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Cell
890
Nucleus
655
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Asap
43
Bgee
40
Cellxgene
2,066
Single cell portal
179
Sort
Most cells
Fewest cells
2328
datasets
CELLxGENE
170,281 cells
•
Reichart et al., 2022
Pathogenic variants damage cell composition and single cell transcription in cardiomyopathies
Explore
h5ad
Homo sapiens
Homo sapiens
Mural cell
Mural cell
Interventricular septum
+3
Interventricular septum
Fourth decade stage
+7
Fourth decade stage
Normal
+3
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Mural cell
Tissue
Interventricular septum
Apex of heart
Heart left ventricle
Heart right ventricle
Developmental stage
Fourth decade stage
Postnatal stage
Eighth decade stage
Fifth decade stage
Pediatric stage
Seventh decade stage
Third decade stage
Sixth decade stage
Disease
Normal
Dilated cardiomyopathy
Non-compaction cardiomyopathy
Arrhythmogenic right ventricular cardiomyopathy
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Nucleus
Related Links
Zenodo record:6962685#.YuyuihxBzKE
EGA Study:EGAS00001006374
Github:heiniglab/DCM_heart_cell_atlas
CELLxGENE
168,860 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
L2/3-6 intratelencephalic projecting glutamatergic neuron
L2/3-6 intratelencephalic projecting glutamatergic neuron
Middle temporal gyrus
Middle temporal gyrus
80-year-old stage
+23
80-year-old stage
Normal
+1
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
L2/3-6 intratelencephalic projecting glutamatergic neuron
Tissue
Middle temporal gyrus
Developmental stage
80-year-old stage
85-year-old stage
82-year-old stage
70-year-old stage
77-year-old stage
50-year-old stage
86-year-old stage
60-year-old stage
80 year-old and over stage
89-year-old stage
65-year-old stage
75-year-old stage
Adult stage
78-year-old stage
68-year-old stage
72-year-old stage
88-year-old stage
84-year-old stage
69-year-old stage
43-year-old stage
29-year-old stage
87-year-old stage
81-year-old stage
83-year-old stage
Disease
Normal
Dementia
Sex
Female
Male
Technology
10x 3' v3
10x multiome
Suspension type
Nucleus
Related Links
Alzheimer's Disease Research Center
Adult Changes in Thought Study
BRaIN-lab
AD knowledge portal:syn26223298
AWS Open Data:allen-sea-ad-atlas
Allen Brain Map:seattle-alzheimers-disease
CELLxGENE
168,295 cells
•
Pelka et al., 2021
Spatially organized multicellular immune hubs in human colorectal cancer
Explore
h5ad
Homo sapiens
Homo sapiens
Colonocyte
+8
Colonocyte
Colorectum
Colorectum
91-year-old stage
+34
91-year-old stage
Normal
+1
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Colonocyte
Colon goblet cell
Glandular secretory epithelial cell
Stem cell
Enteroendocrine cell
Tuft cell of colon
Enterocyte
Intestinal epithelial cell
Goblet cell
Tissue
Colorectum
Developmental stage
91-year-old stage
82-year-old stage
70-year-old stage
77-year-old stage
50-year-old stage
57-year-old stage
76-year-old stage
62-year-old stage
52-year-old stage
60-year-old stage
48-year-old stage
64-year-old stage
89-year-old stage
45-year-old stage
67-year-old stage
71-year-old stage
78-year-old stage
36-year-old stage
59-year-old stage
47-year-old stage
56-year-old stage
58-year-old stage
61-year-old stage
51-year-old stage
49-year-old stage
42-year-old stage
35-year-old stage
53-year-old stage
72-year-old stage
73-year-old stage
84-year-old stage
90-year-old stage
69-year-old stage
81-year-old stage
55-year-old stage
Disease
Normal
Colon adenocarcinoma
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
BroadInstitute Single-Cell Portal:SCP1162/human-colon-cancer-atlas-c295#study-visualize
broad.io
GEO series:GSE178341
HumanCellAtlas:6f03e4ad-9305-4bfa-a5b6-929ffb1d94bd
dbGaP Study:phs002407
CELLxGENE
167,910 cells
•
Ulrich et al., 2024
Cellular heterogeneity and dynamics of the human uterus in healthy premenopausal women
Explore
h5ad
Homo sapiens
Homo sapiens
Myoepithelial cell
+29
Myoepithelial cell
Endometrium
+1
Endometrium
Young adult stage
+7
Young adult stage
Normal
Normal
Female
Female
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Myoepithelial cell
Circulating fibrocyte
Capillary endothelial cell
Ciliated epithelial cell
Innate lymphoid cell
Cd4-positive, alpha-beta memory t cell
Endothelial cell of lymphatic vessel
Leukocyte
Macrophage
Endothelial cell of uterus
Stromal cell of endometrium
Stromal cell
Glandular secretory epithelial cell
Mast cell
Epithelial cell
Endothelial cell of venule
Perivascular cell
Luminal endometrial multiciliated epithelial cell
Memory t cell
Cd8-positive, alpha-beta memory t cell
Fibro/adipogenic progenitor cell
Fibroblast
Blood vessel endothelial cell
Hematopoietic precursor cell
Decidual cell
B cell
Regulatory t cell
Natural killer cell
Endothelial cell of artery
Uterine smooth muscle cell
Tissue
Endometrium
Myometrium
Developmental stage
Young adult stage
32-year-old stage
23-year-old stage
37-year-old stage
28-year-old stage
31-year-old stage
26-year-old stage
29-year-old stage
Disease
Normal
Sex
Female
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
ArrayExpress BioStudies:E-MTAB-10287
GEO series:GSE111976
GEO series:GSE260658
Single Cell Portal
167,856 cells
Explore
🔧
Cell type:
Invalid ontology prefix 'GO'. Expected one of: CL, FBbt, WBbt, ZFA
Homo sapiens
Homo sapiens
Kupffer cell
+8
Kupffer cell
Normal
+6
Normal
10x 3' v3
+1
10x 3' v3
Organism
Homo sapiens
Cell type
Kupffer cell
Classical monocyte
Non-classical monocyte
Macrophage
Alveolar macrophage
Monocyte
Conventional dendritic cell
Mature conventional dendritic cell
Apoptosis fated cell
Tissue
Developmental stage
Disease
Normal
Hepatocellular carcinoma
Metabolic dysfunction-associated steatohepatitis
Alcoholic liver cirrhosis
Pulmonary fibrosis
Primary biliary cholangitis
Pulmonary systemic sclerosis
Sex
Technology
10x 3' v3
10x 3' v2
Suspension type
CELLxGENE
167,598 cells
•
Guilliams et al., 2022
Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches
Explore
h5ad
Homo sapiens
Homo sapiens
Macrophage
+13
Macrophage
Liver
Liver
66-year-old stage
+15
66-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Cell
+1
Cell
Organism
Homo sapiens
Cell type
Macrophage
Cholangiocyte
Neutrophil
Monocyte
Conventional dendritic cell
Fibroblast
Hepatocyte
Endothelial cell
B cell
Plasma cell
T cell
Plasmacytoid dendritic cell
Basophil
Natural killer cell
Tissue
Liver
Developmental stage
66-year-old stage
77-year-old stage
46-year-old stage
64-year-old stage
33-year-old stage
67-year-old stage
75-year-old stage
Adult stage
28-year-old stage
58-year-old stage
68-year-old stage
49-year-old stage
53-year-old stage
72-year-old stage
73-year-old stage
55-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Nucleus
Related Links
GEO series:GSE192742
livercellatlas.org
HumanCellAtlas:425c2759-db66-4c93-a358-a562c069b1f1
CELLxGENE
167,283 cells
•
Krishna et al., 2021
Single-cell sequencing links multiregional immune landscapes and tissue-resident T cells in ccRCC to tumor topology and therapy efficacy
Explore
h5ad
Homo sapiens
Homo sapiens
Myofibroblast cell
+16
Myofibroblast cell
Blood
+2
Blood
50-year-old stage
+5
50-year-old stage
Clear cell renal carcinoma
Clear cell renal carcinoma
Female
+1
Female
10x 5' v2
10x 5' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Myofibroblast cell
Activated cd4-positive, alpha-beta t cell, human
Cd4-positive, alpha-beta t cell
Cd14-positive, cd16-positive monocyte
Mast cell
Naive t cell
Megakaryocyte
Cd14-positive monocyte
Abnormal cell
Dendritic cell, human
Conventional dendritic cell
Naive thymus-derived cd8-positive, alpha-beta t cell
Endothelial cell
B cell
Effector cd4-positive, alpha-beta t cell
Regulatory t cell
Mature nk t cell
Tissue
Blood
Kidney
Lymph node
Developmental stage
50-year-old stage
57-year-old stage
64-year-old stage
63-year-old stage
54-year-old stage
69-year-old stage
Disease
Clear cell renal carcinoma
Sex
Female
Male
Technology
10x 5' v2
Suspension type
Cell
Related Links
ncbi.nlm.nih.gov
trace.ncbi.nlm.nih.gov
HumanCellAtlas:12f32054-8f18-4dae-8959-bfce7e3108e7
CELLxGENE
167,181 cells
•
Li et al., 2021
An atlas of gene regulatory elements in adult mouse cerebrum
Explore
h5ad
Mus musculus
Mus musculus
Gabaergic neuron
Gabaergic neuron
Orbitofrontal cortex
+15
Orbitofrontal cortex
Prime adult stage
Prime adult stage
Normal
Normal
Male
Male
Scatac-seq
Scatac-seq
Nucleus
Nucleus
Organism
Mus musculus
Cell type
Gabaergic neuron
Tissue
Orbitofrontal cortex
Anterior olfactory nucleus
Caudate-putamen
Dentate gyrus of hippocampal formation
Primary somatosensory cortex
Olfactory cortex
Lateral septal complex
Primary auditory cortex
Anterior cerebral artery
Pallidum
Cerebral cortex
Primary motor cortex
Hippocampal field
Piriform cortex
Nucleus accumbens
Secondary somatosensory cortex
Developmental stage
Prime adult stage
Disease
Normal
Sex
Male
Technology
Scatac-seq
Suspension type
Nucleus
Related Links
Github:yal054/snATACutils
NeMo archive:dat-wywv153
catlas.org
Github:r3fang/SnapATAC
renlab.sdsc.edu
CELLxGENE
166,895 cells
•
Vázquez-García et al., 2022
Ovarian cancer mutational processes drive site-specific immune evasion
Explore
h5ad
Homo sapiens
Homo sapiens
Mast cell
+2
Mast cell
Abdominal wall
+18
Abdominal wall
66-year-old stage
+23
66-year-old stage
Malignant ovarian serous tumor
Malignant ovarian serous tumor
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Mast cell
Monocyte
Dendritic cell
Tissue
Abdominal wall
Liver
Adnexa of uterus
Right ovary
Caecum
Fallopian tube
Transverse colon
Urinary bladder
Omentum
Diaphragm
Parietal peritoneum
Peritoneum
Paracolic gutter
Ascitic fluid
Abdomen
Intestine
Left ovary
Large intestine
Lymph node
Developmental stage
66-year-old stage
70-year-old stage
77-year-old stage
50-year-old stage
57-year-old stage
76-year-old stage
46-year-old stage
60-year-old stage
80 year-old and over stage
64-year-old stage
45-year-old stage
75-year-old stage
71-year-old stage
78-year-old stage
63-year-old stage
59-year-old stage
47-year-old stage
56-year-old stage
58-year-old stage
68-year-old stage
61-year-old stage
69-year-old stage
41-year-old stage
55-year-old stage
Disease
Malignant ovarian serous tumor
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
dbGaP Study:phs002857
synapse.org:#!Synapse:syn25569736
componcmsk.org
cbioportal.org
Github:shahcompbio/spectrum-tme
GEO series:GSE180661
CELLxGENE
166,785 cells
•
Mannens et al., 2024
Chromatin accessibility during human first-trimester neurodevelopment
Explore
h5ad
Homo sapiens
Homo sapiens
Immature t cell
+26
Immature t cell
Diencephalon
+7
Diencephalon
9th week post-fertilization stage
+4
9th week post-fertilization stage
Normal
Normal
Female
+1
Female
10x multiome
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Immature t cell
Serotonergic neuron
Radial glial cell
Schwann cell
Glutamatergic neuron
Vascular leptomeningeal cell
Oligodendrocyte precursor cell
Oligodendrocyte
Gabaergic neuron
Leukocyte
Neuroblast (sensu vertebrata)
Neuroblast (sensu nematoda and protostomia)
Glycinergic neuron
Committed oligodendrocyte precursor
Interneuron
Neural progenitor cell
Progenitor cell
Dopaminergic neuron
Microglial cell
Vascular associated smooth muscle cell
Sensory neuron of dorsal root ganglion
Pericyte
Endothelial cell
Perivascular macrophage
Neuron
Purkinje cell
Glioblast
Tissue
Diencephalon
Cerebellum
Telencephalon
Brain
Pons
Midbrain
Medulla oblongata
Hindbrain
Developmental stage
9th week post-fertilization stage
13th week post-fertilization stage
12th week post-fertilization stage
10th week post-fertilization stage
Embryonic stage
Disease
Normal
Sex
Female
Male
Technology
10x multiome
Suspension type
Nucleus
Related Links
EGA Study:EGAS00001007472
Github:linnarsson-lab/fetal_brain_multiomics
CELLxGENE
166,149 cells
•
Emont et al., 2022
A single-cell atlas of human and mouse white adipose tissue
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell of lymphatic vessel
+15
Endothelial cell of lymphatic vessel
Omental fat pad
+1
Omental fat pad
57-year-old stage
+14
57-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Nucleus
+1
Nucleus
Organism
Homo sapiens
Cell type
Endothelial cell of lymphatic vessel
Preadipocyte
Macrophage
Mesothelial cell
Stromal cell of endometrium
Mast cell
Adipocyte
Neutrophil
Monocyte
Pericyte
Endothelial cell
B cell
Immature nk t cell
Dendritic cell
T cell
Smooth muscle cell
Tissue
Omental fat pad
Subcutaneous adipose tissue
Developmental stage
57-year-old stage
71-year-old stage
36-year-old stage
59-year-old stage
54-year-old stage
58-year-old stage
68-year-old stage
51-year-old stage
49-year-old stage
35-year-old stage
53-year-old stage
73-year-old stage
24-year-old stage
29-year-old stage
41-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Drop-seq
Suspension type
Nucleus
Cell
Related Links
BroadInstitute Single-Cell Portal:SCP1376
gitlab.com
GEO series:GSE176067
GEO series:GSE176171
dbGaP Study:phs002766
CELLxGENE
166,085 cells
•
Wellington et al., 2024
Developmental regulation of endothelial-to-hematopoietic transition from induced pluripotent stem cells
Explore
h5ad
Homo sapiens
Homo sapiens
Primordial germ cell
+16
Primordial germ cell
Embryoid body
Embryoid body
Normal
Normal
Female
+1
Female
Sci-rna-seq3
Sci-rna-seq3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Primordial germ cell
Schwann cell
Intermediate mesodermal cell
Endodermal cell
Sensory neuron
Paraxial cell
Mesodermal cell
Blood cell
Epithelial cell
Somatic stem cell
Splanchnic mesodermal cell
Neural progenitor cell
Fibroblast
Endothelial cell
Epidermal cell
Lateral mesodermal cell
Neuron
Tissue
Embryoid body
Developmental stage
Disease
Normal
Sex
Female
Male
Technology
Sci-rna-seq3
Suspension type
Nucleus
Related Links
GEO series:GSE274082
GEO series:GSE274084
Github:FredHutch/Wellington-et-al-2024
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