate gyrus of hippocampal formation Bed nucleus of stria terminalis Median tuberal portion Primary somatosensory cortex Medial geniculate body Preoptic area Substantia innominata Perirhinal cortex Lateral nuclear group of thalamus Brodmann (1909) area 35 Substantia nigra Central amygdaloid nucleus Rostral ca3 Agranular insular cortex Globus pallidus Basolateral amygdaloid nuclear complex Parabrachial nucleus Ventral anterior nucleus of thalamus Anterior cortical amygdaloid nucleus Anterior nuclear group Brodmann (1909) area 43 Primary auditory cortex Medial entorhinal cortex Corticomedial nuclear complex Supraoptic nucleus Uncal ca1 Lateral entorhinal cortex Brodmann (1909) area 25 Primary motor cortex Pontine tegmentum Hippocampal field Piriform cortex Lateral amygdaloid nucleus Brodmann (1909) area 40 Claustrum of brain Midbrain tectum Mammillary body Medial dorsal nucleus of thalamus Nucleus accumbens Accessory basal amygdaloid nucleus Superior temporal gyrus Septal nuclear complex

50-year-old stage 60-year-old stage 42-year-old stage 29-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Innate lymphoid cell Stromal cell Mast cell Dendritic cell, human Group 3 innate lymphoid cell, human Endothelial cell B cell Plasma cell T cell Plasmacytoid dendritic cell Natural killer cell Cd34-negative, cd117-positive innate lymphoid cell, human Mononuclear phagocyte

Cystic lymph node

45-year-old stage 40-year-old stage 59-year-old stage 54-year-old stage 61-year-old stage 49-year-old stage

Normal

Female Male

10x 3' v3

Cell

Homo sapiens

Cerebral cortex endothelial cell Vascular leptomeningeal cell Oligodendrocyte precursor cell Oligodendrocyte Astrocyte of the cerebral cortex Microglial cell

Middle temporal gyrus Primary somatosensory cortex Anterior cingulate cortex Primary auditory cortex Dorsolateral prefrontal cortex Primary motor cortex Primary visual cortex Angular gyrus

50-year-old stage 60-year-old stage 42-year-old stage 43-year-old stage 29-year-old stage Sixth decade stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Retinal rod cell Retinal cone cell Microglial cell Retinal progenitor cell Mueller cell Amacrine cell Retinal ganglion cell Retinal astrocyte Retina horizontal cell

Central retina Peripheral region of retina Retina

9th week post-fertilization stage 27th week post-fertilization stage 13th week post-fertilization stage 12th week post-fertilization stage Prenatal stage 11th week post-fertilization stage 19th week post-fertilization stage 20th week post-fertilization stage 17th week post-fertilization stage 15th week post-fertilization stage 22nd week post-fertilization stage 14th week post-fertilization stage 16th week post-fertilization stage 24th week post-fertilization stage 18th week post-fertilization stage

Normal

Female Male

10x 3' v3 10x 3' v1 10x 3' v2

Cell

Homo sapiens

Naive b cell Classical monocyte Cd4-positive, alpha-beta t cell Non-classical monocyte Naive thymus-derived cd4-positive, alpha-beta t cell Effector memory cd4-positive, alpha-beta t cell Myeloid dendritic cell Plasmablast Cd8-positive, alpha-beta memory t cell Naive thymus-derived cd8-positive, alpha-beta t cell Central memory cd4-positive, alpha-beta t cell Memory b cell Effector memory cd8-positive, alpha-beta t cell, terminally differentiated Natural killer cell Gamma-delta t cell

Blood

Young adult stage 60-79 year-old stage Middle aged stage Adult stage

Normal Rheumatoid arthritis

Female Male

10x 3' v3

Cell

Homo sapiens

Pulmonary alveolar type 1 cell Stromal cell Neutrophil Monocyte Pulmonary artery endothelial cell Lung multiciliated epithelial cell Vein endothelial cell B cell Lung macrophage Pulmonary capillary endothelial cell T cell Natural killer cell

Upper lobe of left lung Lower lobe of right lung Lingula of left lung Middle lobe of right lung Upper lobe of right lung

66-year-old stage 19-year-old stage 64-year-old stage 65-year-old stage 37-year-old stage 71-year-old stage 28-year-old stage 36-year-old stage 51-year-old stage 43-year-old stage 55-year-old stage

Normal

Female Male

10x 3' v3

Cell

Mus musculus

Primitive erythroid progenitor

Embryo

Theiler stage 23 Theiler stage 24 Theiler stage 21 Theiler stage 13 Theiler stage 17 Theiler stage 16 Theiler stage 26 Theiler stage 12 Theiler stage 18 Theiler stage 20 Theiler stage 19 Theiler stage 27 Theiler stage 14 Theiler stage 15 Theiler stage 22

Normal

Female Male

Sci-rna-seq3

Nucleus

Homo sapiens

Skin fibroblast

Skin of pes Lower leg skin Skin of cheek Skin of abdomen Hindlimb skin Skin of forearm Skin of shoulder Skin of chest Skin of face Skin of trunk Skin of body Skin of back Skin of leg Skin of hip Inguinal region skin

66-year-old stage 79-year-old stage 18-year-old stage 32-year-old stage 57-year-old stage 62-year-old stage 46-year-old stage 52-year-old stage 22-year-old stage 44-year-old stage 48-year-old stage 64-year-old stage 25-year-old stage 74-year-old stage 33-year-old stage 65-year-old stage 67-year-old stage 75-year-old stage 27-year-old stage 23-year-old stage 37-year-old stage 28-year-old stage 36-year-old stage 63-year-old stage 59-year-old stage 54-year-old stage 47-year-old stage 31-year-old stage 56-year-old stage 58-year-old stage 68-year-old stage 34-year-old stage 51-year-old stage 49-year-old stage 42-year-old stage 35-year-old stage 53-year-old stage 73-year-old stage 30-year-old stage 24-year-old stage 26-year-old stage 39-year-old stage 43-year-old stage 29-year-old stage 38-year-old stage 41-year-old stage 55-year-old stage

Normal Keloid Injury Localized scleroderma

Female Male

10x 5' v1 10x 3' v3 10x 3' v1 Seq-well s3 Mars-seq 10x 3' v2

Cell

Mus musculus

L2/3 intratelencephalic projecting glutamatergic neuron L6 intratelencephalic projecting glutamatergic neuron Vascular leptomeningeal cell Astrocyte Oligodendrocyte precursor cell Oligodendrocyte Sncg gabaergic interneuron L6 corticothalamic-projecting glutamatergic cortical neuron L4/5 intratelencephalic projecting glutamatergic neuron Sst gabaergic interneuron L5/6 near-projecting glutamatergic neuron L5 intratelencephalic projecting glutamatergic neuron Microglial cell Lamp5 gabaergic interneuron L6b glutamatergic cortical neuron Pericyte Endothelial cell Perivascular macrophage L5 extratelencephalic projecting glutamatergic cortical neuron Vip gabaergic interneuron Pvalb gabaergic interneuron

Cerebral cortex

Prime adult stage

Normal

Male

10x 3' v3

Nucleus

Homo sapiens

Basal cell Epithelial cell Glandular cell of esophagus Cycling basal cell Keratinocyte

Epithelium of esophagus Esophagus

Fourth decade stage 17th week post-fertilization stage Fifth decade stage 31-year-old stage 15th week post-fertilization stage Seventh decade stage Sixth decade stage

Normal

Female Male

10x 5' transcription profiling 10x 3' v2

Cell

Homo sapiens

Myofibroblast cell Transit amplifying cell Capillary endothelial cell Mural cell Igg plasma cell Innate lymphoid cell Endothelial cell of lymphatic vessel Glial cell Iga plasma cell Macrophage Epithelial fate stem cell Mast cell Epithelial cell Paneth cell Monocyte Enteroendocrine cell Vein endothelial cell Fibroblast Endothelial cell Follicular dendritic cell B cell Dendritic cell T cell Plasmacytoid dendritic cell Secretory cell Igm plasma cell Natural killer cell Endothelial cell of artery M cell of gut Germinal center b cell Myeloid cell Goblet cell

Crohn's colitis

10x 3' v2