Mus musculus

Gabaergic neuron

Anterior cerebral artery Anterior olfactory nucleus Caudate-putamen Cerebral cortex Dentate gyrus of hippocampal formation Hippocampal field Lateral septal complex Nucleus accumbens Olfactory cortex Orbitofrontal cortex Pallidum Piriform cortex Primary auditory cortex Primary motor cortex Primary somatosensory cortex Secondary somatosensory cortex

Prime adult stage

Normal

Male

Scatac-seq

Nucleus

Homo sapiens

Mast cell Monocyte Dendritic cell

Abdomen Abdominal wall Adnexa of uterus Ascitic fluid Caecum Diaphragm Fallopian tube Intestine Large intestine Left ovary Liver Lymph node Omentum Paracolic gutter Parietal peritoneum Peritoneum Right ovary Transverse colon Urinary bladder

66-year-old stage 69-year-old stage 75-year-old stage 71-year-old stage 61-year-old stage 68-year-old stage 56-year-old stage 55-year-old stage 50-year-old stage 57-year-old stage 80 year-old and over stage 58-year-old stage 59-year-old stage 77-year-old stage 64-year-old stage 45-year-old stage 41-year-old stage 70-year-old stage 46-year-old stage 60-year-old stage 78-year-old stage 63-year-old stage 47-year-old stage 76-year-old stage

Malignant ovarian serous tumor

Female

10x 3' v3

Cell

Homo sapiens

Glioblast Immature t cell Glutamatergic neuron Oligodendrocyte precursor cell Endothelial cell Serotonergic neuron Oligodendrocyte Committed oligodendrocyte precursor Vascular leptomeningeal cell Neuroblast (sensu nematoda and protostomia) Schwann cell Leukocyte Dopaminergic neuron Microglial cell Neuroblast (sensu vertebrata) Radial glial cell Interneuron Glycinergic neuron Pericyte Progenitor cell Neuron Perivascular macrophage Purkinje cell Vascular associated smooth muscle cell Sensory neuron of dorsal root ganglion Gabaergic neuron Neural progenitor cell

Brain Cerebellum Diencephalon Hindbrain Medulla oblongata Midbrain Pons Telencephalon

13th week post-fertilization stage 12th week post-fertilization stage 9th week post-fertilization stage 10th week post-fertilization stage Embryonic stage

Normal

Female Male

10x multiome

Nucleus

Homo sapiens

T cell Neutrophil Stromal cell of endometrium Endothelial cell of lymphatic vessel Endothelial cell Mast cell Smooth muscle cell Preadipocyte Immature nk t cell Adipocyte Macrophage Mesothelial cell B cell Pericyte Monocyte Dendritic cell

Omental fat pad Subcutaneous adipose tissue

71-year-old stage 53-year-old stage 54-year-old stage 68-year-old stage 29-year-old stage 51-year-old stage 57-year-old stage 49-year-old stage 24-year-old stage 35-year-old stage 58-year-old stage 59-year-old stage 41-year-old stage 36-year-old stage 73-year-old stage

Normal

Female Male

10x 3' v3 Drop-seq

Nucleus Cell

Homo sapiens

Somatic stem cell Endothelial cell Intermediate mesodermal cell Schwann cell Paraxial cell Epithelial cell Mesodermal cell Splanchnic mesodermal cell Lateral mesodermal cell Sensory neuron Epidermal cell Endodermal cell Neuron Blood cell Fibroblast Primordial germ cell Neural progenitor cell

Embryoid body

Normal

Female Male

Sci-rna-seq3

Nucleus

Homo sapiens

Cycling alveolar macrophage Lung interstitial macrophage Ccl3-positive alveolar macrophage Lipid-associated macrophage Macrophage Metallothionein-positive alveolar macrophage Alveolar macrophage

Lung

2-year-old stage 8-year-old stage 6-month-old stage 10-month-old stage 3-year-old stage 1-year-old stage 11-month-old stage 5-year-old stage 6-year-old stage 4-year-old stage

Cystic fibrosis Normal

Female Male

10x 3' v3

Cell

Homo sapiens

Cd4-positive, alpha-beta t cell

T cell

Sixth decade stage Fifth decade stage Third decade stage Seventh decade stage Fourth decade stage Eighth decade stage Ninth decade stage

B-cell non-hodgkin lymphoma

Female Male

10x 5' v1

Cell

Homo sapiens

Hippocampal neuron Amygdala excitatory neuron Hippocampal ca1-3 neuron Dentate gyrus neuron L2/3-6 intratelencephalic projecting glutamatergic neuron L5 extratelencephalic projecting glutamatergic cortical neuron L6b glutamatergic cortical neuron L6 corticothalamic-projecting glutamatergic cortical neuron Near-projecting glutamatergic cortical neuron

Brodmann (1909) area 19 Brodmann (1909) area 24 Brodmann (1909) area 25 Brodmann (1909) area 38 Brodmann (1909) area 46 Agranular insular cortex Amygdala Anterior cingulate cortex Basolateral amygdaloid nuclear complex Bed nucleus of stria terminalis Body of caudate nucleus Central amygdaloid nucleus Central nucleus of inferior colliculus Claustrum of brain Corticomedial nuclear complex Cuneus cortex Dentate gyrus of hippocampal formation Globus pallidus Granular insular cortex Hippocampal field Hippocampal formation Inferior temporal gyrus Insula Lateral entorhinal cortex Medial dorsal nucleus of thalamus Medial entorhinal cortex Middle temporal gyrus Nucleus accumbens Parietal cortex Piriform cortex Pontine nuclear group Posterior parahippocampal gyrus Prefrontal cortex Primary auditory cortex Primary motor cortex Primary somatosensory cortex Primary visual cortex Pulvinar nucleus Putamen Secondary visual cortex Septal nuclear complex Subiculum Substantia innominata

42-year-old stage 29-year-old stage 58-year-old stage

Normal

Male

Snmc-seq2

Nucleus

Homo sapiens

Hippocampal neuron Amygdala excitatory neuron Hippocampal ca1-3 neuron Dentate gyrus neuron L2/3-6 intratelencephalic projecting glutamatergic neuron L5 extratelencephalic projecting glutamatergic cortical neuron L6b glutamatergic cortical neuron L6 corticothalamic-projecting glutamatergic cortical neuron Near-projecting glutamatergic cortical neuron

Brodmann (1909) area 19 Brodmann (1909) area 24 Brodmann (1909) area 25 Brodmann (1909) area 38 Brodmann (1909) area 46 Agranular insular cortex Amygdala Anterior cingulate cortex Basolateral amygdaloid nuclear complex Bed nucleus of stria terminalis Body of caudate nucleus Central amygdaloid nucleus Central nucleus of inferior colliculus Claustrum of brain Corticomedial nuclear complex Cuneus cortex Dentate gyrus of hippocampal formation Globus pallidus Granular insular cortex Hippocampal field Hippocampal formation Inferior temporal gyrus Insula Lateral entorhinal cortex Medial dorsal nucleus of thalamus Medial entorhinal cortex Middle temporal gyrus Nucleus accumbens Parietal cortex Piriform cortex Pontine nuclear group Posterior parahippocampal gyrus Prefrontal cortex Primary auditory cortex Primary motor cortex Primary somatosensory cortex Primary visual cortex Pulvinar nucleus Putamen Secondary visual cortex Septal nuclear complex Subiculum Substantia innominata

42-year-old stage 29-year-old stage 58-year-old stage

Normal

Male

Snmc-seq2

Nucleus

Homo sapiens

Neuron Neural progenitor cell

Forebrain

Carnegie stage 01

Normal

Female Male

10x 3' v3

Cell

Macaca mulatta

T cell Neutrophil Mast cell Epithelial cell Macrophage Eosinophil B cell

Disease

Seq-well

Homo sapiens

Central memory cd4-positive, alpha-beta t cell Natural killer cell Erythrocyte Gamma-delta t cell Myeloid dendritic cell, human Cd8-positive, alpha-beta t cell Platelet Effector memory cd4-positive, alpha-beta t cell Plasmacytoid dendritic cell Cd4-positive, alpha-beta cytotoxic t cell Memory regulatory t cell Naive thymus-derived cd8-positive, alpha-beta t cell Memory b cell Innate lymphoid cell Plasmablast Hematopoietic stem cell Cd4-positive, alpha-beta t cell Cd14-positive monocyte Naive regulatory t cell Cd14-low, cd16-positive monocyte B cell Naive thymus-derived cd4-positive, alpha-beta t cell Mucosal invariant t cell Central memory cd8-positive, alpha-beta t cell Naive b cell Double negative thymocyte Conventional dendritic cell Cd16-negative, cd56-bright natural killer cell, human Effector memory cd8-positive, alpha-beta t cell

Blood

Normal

10x 3' v3

Cell