Homo sapiens

Cycling t cell Natural killer cell Mast cell Cd8-positive, alpha-beta t cell Plasmacytoid dendritic cell, human Macrophage Cd4-positive, cd25-positive, alpha-beta regulatory t cell Myeloid cell Plasma cell T follicular helper cell B cell Naive thymus-derived cd4-positive, alpha-beta t cell Monocyte Conventional dendritic cell

Gingiva of lower jaw Hypopharynx Buccal mucosa Alveolar ridge of mandible Larynx Mandible Tongue Oropharynx Oral cavity Mouth floor

66-year-old stage 69-year-old stage 75-year-old stage 65-year-old stage 43-year-old stage 53-year-old stage 61-year-old stage 54-year-old stage 48-year-old stage 56-year-old stage 55-year-old stage 50-year-old stage 80-year-old stage 51-year-old stage 57-year-old stage 72-year-old stage 74-year-old stage 35-year-old stage 58-year-old stage 67-year-old stage 32-year-old stage 77-year-old stage 64-year-old stage 45-year-old stage 62-year-old stage 70-year-old stage 60-year-old stage 18-year-old stage 73-year-old stage

Head and neck squamous cell carcinoma

Female Male

10x 5' transcription profiling 10x 3' v3 10x 3' v2

Cell

Homo sapiens

Neutrophil Club cell Stromal cell Natural killer cell Erythrocyte Pulmonary capillary endothelial cell Gamma-delta t cell Mature nk t cell Mast cell Cd8-positive, alpha-beta t cell Platelet Basal cell Lung goblet cell Leukocyte Classical monocyte Smooth muscle cell Lung multiciliated epithelial cell Lung macrophage Regulatory t cell Lung endothelial cell Fibroblast of lung Plasma cell Cd4-positive, alpha-beta t cell Mesothelial cell B cell Pulmonary alveolar type 2 cell Lung pericyte Non-classical monocyte

Upper lobe of left lung

36-year-old stage

Covid-19

Male

10x 3' v3

Cell

Homo sapiens

Supporting cell Erythrocyte Endothelial cell Sertoli cell Epithelial cell Neural cell Mural cell Mesenchymal cell Mesothelial cell Germ cell Leydig cell Hematopoietic cell

Gonad

Carnegie stage 19 19th week post-fertilization stage 21st week post-fertilization stage 14th week post-fertilization stage 15th week post-fertilization stage 17th week post-fertilization stage 12th week post-fertilization stage 16th week post-fertilization stage 9th week post-fertilization stage Carnegie stage 17 11th week post-fertilization stage

Normal

Male

10x 5' v2 10x 5' v1

Cell

Homo sapiens

Effector cd8-positive, alpha-beta t cell Activated cd4-positive, alpha-beta t cell Cd8-positive, alpha-beta t cell Exhausted t cell Naive thymus-derived cd8-positive, alpha-beta t cell T-helper 17 cell Regulatory t cell Myeloid cell Cd4-positive, alpha-beta t cell Cd4-positive, alpha-beta memory t cell, cd45ro-positive Effector memory cd8-positive, alpha-beta t cell

T cell

66-year-old stage 42-year-old stage 61-year-old stage 52-year-old stage 54-year-old stage 68-year-old stage 48-year-old stage 44-year-old stage 38-year-old stage 28-year-old stage 57-year-old stage 74-year-old stage 24-year-old stage 58-year-old stage 59-year-old stage 64-year-old stage 70-year-old stage 60-year-old stage 63-year-old stage

B-cell non-hodgkin lymphoma

Female Male

10x 5' v1

Cell

Homo sapiens

Glioblast

Striatum Medulla oblongata Hindbrain Telencephalon Cortex Midbrain Dorsal plus ventral thalamus Lower layers of the cortex Frontal cortex Entorhinal cortex Midbrain tectum Metencephalon Basal forebrain Cerebellum Brain Hypothalamus Cerebellar peduncular complex Upper layers of the cortex Caudate-putamen Hippocampal formation Diencephalon Pons Cerebral subcortex Occipital cortex Forebrain

13th week post-fertilization stage 14th week post-fertilization stage 15th week post-fertilization stage 12th week post-fertilization stage Carnegie stage 20 9th week post-fertilization stage 10th week post-fertilization stage Carnegie stage 22 Carnegie stage 16 Carnegie stage 15 Carnegie stage 18 11th week post-fertilization stage

Normal

10x 3' v3 10x 3' v2

Cell

Heterocephalus glaber Mus musculus

T cell Splenic red pulp macrophage Neutrophil Granulocyte Natural killer cell Erythrocyte Mast cell Cd8-positive, alpha-beta t cell Erythroid lineage cell Plasmacytoid dendritic cell Cd8-positive, alpha-beta memory t cell Naive thymus-derived cd8-positive, alpha-beta t cell Obsolete animal cell Splenic macrophage Memory b cell Plasma cell Type i nk t cell Cd4-positive, alpha-beta memory t cell B cell Cd8-alpha-positive cd11b-negative dendritic cell Naive t cell Naive thymus-derived cd4-positive, alpha-beta t cell Monocyte Blood cell Marginal zone b cell of spleen Dendritic cell

Spleen Blood

Post-juvenile adult stage 2-month-old stage

Normal

Female Male

10x genomics v2 Illumina

Mus musculus

Endothelial cell of hepatic sinusoid T cell Neutrophil Periportal region hepatocyte Centrilobular region hepatocyte Liver dendritic cell Hepatic stellate cell Macrophage Hepatic portal fibroblast Cholangiocyte B cell

Normal

10x 3' v3

Homo sapiens

Peg cell Stromal cell Endothelial cell of lymphatic vessel Fallopian tube secretory epithelial cell Perivascular cell Endothelial cell Mast cell Smooth muscle cell Lymphocyte Macrophage Plasma cell Ciliated epithelial cell

Ampulla of fallopian tube Fimbria of fallopian tube

37-year-old stage 65-year-old stage 42-year-old stage 43-year-old stage 61-year-old stage 48-year-old stage 44-year-old stage 55-year-old stage 72-year-old stage 32-year-old stage 62-year-old stage 70-year-old stage 47-year-old stage 40-year-old stage

Normal

Female

10x 3' v3 Drop-seq

Cell

Macaca mulatta

T cell L2/3 intratelencephalic projecting glutamatergic neuron Oligodendrocyte precursor cell Endothelial cell Oligodendrocyte Vascular leptomeningeal cell Erythroid lineage cell Smooth muscle cell Inhibitory interneuron Pvalb chandelier gabaergic interneuron Lamp5 gabaergic interneuron Macrophage L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex Microglial cell Vip gabaergic interneuron Myeloid cell L5 extratelencephalic projecting glutamatergic cortical neuron L6b glutamatergic cortical neuron L6 corticothalamic-projecting glutamatergic cortical neuron Pvalb gabaergic interneuron B cell Pericyte Astrocyte L5/6 near-projecting glutamatergic neuron of the primary motor cortex Sst gabaergic interneuron

Dorsolateral prefrontal cortex

Prime adult stage

Normal

Female Male

10x 3' v3

Nucleus

Mus musculus

Neutrophil Stromal cell Natural killer cell Endothelial cell Mast cell Cd8-positive, alpha-beta t cell Plasmacytoid dendritic cell Macrophage Innate lymphoid cell Plasma cell Cd4-positive, alpha-beta t cell Eosinophil B cell Neuron Monocyte Conventional dendritic cell

Brain meninx Subdural space Coronal suture Brain Dura mater Bone marrow Meningeal dura mater

9-week-old stage 3-month-old stage Theiler stage 25 16-month-old stage 20-month-old stage and over 2-month-old stage Theiler stage 23

Normal

Female Male

10x 5' v1 10x 3' v3 10x 3' v2

Cell

Homo sapiens

Group 3 innate lymphoid cell Cd16-positive, cd56-dim natural killer cell, human Innate lymphoid cell Immature innate lymphoid cell Group 1 innate lymphoid cell Cd16-negative, cd56-bright natural killer cell, human

Lung Inguinal lymph node Jejunal epithelium Epithelial lining fluid Thoracic lymph node Spleen Jejunum lamina propria Blood Bone marrow Mesenteric lymph node

75-year-old stage Sixth decade stage 68-year-old stage 48-year-old stage 56-year-old stage Fifth decade stage Third decade stage 23-year-old stage 25-year-old stage 67-year-old stage 33-year-old stage 64-year-old stage Fourth decade stage 20-year-old stage Eighth decade stage 73-year-old stage 27-year-old stage

Normal

Female Male

10x 5' v2 10x 3' v3

Cell

Homo sapiens

Cardiac muscle cell

Normal

Spatial transcriptomics