Mus musculus

Osteoblast Schwann cell Vomeronasal sensory neuron Ciliated epithelial cell Osteoclast Oligodendrocyte Cd4-positive, alpha-beta t cell Ionocyte Macrophage Granulocyte monocyte progenitor cell Stromal cell Mast cell Basal cell Olfactory receptor cell Epithelial cell Sustentacular cell Neutrophil Monocyte Neural progenitor cell Tuft cell Plasmablast Serous secreting cell Fibroblast Group 3 innate lymphoid cell Hematopoietic stem cell Pericyte Endothelial cell Alpha-beta t cell B cell Cd8-positive, alpha-beta t cell Group 2 innate lymphoid cell Dendritic cell Plasmacytoid dendritic cell Precursor b cell Smooth muscle cell Natural killer cell Chondrocyte Gamma-delta t cell Goblet cell

Normal Influenza

10x 3' v3

Homo sapiens

Cultured cell

A-549

Normal

Sci-plex

Nucleus

Homo sapiens

Fibroblast of cardiac tissue

Interventricular septum Apex of heart Heart left ventricle Heart right ventricle

Fourth decade stage Postnatal stage Eighth decade stage Fifth decade stage Pediatric stage Seventh decade stage Third decade stage Sixth decade stage

Normal Dilated cardiomyopathy Non-compaction cardiomyopathy Arrhythmogenic right ventricular cardiomyopathy

Female Male

10x 3' v3 10x 3' v2

Nucleus

Homo sapiens

Radial glial cell Oligodendrocyte Macrophage Neural crest cell Neuroblast (sensu vertebrata) Cell Neuroblast (sensu nematoda and protostomia) Fibroblast Neuroplacodal cell Erythrocyte Neuron Glioblast

Cerebellum

9th week post-fertilization stage 13th week post-fertilization stage 12th week post-fertilization stage 15th week post-fertilization stage Carnegie stage 20

Normal

10x 3' v3 10x 3' v2

Cell

Callithrix jacchus

Gabaergic neuron

Secondary visual cortex Primary somatosensory cortex Brodmann (1909) area 23 Temporal cortex Primary auditory cortex Dorsolateral prefrontal cortex Temporal lobe Brodmann (1909) area 25 Parietal cortex Primary motor cortex Primary visual cortex Prefrontal cortex

Prime adult stage Late adult stage

Normal

Female Male

10x 3' v3

Nucleus

Mus musculus

Cell

Normal

Mixed sex

10x 3' v2

Mus musculus

Kidney afferent arteriole endothelial cell Kidney connecting tubule epithelial cell Macrophage Kidney cortex tubule cell Kidney distal convoluted tubule epithelial cell Kidney collecting duct principal cell Kidney loop of henle thin descending limb epithelial cell Kidney glomerular epithelial cell Kidney efferent arteriole endothelial cell Neutrophil Macula densa epithelial cell Kidney loop of henle cortical thick ascending limb epithelial cell Renal beta-intercalated cell Epithelial cell of proximal tubule Fibroblast Podocyte Pericyte Endothelial cell Kidney loop of henle epithelial cell B cell Dendritic cell Mesangial cell T cell Vasa recta descending limb cell Kidney loop of henle medullary thick ascending limb epithelial cell Renal alpha-intercalated cell Kidney collecting duct epithelial cell Glomerular endothelial cell Natural killer cell Kidney loop of henle thin ascending limb epithelial cell

Renal medulla Inner medulla of kidney Cortex of kidney Outer medulla of kidney Kidney Renal glomerulus

12-week-old stage Postnatal stage 2-month-old stage Prime adult stage Mature stage 8-week-old stage

Normal

Male

10x 3' v3 Drop-seq 10x 3' v2 Dronc-seq 10x 3' transcription profiling

Nucleus Cell

Homo sapiens

Schwann cell Astrocyte Oligodendrocyte precursor cell Oligodendrocyte Macrophage Myelinating schwann cell Pigmented epithelial cell Microglial cell Vascular associated smooth muscle cell Fibroblast Pericyte Endothelial cell B cell T cell Natural killer cell Melanocyte

Macula lutea Pigmented layer of retina Optic disc Sclera Peripheral region of retina Cranial nerve ii

77-year-old stage 50-year-old stage 76-year-old stage 74-year-old stage 33-year-old stage 65-year-old stage 67-year-old stage 71-year-old stage 47-year-old stage 53-year-old stage 72-year-old stage 30-year-old stage 69-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Schwann cell Astrocyte Oligodendrocyte precursor cell Oligodendrocyte Macrophage Myelinating schwann cell Pigmented epithelial cell Microglial cell Vascular associated smooth muscle cell Fibroblast Pericyte B cell T cell Natural killer cell Melanocyte

Normal

10x 3' v1

Homo sapiens

L2/3-6 intratelencephalic projecting glutamatergic neuron Caudal ganglionic eminence derived interneuron Cerebral cortex endothelial cell Vascular leptomeningeal cell Oligodendrocyte precursor cell Oligodendrocyte Astrocyte of the cerebral cortex Sncg gabaergic interneuron Near-projecting glutamatergic cortical neuron Sst gabaergic interneuron Microglial cell Lamp5 gabaergic interneuron L6b glutamatergic cortical neuron Corticothalamic-projecting glutamatergic cortical neuron L5 extratelencephalic projecting glutamatergic cortical neuron Vip gabaergic interneuron Pvalb gabaergic interneuron Pvalb chandelier gabaergic interneuron

Primary auditory cortex

50-year-old stage 60-year-old stage 42-year-old stage 43-year-old stage 29-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Oligodendrocyte Glioblast

Upper layers of the cortex Dorsal plus ventral thalamus Entorhinal cortex Cerebral subcortex Caudate-putamen Hippocampal formation Hypothalamus Diencephalon Forebrain Cerebellum Telencephalon Cerebellar peduncular complex Frontal cortex Brain Striatum Pons Midbrain Lower layers of the cortex Medulla oblongata Hindbrain Cortex Midbrain tectum Basal forebrain Occipital cortex Metencephalon

9th week post-fertilization stage 13th week post-fertilization stage 12th week post-fertilization stage 10th week post-fertilization stage Carnegie stage 22 11th week post-fertilization stage 15th week post-fertilization stage 14th week post-fertilization stage Carnegie stage 15 Carnegie stage 20 Carnegie stage 18 Carnegie stage 16

Normal

10x 3' v3 10x 3' v2

Cell

Danio rerio

Fast muscle myoblast Slow muscle cell Slow muscle myoblast Fast muscle cell

Fast muscle tissue Pharyngeal arch Multicellular anatomical structure Slow muscle tissue

Pharyngula:high-pec Segmentation:26+ somites Pharyngula:prim-5 Hatching:pec-fin Hatching:long-pec Segmentation:20-25 somites Segmentation:14-19 somites Larval:protruding-mouth Pharyngula:prim-15 Pharyngula:prim-25

Normal

Sci-rna-seq3

Nucleus