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Disease
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Technology
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Cell
890
Nucleus
655
Data Source
0
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Asap
43
Bgee
40
Cellxgene
2,066
Single cell portal
179
Sort
Most cells
Fewest cells
2328
datasets
CELLxGENE
126,743 cells
•
Qiu et al., 2024
A single-cell time-lapse of mouse prenatal development from gastrula to birth
Explore
h5ad
Mus musculus
Mus musculus
Myelinating schwann cell
+4
Myelinating schwann cell
Embryo
Embryo
Theiler stage 23
+15
Theiler stage 23
Normal
Normal
Female
+1
Female
Sci-rna-seq3
Sci-rna-seq3
Nucleus
Nucleus
Organism
Mus musculus
Cell type
Myelinating schwann cell
Perineuronal satellite cell
Olfactory ensheathing cell
Schwann cell precursor
Melanocyte
Tissue
Embryo
Developmental stage
Theiler stage 23
Theiler stage 24
Theiler stage 21
Theiler stage 13
Theiler stage 25
Theiler stage 17
Theiler stage 16
Theiler stage 26
Theiler stage 12
Theiler stage 18
Theiler stage 20
Theiler stage 19
Theiler stage 27
Theiler stage 14
Theiler stage 15
Theiler stage 22
Disease
Normal
Sex
Female
Male
Technology
Sci-rna-seq3
Suspension type
Nucleus
Related Links
GEO series:GSE228590
Ontogeny of Mouse, Graphed
GEO series:GSE186069
Single Cell Portal
126,507 cells
Explore
Homo sapiens
Homo sapiens
Oligodendrocyte
+5
Oligodendrocyte
Glioblastoma
+2
Glioblastoma
Single-cell rna sequencing
Single-cell rna sequencing
Organism
Homo sapiens
Cell type
Oligodendrocyte
Lymphocyte
Neoplastic cell
Pericyte
Endothelial cell
Myeloid cell
Tissue
Developmental stage
Disease
Glioblastoma
Diffuse glioma, h3 g34 mutant
Oligodendroglioma, idh-mutant and 1p/19q-codeleted, grade 3
Sex
Technology
Single-cell rna sequencing
Suspension type
Single Cell Portal
126,343 cells
Explore
Macaca fascicularis
Macaca fascicularis
Endothelial stalk cell
+8
Endothelial stalk cell
Normal
Normal
10x 3' v3
10x 3' v3
Organism
Macaca fascicularis
Cell type
Endothelial stalk cell
Astrocyte
Oligodendrocyte precursor cell
Oligodendrocyte
Interneuron
Microglial cell
Fibroblast
Ependymal cell
Neuron
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v3
Suspension type
Related Links
Github:ericminikel/nhp_deepbrain_aso
CELLxGENE
125,955 cells
•
Zhang et al., 2023
A human embryonic limb cell atlas resolved in space and time
Explore
h5ad
Homo sapiens
Homo sapiens
Osteoblast
+37
Osteoblast
Hindlimb
+1
Hindlimb
9th week post-fertilization stage
+7
9th week post-fertilization stage
Normal
Normal
Female
+1
Female
10x 5' v1
+1
10x 5' v1
Cell
Cell
Organism
Homo sapiens
Cell type
Osteoblast
Skeletal muscle myoblast
Common myeloid progenitor
Schwann cell
Peridermal cell
Endothelial cell of lymphatic vessel
Muscle cell
Macrophage
Articular chondrocyte
Mast cell
Basal cell
Monocyte
Tendon cell
Megakaryocyte
Myoblast
Schwann cell precursor
Reticulocyte
Vein endothelial cell
Primitive red blood cell
Early lymphoid progenitor
Conventional dendritic cell
Fibroblast
Pericyte
Mesenchymal cell
B cell
Connective tissue cell
Erythrocyte
Fibroblast of dermis
Myelocyte
Hypertrophic chondrocyte
Muscle fibroblast
Chondroblast
Smooth muscle cell
Neuron
Natural killer cell
Chondrocyte
Endothelial cell of artery
Melanocyte
Tissue
Hindlimb
Forelimb
Developmental stage
9th week post-fertilization stage
10th week post-fertilization stage
Carnegie stage 19
Carnegie stage 23
Carnegie stage 15
Carnegie stage 17
Carnegie stage 18
Carnegie stage 16
Disease
Normal
Sex
Female
Male
Technology
10x 5' v1
10x 3' v2
Suspension type
Cell
Related Links
Human Cell Atlas Developmental:embryonic-limb
ArrayExpress BioStudies:E-MTAB-10367
ArrayExpress BioStudies:E-MTAB-8813
Github:Peng-He-Lab/limbcellatlas
ArrayExpress BioStudies:E-MTAB-10514
CELLxGENE
125,530 cells
•
Wu et al., 2024
Interstitial macrophages are a focus of viral takeover and inflammation in COVID-19 initiation in human lung
Explore
h5ad
Homo sapiens
Homo sapiens
Pulmonary alveolar type 1 cell
+30
Pulmonary alveolar type 1 cell
Lower lobe of left lung
Lower lobe of left lung
57-year-old stage
57-year-old stage
Covid-19
Covid-19
Male
Male
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Pulmonary alveolar type 1 cell
Cd4-positive, alpha-beta t cell
Pulmonary alveolar type 2 cell
Club cell
Non-classical monocyte
Pancreatic acinar cell
Mesothelial cell
Stromal cell
Mast cell
Lung endothelial cell
Basal cell
Epithelial cell of lung
Neutrophil
Myeloid dendritic cell, human
Lung multiciliated epithelial cell
Dendritic cell, human
Intermediate monocyte
B cell
Cd8-positive, alpha-beta t cell
Lung macrophage
Lung pericyte
Plasmacytoid dendritic cell, human
Plasma cell
Pulmonary capillary endothelial cell
Erythrocyte
Regulatory t cell
Mature nk t cell
Fibroblast of lung
Smooth muscle cell
Natural killer cell
Gamma-delta t cell
Tissue
Lower lobe of left lung
Developmental stage
57-year-old stage
Disease
Covid-19
Sex
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
synapse.org:#!Synapse:syn53694312
ncbi.nlm.nih.gov
CELLxGENE
125,289 cells
•
Litviňuková et al., 2020
Cells of the adult human heart
Explore
h5ad
Homo sapiens
Homo sapiens
Regular ventricular cardiac myocyte
Regular ventricular cardiac myocyte
Interventricular septum
+3
Interventricular septum
Eighth decade stage
+3
Eighth decade stage
Normal
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Regular ventricular cardiac myocyte
Tissue
Interventricular septum
Apex of heart
Heart left ventricle
Heart right ventricle
Developmental stage
Eighth decade stage
Fifth decade stage
Seventh decade stage
Sixth decade stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Nucleus
Related Links
ENA Project:ERP123138
support.10xgenomics.com
HumanCellAtlas:ad98d3cd-26fb-4ee3-99c9-8a2ab085e737
Teichmann lab
Github:cartal/HCA_Heart
heartcellatlas.org
UCSC Cell Browser:heart-cell-atlas
UCSC Genome Browser:hgTrackUi?db=hg38&g=heartCellAtlas&position=default
CELLxGENE
125,117 cells
•
Liu et al., 2021
Time-resolved systems immunology reveals a late juncture linked to fatal COVID-19
Explore
h5ad
Homo sapiens
Homo sapiens
Classical monocyte
+9
Classical monocyte
Blood
Blood
66-year-old stage
+31
66-year-old stage
Normal
+1
Normal
Female
+1
Female
10x 5' v1
10x 5' v1
Cell
Cell
Organism
Homo sapiens
Cell type
Classical monocyte
Platelet
Non-classical monocyte
Cd16-negative, cd56-bright natural killer cell, human
Granulocyte
Conventional dendritic cell
Intermediate monocyte
Plasmacytoid dendritic cell
Natural killer cell
Cd16-positive, cd56-dim natural killer cell, human
Tissue
Blood
Developmental stage
66-year-old stage
79-year-old stage
70-year-old stage
77-year-old stage
32-year-old stage
50-year-old stage
57-year-old stage
76-year-old stage
52-year-old stage
60-year-old stage
45-year-old stage
74-year-old stage
67-year-old stage
40-year-old stage
37-year-old stage
71-year-old stage
78-year-old stage
63-year-old stage
59-year-old stage
54-year-old stage
47-year-old stage
58-year-old stage
61-year-old stage
51-year-old stage
49-year-old stage
35-year-old stage
53-year-old stage
73-year-old stage
30-year-old stage
24-year-old stage
84-year-old stage
55-year-old stage
Disease
Normal
Covid-19
Sex
Female
Male
Technology
10x 5' v1
Suspension type
Cell
Related Links
John Tsang group
Github:niaid/covid19-time-resolved
GEO series:GSE161918
UCSC Cell Browser:covid19-fatal
HumanCellAtlas:ae62bb31-55ca-4127-b0fb-b1771a604645
CELLxGENE
124,917 cells
•
Nascimento et al., 2023
Protracted neuronal recruitment in the temporal lobes of young children
Explore
h5ad
Homo sapiens
Homo sapiens
Inhibitory interneuron
+9
Inhibitory interneuron
Entorhinal cortex
+1
Entorhinal cortex
79-year-old stage
+10
79-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Inhibitory interneuron
Brain vascular cell
Glutamatergic neuron
Astrocyte
Oligodendrocyte precursor cell
Oligodendrocyte
Neural progenitor cell
Microglial cell
Ependymal cell
Cortical interneuron
Tissue
Entorhinal cortex
Ganglionic eminence
Developmental stage
79-year-old stage
50-year-old stage
2-year-old stage
1-month-old stage
27-year-old stage
21st week post-fertilization stage
2-month-old stage
51-year-old stage
13-year-old stage
3-year-old stage
Newborn stage (0-28 days)
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
GEO series:GSE199762
dbGaP Study:phs003509
CELLxGENE
124,440 cells
•
Xu et al., 2023
Automatic cell-type harmonization and integration across Human Cell Atlas datasets
Explore
h5ad
Homo sapiens
Homo sapiens
Naive b cell
+27
Naive b cell
Bronchopulmonary lymph node
+3
Bronchopulmonary lymph node
52-year-old stage
+6
52-year-old stage
Normal
Normal
Female
+1
Female
10x 5' v2
+3
10x 5' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Naive b cell
Classical monocyte
Innate lymphoid cell
Endothelial cell of lymphatic vessel
Non-classical monocyte
Macrophage
Mucosal invariant t cell
Effector memory cd4-positive, alpha-beta t cell
Stromal cell
Mast cell
Cd16-negative, cd56-bright natural killer cell, human
Plasmablast
Dendritic cell, human
Conventional dendritic cell
Central memory cd4-positive, alpha-beta t cell
Effector memory cd8-positive, alpha-beta t cell
Endothelial cell
Central memory cd8-positive, alpha-beta t cell
B cell
Activated cd4-positive, alpha-beta t cell
Plasma cell
Regulatory t cell
T cell
Memory b cell
Plasmacytoid dendritic cell
T follicular helper cell
Cd16-positive, cd56-dim natural killer cell, human
Germinal center b cell
Tissue
Bronchopulmonary lymph node
Mesenteric lymph node
Thoracic lymph node
Lymph node
Developmental stage
52-year-old stage
65-year-old stage
Eighth decade stage
Fifth decade stage
Seventh decade stage
Third decade stage
Sixth decade stage
Disease
Normal
Sex
Female
Male
Technology
10x 5' v2
10x 5' v1
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
ebi.ac.uk
EGA dataset:EGAD00001008575
celltypist.org
Github:ventolab/CVID
teichlab.org
CELLxGENE
124,132 cells
•
De Simone et al., 2024
A comprehensive analysis framework for evaluating commercial single-cell RNA sequencing technologies
Explore
h5ad
Homo sapiens
Homo sapiens
Cd4-positive, alpha-beta t cell
+8
Cd4-positive, alpha-beta t cell
Blood
Blood
42-year-old stage
42-year-old stage
Normal
Normal
Male
Male
10x 5' v2
+8
10x 5' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Cd4-positive, alpha-beta t cell
Cytotoxic t cell
Megakaryocyte
Cd14-positive monocyte
B cell
Dendritic cell
Plasmacytoid dendritic cell
Cd14-low, cd16-positive monocyte
Natural killer cell
Tissue
Blood
Developmental stage
42-year-old stage
Disease
Normal
Sex
Male
Technology
10x 5' v2
10x gene expression flex
10x 3' v3
Hive clx single-cell rnaseq solution
Scalebio single cell rna sequencing
Parse evercode whole transcriptome v2
Particle-templated instant partition sequencing
Bd rhapsody whole transcriptome analysis
Asteria scrna-seq kit
Suspension type
Cell
Related Links
Github:danledinh/scRNAseq-repo
ncbi.nlm.nih.gov
DOI:10.5281/zenodo.13910292
CELLxGENE
123,236 cells
•
Mossi Albiach et al., 2023
Futile wound healing drives mesenchymal-like cell phenotypes in human glioblastoma
Explore
h5ad
Homo sapiens
Homo sapiens
Astrocyte
+12
Astrocyte
Right temporal lobe
Right temporal lobe
63-year-old stage
63-year-old stage
Glioblastoma
Glioblastoma
Male
Male
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Astrocyte
Oligodendrocyte precursor cell
Oligodendrocyte
Lymphocyte
Macrophage
Neoplastic cell
Monocyte
Microglial cell
Vascular associated smooth muscle cell
Fibroblast
Pericyte
Endothelial cell
Myeloid leukocyte
Tissue
Right temporal lobe
Developmental stage
63-year-old stage
Disease
Glioblastoma
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
CELLxGENE
123,161 cells
•
Braun et al., 2023
Comprehensive cell atlas of the first-trimester developing human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Radial glial cell
+5
Radial glial cell
Medulla oblongata
Medulla oblongata
9th week post-fertilization stage
+4
9th week post-fertilization stage
Normal
Normal
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Radial glial cell
Oligodendrocyte
Neuroblast (sensu vertebrata)
Neuroblast (sensu nematoda and protostomia)
Neuron
Glioblast
Tissue
Medulla oblongata
Developmental stage
9th week post-fertilization stage
10th week post-fertilization stage
14th week post-fertilization stage
Carnegie stage 20
Carnegie stage 18
Disease
Normal
Sex
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
EGA dataset:EGAD00001006049
Github:linnarsson-lab/developing-human-brain?tab=readme-ov-file
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