Home
Data
Contribute
Stats
Resources
Metadata schema
Tools
Community
About
Contact us
Organism
0
Clear
Cell Type
0
Clear
Tissue
0
Clear
Developmental Stage
0
Clear
Disease
0
Clear
Sex
0
Clear
Technology
0
Clear
Suspension Type
0
Clear
Cell
896
Nucleus
659
Data Source
0
Clear
Asap
43
Bgee
40
Cellxgene
2,080
Single cell portal
183
Sort
Most cells
Fewest cells
2346
datasets
CELLxGENE
147,484 cells
Explore
h5ad
Homo sapiens
Homo sapiens
Blood vessel endothelial cell
+16
Blood vessel endothelial cell
Cornea
+2
Cornea
66-year-old stage
+17
66-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Blood vessel endothelial cell
Conjunctiva goblet cell
Endothelial cell of lymphatic vessel
Conjunctival epithelial cell
Endothelial cell
Schwann cell
Melanocyte
Smooth muscle cell
Epithelial cell
Lymphocyte
Pericyte
Progenitor cell
Myeloid leukocyte
Fibroblast
Myelinating schwann cell
Keratocyte
Corneal endothelial cell
Tissue
Cornea
Sclera
Corneo-scleral junction
Developmental stage
66-year-old stage
69-year-old stage
65-year-old stage
71-year-old stage
30-year-old stage
44-year-old stage
50-year-old stage
57-year-old stage
72-year-old stage
24-year-old stage
58-year-old stage
33-year-old stage
62-year-old stage
70-year-old stage
46-year-old stage
60-year-old stage
47-year-old stage
83-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
celltype.info
CELLxGENE
147,137 cells
•
Chan et al., 2021
Signatures of plasticity, metastasis, and immunosuppression in an atlas of human small cell lung cancer
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+10
T cell
Pleural effusion
+7
Pleural effusion
69-year-old stage
+24
69-year-old stage
Lung adenocarcinoma
+2
Lung adenocarcinoma
Female
+1
Female
10x 3' transcription profiling
+2
10x 3' transcription profiling
Cell
Cell
Organism
Homo sapiens
Cell type
T cell
Neutrophil
Erythrocyte
Endothelial cell
Mast cell
Epithelial cell
Macrophage
Plasma cell
B cell
Fibroblast
Dendritic cell
Tissue
Pleural effusion
Lung
Axilla
Liver
Bone spine
Brain
Adrenal gland
Lymph node
Developmental stage
69-year-old stage
75-year-old stage
65-year-old stage
71-year-old stage
85-year-old stage
68-year-old stage
44-year-old stage
55-year-old stage
84-year-old stage
82-year-old stage
80-year-old stage
57-year-old stage
72-year-old stage
81-year-old stage
74-year-old stage
67-year-old stage
77-year-old stage
64-year-old stage
62-year-old stage
70-year-old stage
78-year-old stage
47-year-old stage
76-year-old stage
79-year-old stage
73-year-old stage
Disease
Lung adenocarcinoma
Normal
Small cell lung carcinoma
Sex
Female
Male
Technology
10x 3' transcription profiling
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
data.humantumoratlas.org
dbGaP Study:phs002371
CELLxGENE
146,752 cells
•
Srivatsan et al., 2020
Massively multiplex chemical transcriptomics at single-cell resolution
Explore
h5ad
Homo sapiens
Homo sapiens
Cultured cell
Cultured cell
K-562
K-562
Normal
Normal
Sci-plex
Sci-plex
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Cultured cell
Tissue
K-562
Developmental stage
Disease
Normal
Sex
Technology
Sci-plex
Suspension type
Nucleus
Related Links
Github:cole-trapnell-lab/sci-plex
GEO series:GSE139944
CELLxGENE
146,583 cells
•
Nowicki-Osuch et al., 2023
Single-Cell RNA Sequencing Unifies Developmental Programs of Esophageal and Gastric Intestinal Metaplasia
Explore
h5ad
Homo sapiens
Homo sapiens
Intestine goblet cell
+29
Intestine goblet cell
Duodenum
+8
Duodenum
66-year-old stage
+26
66-year-old stage
Barrett esophagus
+3
Barrett esophagus
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Intestine goblet cell
Natural killer cell
Erythrocyte
Gamma-delta t cell
Type g enteroendocrine cell
Mast cell
Iga plasma cell
Cd4-positive helper t cell
Stem cell
Natural t-regulatory cell
Endothelial cell of artery
Capillary endothelial cell
Peptic cell
Igg plasma cell
P/d1 enteroendocrine cell
Enteroendocrine cell
Glandular cell of esophagus
Macrophage
Memory b cell
Activated cd8-positive, alpha-beta t cell
Parietal cell
Enterocyte
Vein endothelial cell
Mucous neck cell of gastric gland
Foveolar cell of stomach
Monocyte
Fibroblast
Dendritic cell
Memory t cell
Epithelial cell of esophagus
Tissue
Duodenum
Ileum
Colon
Submucosal esophageal gland
Body of stomach
Cardia of stomach
Rectum
Esophagogastric junction
Lower esophagus
Developmental stage
66-year-old stage
69-year-old stage
34-year-old stage
42-year-old stage
43-year-old stage
53-year-old stage
54-year-old stage
68-year-old stage
48-year-old stage
29-year-old stage
56-year-old stage
55-year-old stage
50-year-old stage
51-year-old stage
57-year-old stage
74-year-old stage
80 year-old and over stage
58-year-old stage
67-year-old stage
77-year-old stage
45-year-old stage
62-year-old stage
41-year-old stage
60-year-old stage
63-year-old stage
83-year-old stage
27-year-old stage
Disease
Barrett esophagus
Normal
Gastric intestinal metaplasia
Gastritis
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
EGA dataset:EGAD00001010074
Github:karolno/BE-GIM_Comparison
Bgee
146,133 cells
•
Ton et al., 2023
An atlas of rabbit development as a model for single-cell comparative genomics
Explore
scRNA-Seq droplet-based processed expression values per cell population in Oryctolagus cuniculus (tsv.gz)
scRNA-Seq droplet-based H5AD data per cell in Oryctolagus cuniculus (h5ad)
Oryctolagus cuniculus
Oryctolagus cuniculus
Mononuclear cytotrophoblast cell
+33
Mononuclear cytotrophoblast cell
Yolk sac
+3
Yolk sac
Embryo stage
Embryo stage
Normal
Normal
Mixed sex
Mixed sex
10x genomics v3
10x genomics v3
Organism
Oryctolagus cuniculus
Cell type
Mononuclear cytotrophoblast cell
Endocardial cell
Cns neuron (sensu vertebrata)
Endothelial cell
Ectodermal cell
Erythroid lineage cell
Trophoblast cell
Paraxial cell
Notochordal cell
Epithelial cell
Neural crest cell
Epithelial cell of thyroid gland
Mesodermal cell
Lateral mesodermal cell
Surface ectodermal cell
Bone marrow hematopoietic cell
Epiblast cell
Extraembryonic cell
Migratory neural crest cell
Fetal cardiomyocyte
Obsolete somatic cell
Neurecto-epithelial cell
Vein endothelial cell
Mesothelial cell of epicardium
Mesenchymal cell
Mesothelial cell
Endodermal cell
Progenitor cell
Neuron
Megakaryocyte-erythroid progenitor cell
Embryonic cell (metazoa)
Syncytiotrophoblast cell
Primordial germ cell
Amniocyte
Tissue
Yolk sac
Embryo
Conceptus
Extraembryonic tissue
Developmental stage
Embryo stage
Disease
Normal
Sex
Mixed sex
Technology
10x genomics v3
Suspension type
Related Links
ebi.ac.uk
CELLxGENE
145,995 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Oligodendrocyte
Oligodendrocyte
Dorsolateral prefrontal cortex
Dorsolateral prefrontal cortex
69-year-old stage
+20
69-year-old stage
Normal
+1
Normal
Female
+1
Female
10x multiome
+1
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Oligodendrocyte
Tissue
Dorsolateral prefrontal cortex
Developmental stage
69-year-old stage
75-year-old stage
42-year-old stage
89-year-old stage
87-year-old stage
85-year-old stage
88-year-old stage
68-year-old stage
29-year-old stage
84-year-old stage
82-year-old stage
50-year-old stage
80-year-old stage
72-year-old stage
81-year-old stage
80 year-old and over stage
77-year-old stage
86-year-old stage
70-year-old stage
78-year-old stage
83-year-old stage
Disease
Normal
Dementia
Sex
Female
Male
Technology
10x multiome
10x 3' v3
Suspension type
Nucleus
Related Links
Alzheimer's Disease Research Center
Adult Changes in Thought Study
Allen Brain Map:seattle-alzheimers-disease
AD knowledge portal:syn26223298
AWS Open Data:allen-sea-ad-atlas
BRaIN-lab
Single Cell Portal
143,330 cells
Explore
Mus musculus
Mus musculus
Osteoblast
+38
Osteoblast
Normal
+1
Normal
10x 3' v3
10x 3' v3
Organism
Mus musculus
Cell type
Osteoblast
Neutrophil
Sustentacular cell
Stromal cell
Natural killer cell
Gamma-delta t cell
Endothelial cell
Oligodendrocyte
Alpha-beta t cell
Mast cell
Cd8-positive, alpha-beta t cell
Group 2 innate lymphoid cell
Serous secreting cell
Basal cell
Schwann cell
Ionocyte
Smooth muscle cell
Epithelial cell
Plasmacytoid dendritic cell
Precursor b cell
Olfactory receptor cell
Group 3 innate lymphoid cell
Goblet cell
Tuft cell
Macrophage
Vomeronasal sensory neuron
Plasmablast
Hematopoietic stem cell
Cd4-positive, alpha-beta t cell
Ciliated epithelial cell
B cell
Pericyte
Granulocyte monocyte progenitor cell
Monocyte
Fibroblast
Osteoclast
Dendritic cell
Neural progenitor cell
Chondrocyte
Tissue
Developmental stage
Disease
Normal
Influenza
Sex
Technology
10x 3' v3
Suspension type
CELLxGENE
143,015 cells
•
Srivatsan et al., 2020
Massively multiplex chemical transcriptomics at single-cell resolution
Explore
h5ad
Homo sapiens
Homo sapiens
Cultured cell
Cultured cell
A-549
A-549
Normal
Normal
Sci-plex
Sci-plex
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Cultured cell
Tissue
A-549
Developmental stage
Disease
Normal
Sex
Technology
Sci-plex
Suspension type
Nucleus
Related Links
Github:cole-trapnell-lab/sci-plex
GEO series:GSE139944
CELLxGENE
142,816 cells
•
Reichart et al., 2022
Pathogenic variants damage cell composition and single cell transcription in cardiomyopathies
Explore
h5ad
Homo sapiens
Homo sapiens
Fibroblast of cardiac tissue
Fibroblast of cardiac tissue
Heart right ventricle
+3
Heart right ventricle
Pediatric stage
+7
Pediatric stage
Arrhythmogenic right ventricular cardiomyopathy
+3
Arrhythmogenic right ventricular cardiomyopathy
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Fibroblast of cardiac tissue
Tissue
Heart right ventricle
Apex of heart
Heart left ventricle
Interventricular septum
Developmental stage
Pediatric stage
Sixth decade stage
Fifth decade stage
Third decade stage
Seventh decade stage
Postnatal stage
Fourth decade stage
Eighth decade stage
Disease
Arrhythmogenic right ventricular cardiomyopathy
Dilated cardiomyopathy
Normal
Non-compaction cardiomyopathy
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Nucleus
Related Links
Github:heiniglab/DCM_heart_cell_atlas
EGA Study:EGAS00001006374
Zenodo record:6962685#.YuyuihxBzKE
CELLxGENE
142,362 cells
•
Braun et al., 2023
Comprehensive cell atlas of the first-trimester developing human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Glioblast
+11
Glioblast
Cerebellum
Cerebellum
13th week post-fertilization stage
+4
13th week post-fertilization stage
Normal
Normal
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Glioblast
Cell
Erythrocyte
Oligodendrocyte
Neuroblast (sensu nematoda and protostomia)
Neuroplacodal cell
Neural crest cell
Macrophage
Neuroblast (sensu vertebrata)
Radial glial cell
Neuron
Fibroblast
Tissue
Cerebellum
Developmental stage
13th week post-fertilization stage
15th week post-fertilization stage
12th week post-fertilization stage
Carnegie stage 20
9th week post-fertilization stage
Disease
Normal
Sex
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
EGA dataset:EGAD00001006049
Github:linnarsson-lab/developing-human-brain?tab=readme-ov-file
CELLxGENE
142,215 cells
•
Krienen et al., 2023
A marmoset brain cell census reveals regional specialization of cellular identities
Explore
h5ad
Callithrix jacchus
Callithrix jacchus
Gabaergic neuron
Gabaergic neuron
Brodmann (1909) area 25
+11
Brodmann (1909) area 25
Late adult stage
+1
Late adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Callithrix jacchus
Cell type
Gabaergic neuron
Tissue
Brodmann (1909) area 25
Dorsolateral prefrontal cortex
Parietal cortex
Primary visual cortex
Temporal cortex
Prefrontal cortex
Temporal lobe
Primary somatosensory cortex
Primary auditory cortex
Brodmann (1909) area 23
Primary motor cortex
Secondary visual cortex
Developmental stage
Late adult stage
Prime adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
NeMo archive:dat-1je0mn3
submit.brainimagelibrary.org
Single Cell Portal
141,522 cells
Explore
Mus musculus
Mus musculus
Cell
Cell
Normal
Normal
Mixed sex
Mixed sex
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Cell
Tissue
Developmental stage
Disease
Normal
Sex
Mixed sex
Technology
10x 3' v2
Suspension type
1
2
…
28
29
30
31
32
…
390
391
Close