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896
Nucleus
659
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Asap
43
Bgee
40
Cellxgene
2,080
Single cell portal
183
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Most cells
Fewest cells
2346
datasets
CELLxGENE
189,902 cells
•
Ivanova et al., 2023
mRNA COVID-19 vaccine elicits potent adaptive immune response without the acute inflammation of SARS-CoV-2 infection
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+9
T cell
Blood
Blood
Sixth decade stage
+3
Sixth decade stage
Covid-19
+1
Covid-19
Female
+1
Female
10x 5' v2
+1
10x 5' v2
Cell
Cell
Organism
Homo sapiens
Cell type
T cell
Natural killer cell
Gamma-delta t cell
Cd8-positive, alpha-beta t cell
Stem cell
Cd4-positive, alpha-beta t cell
B cell
Mucosal invariant t cell
Monocyte
Dendritic cell
Tissue
Blood
Developmental stage
Sixth decade stage
Fifth decade stage
Seventh decade stage
Fourth decade stage
Disease
Covid-19
Normal
Sex
Female
Male
Technology
10x 5' v2
10x 5' v1
Suspension type
Cell
Related Links
GEO series:GSE247917
Single Cell Portal
186,661 cells
Explore
Homo sapiens
Homo sapiens
T cell
+19
T cell
Age-related macular degeneration
+1
Age-related macular degeneration
Organism
Homo sapiens
Cell type
T cell
Muscle cell
Endothelial cell
Mature nk t cell
Retinal ganglion cell
Retinal pigment epithelial cell
Mast cell
Schwann cell
Melanocyte
Retinal bipolar neuron
Retinal cone cell
Mural cell
Retinal rod cell
Myeloid cell
Retina horizontal cell
Amacrine cell
B cell
Mueller cell
Astrocyte
Fibroblast
Tissue
Developmental stage
Disease
Age-related macular degeneration
Normal
Sex
Technology
Suspension type
CELLxGENE
186,271 cells
•
Braun et al., 2023
Comprehensive cell atlas of the first-trimester developing human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Glioblast
+5
Glioblast
Dorsal plus ventral thalamus
+2
Dorsal plus ventral thalamus
15th week post-fertilization stage
+2
15th week post-fertilization stage
Normal
Normal
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Glioblast
Oligodendrocyte
Neuroblast (sensu nematoda and protostomia)
Neuroblast (sensu vertebrata)
Radial glial cell
Neuron
Tissue
Dorsal plus ventral thalamus
Hypothalamus
Diencephalon
Developmental stage
15th week post-fertilization stage
Carnegie stage 20
9th week post-fertilization stage
Disease
Normal
Sex
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
EGA dataset:EGAD00001006049
Github:linnarsson-lab/developing-human-brain?tab=readme-ov-file
CELLxGENE
185,477 cells
•
Jorstad et al., 2023
Transcriptomic cytoarchitecture reveals principles of human neocortex organization
Explore
h5ad
Homo sapiens
Homo sapiens
Pvalb chandelier gabaergic interneuron
+2
Pvalb chandelier gabaergic interneuron
Dorsolateral prefrontal cortex
+7
Dorsolateral prefrontal cortex
42-year-old stage
+5
42-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Pvalb chandelier gabaergic interneuron
Pvalb gabaergic interneuron
Sst gabaergic interneuron
Tissue
Dorsolateral prefrontal cortex
Primary visual cortex
Middle temporal gyrus
Primary somatosensory cortex
Primary auditory cortex
Primary motor cortex
Anterior cingulate cortex
Angular gyrus
Developmental stage
42-year-old stage
43-year-old stage
Sixth decade stage
29-year-old stage
50-year-old stage
60-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
Github:AllenInstitute/human_cross_areal
NeMo archive:dat-rg2rc5m
Allen Brain Map Atlases:rnaseq/human-multiple-cortical-areas-smart-seq
CELLxGENE
185,226 cells
•
Li et al., 2023
A single-cell atlas of CD19 chimeric antigen receptor T cells
Explore
h5ad
Homo sapiens
Homo sapiens
Cd8-positive, alpha-beta t cell
Cd8-positive, alpha-beta t cell
T cell
T cell
Sixth decade stage
+6
Sixth decade stage
B-cell non-hodgkin lymphoma
B-cell non-hodgkin lymphoma
Female
+1
Female
10x 5' v1
10x 5' v1
Cell
Cell
Organism
Homo sapiens
Cell type
Cd8-positive, alpha-beta t cell
Tissue
T cell
Developmental stage
Sixth decade stage
Fifth decade stage
Third decade stage
Seventh decade stage
Fourth decade stage
Eighth decade stage
Ninth decade stage
Disease
B-cell non-hodgkin lymphoma
Sex
Female
Male
Technology
10x 5' v1
Suspension type
Cell
Related Links
EGA dataset:EGAD00001006325
CELLxGENE collection:be21c2d1-2392-47d0-96fb-c625d115e0dc
DOI:10.1038/s41591-020-1061-7
CELLxGENE
183,161 cells
•
Kedlian et al., 2024
Human skeletal muscle aging atlas
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+42
T cell
Intercostal muscle
Intercostal muscle
Sixth decade stage
+5
Sixth decade stage
Normal
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Cell
+1
Cell
Organism
Homo sapiens
Cell type
T cell
Muscle cell
Blood vessel endothelial cell
Natural killer cell
Endothelial cell of lymphatic vessel
Erythrocyte
Non-myelinating schwann cell
Mast cell
Cd8-positive, alpha-beta t cell
Endothelial cell of arteriole
Tendon cell
Endothelial cell of artery
Capillary endothelial cell
Smooth muscle cell
Plasmacytoid dendritic cell
Cd14-positive, cd16-low monocyte
Mature neutrophil
Adipocyte
Macrophage
Cd4-positive, cd25-positive, alpha-beta regulatory t cell
Memory b cell
Cd16-positive, cd56-dim natural killer cell, human
Mural cell
Fibroblast of the aortic adventitia
Plasma cell
Cd4-positive, alpha-beta t cell
Vein endothelial cell
Eosinophil
Type ii muscle cell
Cd14-low, cd16-positive monocyte
Mesothelial cell
Perineurial cell
B cell
Pericyte
Naive t cell
Skeletal muscle satellite stem cell
Type i muscle cell
Naive b cell
Conventional dendritic cell
Fibroblast
Myelinating schwann cell
Cd16-negative, cd56-bright natural killer cell, human
Immature neutrophil
Tissue
Intercostal muscle
Developmental stage
Sixth decade stage
Third decade stage
Seventh decade stage
Fourth decade stage
Eighth decade stage
Young adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Nucleus
Related Links
muscleageingcellatlas.org
ArrayExpress BioStudies:E-MTAB-13874
CELLxGENE
182,548 cells
•
Pelka et al., 2021
Spatially organized multicellular immune hubs in human colorectal cancer
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+23
T cell
Colorectum
Colorectum
69-year-old stage
+34
69-year-old stage
Normal
+1
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
T cell
Effector cd8-positive, alpha-beta t cell
Germinal center b cell
Granulocyte
Mature conventional dendritic cell
Natural killer cell
Gamma-delta t cell
Activated cd4-positive, alpha-beta t cell
Mature nk t cell
Cd8-positive, alpha-beta t cell
Iga plasma cell
Plasmacytoid dendritic cell
Igg plasma cell
Cd8-positive, alpha-beta memory t cell
Group 3 innate lymphoid cell
T-helper 17 cell
Macrophage
Cd4-positive, cd25-positive, alpha-beta regulatory t cell
Mature b cell
Cd4-positive, alpha-beta t cell
T follicular helper cell
Monocyte
Conventional dendritic cell
Dendritic cell
Tissue
Colorectum
Developmental stage
69-year-old stage
91-year-old stage
42-year-old stage
89-year-old stage
71-year-old stage
53-year-old stage
61-year-old stage
52-year-old stage
48-year-old stage
56-year-old stage
55-year-old stage
84-year-old stage
82-year-old stage
50-year-old stage
90-year-old stage
51-year-old stage
57-year-old stage
72-year-old stage
81-year-old stage
49-year-old stage
35-year-old stage
58-year-old stage
59-year-old stage
67-year-old stage
77-year-old stage
64-year-old stage
45-year-old stage
62-year-old stage
70-year-old stage
60-year-old stage
78-year-old stage
36-year-old stage
47-year-old stage
76-year-old stage
73-year-old stage
Disease
Normal
Colon adenocarcinoma
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
BroadInstitute Single-Cell Portal:SCP1162/human-colon-cancer-atlas-c295#study-visualize
broad.io
GEO series:GSE178341
dbGaP Study:phs002407
HumanCellAtlas:6f03e4ad-9305-4bfa-a5b6-929ffb1d94bd
CELLxGENE
182,151 cells
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+17
T cell
Optic choroid
+3
Optic choroid
75-year-old stage
+38
75-year-old stage
Normal
Normal
Female
+1
Female
10x 5' v2
+2
10x 5' v2
Cell
Cell
Organism
Homo sapiens
Cell type
T cell
Endothelial cell of venule
Natural killer cell
Non-myelinating schwann cell
Retinal pigment epithelial cell
Mast cell
Endothelial cell of arteriole
Blood vessel smooth muscle cell
Melanocyte
Macrophage
Fenestrated endothelial cell
Plasma cell
B cell
Pericyte
Monocyte
Fibroblast
Myelinating schwann cell
Dendritic cell
Tissue
Optic choroid
Chorioretinal region
Eyeball of camera-type eye
Pigmented layer of retina
Developmental stage
75-year-old stage
19th week post-fertilization stage
21st week post-fertilization stage
89-year-old stage
43-year-old stage
13th week post-fertilization stage
61-year-old stage
88-year-old stage
52-year-old stage
54-year-old stage
39-year-old stage
84-year-old stage
15th week post-fertilization stage
82-year-old stage
80-year-old stage
17th week post-fertilization stage
12th week post-fertilization stage
16th week post-fertilization stage
81-year-old stage
6-month-old stage
10th week post-fertilization stage
80 year-old and over stage
27th week post-fertilization stage
77-year-old stage
64-year-old stage
22nd week post-fertilization stage
86-year-old stage
41-year-old stage
78-year-old stage
1-month-old stage
Newborn stage (0-28 days)
63-year-old stage
76-year-old stage
79-year-old stage
83-year-old stage
11-year-old stage
24th week post-fertilization stage
40-year-old stage
11th week post-fertilization stage
Disease
Normal
Sex
Female
Male
Technology
10x 5' v2
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
celltype.info
CELLxGENE
180,956 cells
•
Sepp et al., 2023
Cellular development and evolution of the mammalian cerebellum
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+23
T cell
Hemisphere part of cerebellar posterior lobe
+4
Hemisphere part of cerebellar posterior lobe
Carnegie stage 19
+15
Carnegie stage 19
Heart failure
+3
Heart failure
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
T cell
Glioblast
Central nervous system macrophage
Glutamatergic neuron
Oligodendrocyte precursor cell
Oligodendrocyte
Committed oligodendrocyte precursor
Erythroid lineage cell
Cerebellar granule cell
Leukocyte
Brain vascular cell
Microglial cell
Neuroblast (sensu vertebrata)
Immature astrocyte
Meningeal macrophage
Interneuron
Noradrenergic cell
Bergmann glial cell
Macroglial cell
Progenitor cell
Cerebellar granule cell precursor
Purkinje cell
Unipolar brush cell
Gabaergic neuron
Tissue
Hemisphere part of cerebellar posterior lobe
Cerebellar cortex
Cerebellum
Cerebellum vermis lobule
Dentate nucleus
Developmental stage
Carnegie stage 19
42-year-old stage
52-year-old stage
44-year-old stage
9-month-old stage
20th week post-fertilization stage
17th week post-fertilization stage
9th week post-fertilization stage
6-month-old stage
3-year-old stage
Carnegie stage 22
46-year-old stage
Newborn stage (0-28 days)
7-month-old stage
Carnegie stage 18
11th week post-fertilization stage
Disease
Heart failure
Congenital heart disease
Acute myocardial infarction
Normal
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Nucleus
Related Links
home.kaessmannlab.org
apps.kaessmannlab.org
gitlab.com
DOI:10.11588/data/QDOC4E
Single Cell Portal
179,697 cells
Explore
Homo sapiens
Homo sapiens
T cell
+13
T cell
Atrial fibrillation
+1
Atrial fibrillation
10x 3' v3
10x 3' v3
Organism
Homo sapiens
Cell type
T cell
Cardiac atrium fibroblast
Cardiac endothelial cell
Endothelial cell of lymphatic vessel
Mast cell
Cardiac neuron
Adipocyte
Macrophage
Megakaryocyte
Mesothelial cell
Cardiac muscle cell
B cell
Pericyte
Vascular associated smooth muscle cell
Tissue
Developmental stage
Disease
Atrial fibrillation
Normal
Sex
Technology
10x 3' v3
Suspension type
CELLxGENE
178,815 cells
•
Kamath et al., 2022
Single-cell genomic profiling of human dopamine neurons identifies a population that selectively degenerates in Parkinson’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Oligodendrocyte
Oligodendrocyte
Substantia nigra pars compacta
Substantia nigra pars compacta
75-year-old stage
+12
75-year-old stage
Parkinson disease
+2
Parkinson disease
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Oligodendrocyte
Tissue
Substantia nigra pars compacta
Developmental stage
75-year-old stage
91-year-old stage
89-year-old stage
92-year-old stage
82-year-old stage
90-year-old stage
74-year-old stage
49-year-old stage
70-year-old stage
78-year-old stage
76-year-old stage
79-year-old stage
83-year-old stage
Disease
Parkinson disease
Normal
Lewy body dementia
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
BroadInstitute Single-Cell Portal:SCP1768
macoskolab.com
HumanCellAtlas:c412be53-cf95-47c7-980c-c0a0caa2d3a0
GEO series:GSE178265
CELLxGENE
175,387 cells
•
Tian et al., 2023
Single-cell DNA methylation and 3D genome architecture in the human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Cerebellar neuron
+11
Cerebellar neuron
Brodmann (1909) area 25
+43
Brodmann (1909) area 25
42-year-old stage
+2
42-year-old stage
Normal
Normal
Male
Male
Snmc-seq2
Snmc-seq2
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Cerebellar neuron
Direct pathway medium spiny neuron
Pvalb chandelier gabaergic interneuron
Lamp5 gabaergic interneuron
Vip gabaergic interneuron
Indirect pathway medium spiny neuron
Thalamic excitatory neuron
Pvalb gabaergic interneuron
Central nervous system neuron
Sncg gabaergic interneuron
Purkinje cell
Sst gabaergic interneuron
Tissue
Brodmann (1909) area 25
Corticomedial nuclear complex
Insula
Parietal cortex
Brodmann (1909) area 19
Medial dorsal nucleus of thalamus
Primary visual cortex
Claustrum of brain
Inferior temporal gyrus
Subiculum
Pontine nuclear group
Globus pallidus
Piriform cortex
Hippocampal field
Prefrontal cortex
Middle temporal gyrus
Central amygdaloid nucleus
Septal nuclear complex
Brodmann (1909) area 38
Lateral entorhinal cortex
Medial entorhinal cortex
Central nucleus of inferior colliculus
Agranular insular cortex
Nucleus accumbens
Substantia innominata
Primary somatosensory cortex
Cerebellum
Pulvinar nucleus
Primary auditory cortex
Primary motor cortex
Brodmann (1909) area 24
Brodmann (1909) area 46
Posterior parahippocampal gyrus
Basolateral amygdaloid nuclear complex
Hippocampal formation
Granular insular cortex
Anterior cingulate cortex
Cuneus cortex
Dentate gyrus of hippocampal formation
Body of caudate nucleus
Secondary visual cortex
Bed nucleus of stria terminalis
Putamen
Amygdala
Developmental stage
42-year-old stage
29-year-old stage
58-year-old stage
Disease
Normal
Sex
Male
Technology
Snmc-seq2
Suspension type
Nucleus
Related Links
GEO series:GSE215353
NeMo archive:dat-jx4eu3g
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