Homo sapiens

Neuron

Middle temporal gyrus Cerebellar vermis Posterior parahippocampal gyrus Brodmann (1909) area 38 Pretectal region Gray matter of midbrain Brodmann (1909) area 19 Hypothalamus Cerebrocerebellum Dentate gyrus of hippocampal formation Lateral geniculate body Bed nucleus of stria terminalis Medial geniculate body Substantia innominata Body of caudate nucleus Lateral nuclear group of thalamus Dorsal tegmental nucleus Epithalamus Substantia nigra Central amygdaloid nucleus Globus pallidus Basolateral amygdaloid nuclear complex Parabrachial nucleus Anterior nuclear group Medial entorhinal cortex Red nucleus Corticomedial nuclear complex Lateral posterior nucleus of thalamus Nucleus of medulla oblongata Cerebellar nuclear complex Temporal fusiform gyrus Lateral entorhinal cortex Midbrain nucleus Primary motor cortex Pulvinar nucleus Pontine tegmentum Spinal cord Hippocampal field Inferior olivary complex Midbrain tectum Mammillary body Pontine reticular formation Pontine nuclear group Medial dorsal nucleus of thalamus Retrosplenial region Medial zone of hypothalamus Intralaminar nuclear group Septal nuclear complex

50-year-old stage 60-year-old stage 42-year-old stage 29-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Cd4-positive, alpha-beta t cell Naive thymus-derived cd4-positive, alpha-beta t cell Effector cd8-positive, alpha-beta t cell Malignant cell Naive thymus-derived cd8-positive, alpha-beta t cell Follicular dendritic cell B cell Cd8-positive, alpha-beta t cell Cd4-positive, alpha-beta cytotoxic t cell Plasma cell Erythrocyte Regulatory t cell Mature nk t cell T cell Plasmacytoid dendritic cell T follicular helper cell Exhausted t cell Myeloid cell

Lymph node

Normal Follicular lymphoma

10x 5' v1

Cell

Macaca mulatta

Astrocyte

Cerebellar vermis Entorhinal cortex Brodmann (1909) area 19 Inferior temporal gyrus Hippocampal formation Cerebrocerebellum Lateral geniculate body Primary somatosensory cortex Perirhinal cortex Corpus callosum Anterior cingulate cortex Primary auditory cortex Dorsolateral prefrontal cortex Pons Primary motor cortex Superior temporal sulcus Midbrain Amygdala Primary visual cortex Superior parietal cortex Medulla oblongata Inferior parietal cortex Ventral lateral nucleus of thalamus Medial dorsal nucleus of thalamus Nucleus accumbens Head of caudate nucleus Prefrontal cortex

Prime adult stage Juvenile stage

Normal

Female Male

Sci-rna-seq3

Nucleus

Homo sapiens

Astrocyte Oligodendrocyte precursor cell Oligodendrocyte Lymphocyte Macrophage Neoplastic cell Monocyte Microglial cell Vascular associated smooth muscle cell Fibroblast Pericyte Endothelial cell B cell

Right temporal lobe

73-year-old stage

Glioblastoma

Male

10x 3' v3

Cell

Homo sapiens

L2/3-6 intratelencephalic projecting glutamatergic neuron Caudal ganglionic eminence derived interneuron Cerebral cortex endothelial cell Vascular leptomeningeal cell Oligodendrocyte precursor cell Oligodendrocyte Astrocyte of the cerebral cortex Sncg gabaergic interneuron Near-projecting glutamatergic cortical neuron Sst gabaergic interneuron Microglial cell Lamp5 gabaergic interneuron L6b glutamatergic cortical neuron Corticothalamic-projecting glutamatergic cortical neuron L5 extratelencephalic projecting glutamatergic cortical neuron Vip gabaergic interneuron Pvalb gabaergic interneuron Pvalb chandelier gabaergic interneuron

Anterior cingulate cortex

50-year-old stage 60-year-old stage 42-year-old stage 43-year-old stage 29-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Pro-b cell Common myeloid progenitor Kupffer cell Multi fate stem cell Innate lymphoid cell Macrophage Granulocyte monocyte progenitor cell Mast cell Megakaryocyte-erythroid progenitor cell Erythroid lineage cell Fraction a pre-pro b cell Stem cell Monocyte Megakaryocyte Neutrophilic myeloblast Common lymphoid progenitor Conventional dendritic cell Fibroblast Hepatocyte Endothelial cell B cell Pro-t cell Plasmacytoid dendritic cell Common dendritic progenitor Precursor b cell Natural killer cell Hematopoietic multipotent progenitor cell Mononuclear phagocyte

Metanephros Liver Zone of skin Yolk sac

9th week post-fertilization stage Carnegie stage 14 13th week post-fertilization stage 12th week post-fertilization stage 10th week post-fertilization stage Carnegie stage 22 11th week post-fertilization stage 17th week post-fertilization stage 15th week post-fertilization stage 14th week post-fertilization stage 18th week post-fertilization stage Carnegie stage 23

Normal

Female Male

10x genomics v2

Homo sapiens

Macrophage Naive thymus-derived cd4-positive, alpha-beta t cell Mast cell Monocyte Conventional dendritic cell B cell Cd8-positive, alpha-beta t cell Cycling t cell Cd4-positive, cd25-positive, alpha-beta regulatory t cell Plasmacytoid dendritic cell, human Plasma cell T follicular helper cell Natural killer cell Myeloid cell

Oropharynx Mouth floor Gingiva of lower jaw Mandible Tongue Hypopharynx Larynx Oral cavity Alveolar ridge of mandible Buccal mucosa

80-year-old stage 66-year-old stage 70-year-old stage 18-year-old stage 77-year-old stage 32-year-old stage 50-year-old stage 57-year-old stage 62-year-old stage 60-year-old stage 48-year-old stage 64-year-old stage 45-year-old stage 74-year-old stage 65-year-old stage 67-year-old stage 75-year-old stage 54-year-old stage 56-year-old stage 58-year-old stage 61-year-old stage 51-year-old stage 35-year-old stage 53-year-old stage 72-year-old stage 73-year-old stage 69-year-old stage 43-year-old stage 55-year-old stage

Head and neck squamous cell carcinoma

Female Male

10x 3' v3 10x 5' transcription profiling 10x 3' v2

Cell

Homo sapiens

Classical monocyte Cd4-positive, alpha-beta t cell Pulmonary alveolar type 2 cell Club cell Platelet Non-classical monocyte Leukocyte Mesothelial cell Lung goblet cell Stromal cell Mast cell Lung endothelial cell Basal cell Neutrophil Lung multiciliated epithelial cell B cell Cd8-positive, alpha-beta t cell Lung macrophage Lung pericyte Plasma cell Pulmonary capillary endothelial cell Erythrocyte Regulatory t cell Mature nk t cell Fibroblast of lung Smooth muscle cell Natural killer cell Gamma-delta t cell

Upper lobe of left lung

36-year-old stage

Covid-19

Male

10x 3' v3

Cell

Homo sapiens

Germ cell Mural cell Supporting cell Mesothelial cell Epithelial cell Hematopoietic cell Leydig cell Sertoli cell Endothelial cell Mesenchymal cell Erythrocyte Neural cell

Gonad

9th week post-fertilization stage 12th week post-fertilization stage 11th week post-fertilization stage 21st week post-fertilization stage 19th week post-fertilization stage 17th week post-fertilization stage 15th week post-fertilization stage Carnegie stage 19 14th week post-fertilization stage 16th week post-fertilization stage Carnegie stage 17

Normal

Male

10x 5' v2 10x 5' v1

Cell

Homo sapiens

Cd4-positive, alpha-beta t cell Effector cd8-positive, alpha-beta t cell Cd4-positive, alpha-beta memory t cell, cd45ro-positive Naive thymus-derived cd8-positive, alpha-beta t cell Effector memory cd8-positive, alpha-beta t cell T-helper 17 cell Cd8-positive, alpha-beta t cell Activated cd4-positive, alpha-beta t cell Regulatory t cell Exhausted t cell Myeloid cell

T cell

66-year-old stage 70-year-old stage 57-year-old stage 52-year-old stage 60-year-old stage 44-year-old stage 48-year-old stage 64-year-old stage 74-year-old stage 28-year-old stage 63-year-old stage 59-year-old stage 54-year-old stage 58-year-old stage 68-year-old stage 61-year-old stage 42-year-old stage 24-year-old stage 38-year-old stage

B-cell non-hodgkin lymphoma

Female Male

10x 5' v1

Cell

Homo sapiens

Glioblast

Upper layers of the cortex Dorsal plus ventral thalamus Entorhinal cortex Cerebral subcortex Caudate-putamen Hippocampal formation Hypothalamus Diencephalon Forebrain Cerebellum Telencephalon Cerebellar peduncular complex Frontal cortex Brain Striatum Pons Midbrain Lower layers of the cortex Medulla oblongata Hindbrain Cortex Midbrain tectum Basal forebrain Occipital cortex Metencephalon

9th week post-fertilization stage 13th week post-fertilization stage 12th week post-fertilization stage 10th week post-fertilization stage Carnegie stage 22 11th week post-fertilization stage 15th week post-fertilization stage 14th week post-fertilization stage Carnegie stage 15 Carnegie stage 20 Carnegie stage 18 Carnegie stage 16

Normal

10x 3' v3 10x 3' v2

Cell

Heterocephalus glaber Mus musculus

Type i nk t cell Marginal zone b cell of spleen Cd4-positive, alpha-beta memory t cell Naive thymus-derived cd4-positive, alpha-beta t cell Mast cell Splenic macrophage Blood cell Splenic red pulp macrophage Erythroid lineage cell Naive t cell Neutrophil Monocyte Cd8-alpha-positive cd11b-negative dendritic cell Granulocyte Cd8-positive, alpha-beta memory t cell Obsolete animal cell Naive thymus-derived cd8-positive, alpha-beta t cell B cell Cd8-positive, alpha-beta t cell Dendritic cell Plasma cell Erythrocyte T cell Memory b cell Plasmacytoid dendritic cell Natural killer cell

Blood Spleen

Post-juvenile adult stage 2-month-old stage

Normal

Female Male

10x genomics v2 Illumina