Home
Data
Contribute
Stats
Resources
Metadata schema
Tools
Community
About
Contact us
Organism
0
Clear
Cell Type
0
Clear
Tissue
0
Clear
Developmental Stage
0
Clear
Disease
0
Clear
Sex
0
Clear
Technology
0
Clear
Suspension Type
0
Clear
Cell
893
Nucleus
659
Data Source
0
Clear
Asap
43
Bgee
40
Cellxgene
2,077
Single cell portal
179
Sort
Most cells
Fewest cells
2339
datasets
CELLxGENE
703 cells
•
Sampath Kumar et al., 2023
Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis
Explore
h5ad
Mus musculus
Mus musculus
Notochordal cell
+14
Notochordal cell
Embryo
Embryo
Theiler stage 14
Theiler stage 14
Normal
Normal
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Notochordal cell
Spinal cord interneuron
Paraxial cell
Neurectodermal cell
Splanchnic mesodermal cell
Hemangioblast
Cardiac valve cell
Endodermal cell
Primitive red blood cell
Midbrain dopaminergic neuron
Anterior visceral endoderm cell
Premigratory neural crest cell
Mesodermal cell
Neuroplacodal cell
Surface ectodermal cell
Tissue
Embryo
Developmental stage
Theiler stage 14
Disease
Normal
Sex
Technology
Slide-seqv2
Suspension type
Related Links
Chen Lab
GEO series:GSE197353
figshare.com
FigShare Dataset:E8_5_Embryo2_h5ad/21695849/1
FigShare Dataset:E9_0_Embryo_h5ad/21695879/1
CELLxGENE
649 cells
•
He et al., 2022
A human fetal lung cell atlas uncovers proximal-distal gradients of differentiation and key regulators of epithelial fates
Explore
h5ad
Homo sapiens
Homo sapiens
Schwann cell
+4
Schwann cell
Lung
Lung
9th week post-fertilization stage
+7
9th week post-fertilization stage
Normal
Normal
Female
+1
Female
10x 5' v1
10x 5' v1
Cell
Cell
Organism
Homo sapiens
Cell type
Schwann cell
Schwann cell precursor
Neuron
Neural progenitor cell
Immature schwann cell
Tissue
Lung
Developmental stage
9th week post-fertilization stage
11th week post-fertilization stage
Carnegie stage 16
15th week post-fertilization stage
20th week post-fertilization stage
Carnegie stage 19
18th week post-fertilization stage
22nd week post-fertilization stage
Disease
Normal
Sex
Female
Male
Technology
10x 5' v1
Suspension type
Cell
Related Links
ArrayExpress BioStudies:E-MTAB-11267
ArrayExpress BioStudies:E-MTAB-11265
Sanger Dataset:fetal-lung
genome.ucsc.edu
Github:Peng-He-Lab/Human_fetal_lung_cell_atlas_2022
ArrayExpress BioStudies:E-MTAB-11278
ArrayExpress BioStudies:E-MTAB-11266
CELLxGENE
637 cells
•
Johansen et al., 2023
Interindividual variation in human cortical cell type abundance and expression
Explore
h5ad
Homo sapiens
Homo sapiens
Vascular leptomeningeal cell
Vascular leptomeningeal cell
Neocortex
Neocortex
Adult stage
Adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Vascular leptomeningeal cell
Tissue
Neocortex
Developmental stage
Adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
knowledge.brain-map.org
Allen Brain Map Atlases:rnaseq/human-mtg-10x_sea-ad
Allen Brain Map:classes/multimodal-characterization
NeMo archive:dat-p3eei0g
Github:AllenInstitute/human_variation
CELLxGENE
636 cells
•
Scala et al., 2020
Phenotypic variation of transcriptomic cell types in mouse motor cortex
Explore
h5ad
Mus musculus
Mus musculus
Gabaergic neuron
+1
Gabaergic neuron
Primary motor cortex
Primary motor cortex
11-week-old stage
+22
11-week-old stage
Normal
Normal
Female
+1
Female
Patch-seq
Patch-seq
Cell
Cell
Organism
Mus musculus
Cell type
Gabaergic neuron
Glutamatergic neuron
Tissue
Primary motor cortex
Developmental stage
11-week-old stage
24-week-old stage
19-week-old stage
8-week-old stage
29-week-old stage
14-week-old stage
10-week-old stage
16-week-old stage
25-week-old stage
17-week-old stage
12-week-old stage
8-month-old stage
20-week-old stage
6-week-old stage
9-week-old stage
18-week-old stage
7-week-old stage
15-week-old stage
22-week-old stage
13-week-old stage
26-week-old stage
5-week-old stage
23-week-old stage
Disease
Normal
Sex
Female
Male
Technology
Patch-seq
Suspension type
Cell
Related Links
Andreas Tolias lab
NeMo archive:dat-kq04hua
CELLxGENE
628 cells
•
Scala et al., 2020
Phenotypic variation of transcriptomic cell types in mouse motor cortex
Explore
h5ad
Mus musculus
Mus musculus
Gabaergic neuron
+1
Gabaergic neuron
Primary motor cortex
Primary motor cortex
11-week-old stage
+22
11-week-old stage
Normal
Normal
Female
+1
Female
Patch-seq
Patch-seq
Cell
Cell
Organism
Mus musculus
Cell type
Gabaergic neuron
Glutamatergic neuron
Tissue
Primary motor cortex
Developmental stage
11-week-old stage
24-week-old stage
19-week-old stage
8-week-old stage
29-week-old stage
14-week-old stage
10-week-old stage
16-week-old stage
25-week-old stage
17-week-old stage
12-week-old stage
8-month-old stage
20-week-old stage
6-week-old stage
9-week-old stage
18-week-old stage
7-week-old stage
15-week-old stage
22-week-old stage
13-week-old stage
26-week-old stage
5-week-old stage
23-week-old stage
Disease
Normal
Sex
Female
Male
Technology
Patch-seq
Suspension type
Cell
Related Links
Andreas Tolias lab
NeMo archive:dat-kq04hua
ASAP
607 cells
•
Li et al., 2022
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly
Explore
h5ad
Drosophila melanogaster
Drosophila melanogaster
Muscle cell
+6
Muscle cell
Leg
Leg
Day 5 of adulthood
Day 5 of adulthood
Normal
Normal
Female
+1
Female
Smart-seq2
Smart-seq2
Organism
Drosophila melanogaster
Cell type
Muscle cell
Epithelial cell
Hemocyte
Sensory neuron
Gustatory receptor neuron
Mechanosensory neuron
Mechanosensory neuron of leg chordotonal organ
Tissue
Leg
Developmental stage
Day 5 of adulthood
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
Suspension type
ASAP
594 cells
•
Li et al., 2022
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly
Explore
h5ad
Drosophila melanogaster
Drosophila melanogaster
Enteroendocrine cell
+9
Enteroendocrine cell
Gut
Gut
Day 5 of adulthood
Day 5 of adulthood
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Organism
Drosophila melanogaster
Cell type
Enteroendocrine cell
Copper cell
Adult differentiating enterocyte
Midgut large flat cell
Enteroblast
Muscle cell
Adult midgut enterocyte
Intestinal stem cell
Enterocyte of anterior adult midgut epithelium
Enterocyte of posterior adult midgut epithelium
Tissue
Gut
Developmental stage
Day 5 of adulthood
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
CELLxGENE
582 cells
•
Johansen et al., 2023
Interindividual variation in human cortical cell type abundance and expression
Explore
h5ad
Homo sapiens
Homo sapiens
Cerebral cortex endothelial cell
Cerebral cortex endothelial cell
Neocortex
Neocortex
Adult stage
Adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Cerebral cortex endothelial cell
Tissue
Neocortex
Developmental stage
Adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
knowledge.brain-map.org
Allen Brain Map Atlases:rnaseq/human-mtg-10x_sea-ad
Allen Brain Map:classes/multimodal-characterization
NeMo archive:dat-p3eei0g
Github:AllenInstitute/human_variation
Single Cell Portal
572 cells
Explore
Mus musculus
Mus musculus
Purkinje cell
+2
Purkinje cell
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Purkinje cell
Granule cell
Obsolete inhibitory neuron
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
CELLxGENE
565 cells
•
Klughammer et al., 2024
A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features
Explore
h5ad
Homo sapiens
Homo sapiens
Hepatocyte
+6
Hepatocyte
Liver
Liver
29-year-old stage
29-year-old stage
Breast cancer
Breast cancer
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Hepatocyte
T cell
Monocyte
Malignant cell
Macrophage
Endothelial cell
Fibroblast
Tissue
Liver
Developmental stage
29-year-old stage
Disease
Breast cancer
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
humantumoratlas.org
dbGaP Study:phs002371
CELLxGENE
563 cells
•
Johansen et al., 2023
Interindividual variation in human cortical cell type abundance and expression
Explore
h5ad
Homo sapiens
Homo sapiens
L5 extratelencephalic projecting glutamatergic cortical neuron
L5 extratelencephalic projecting glutamatergic cortical neuron
Neocortex
Neocortex
Adult stage
Adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
L5 extratelencephalic projecting glutamatergic cortical neuron
Tissue
Neocortex
Developmental stage
Adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
knowledge.brain-map.org
Allen Brain Map Atlases:rnaseq/human-mtg-10x_sea-ad
Allen Brain Map:classes/multimodal-characterization
NeMo archive:dat-p3eei0g
Github:AllenInstitute/human_variation
ASAP
534 cells
•
Li et al., 2022
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly
Explore
h5ad
Drosophila melanogaster
Drosophila melanogaster
Adult neuron
+5
Adult neuron
Oenocyte
Oenocyte
Day 5 of adulthood
Day 5 of adulthood
Normal
Normal
Female
+1
Female
Smart-seq2
Smart-seq2
Organism
Drosophila melanogaster
Cell type
Adult neuron
Muscle cell
Adult enterocyte
Epithelial cell
Hemocyte
Adult oenocyte
Tissue
Oenocyte
Developmental stage
Day 5 of adulthood
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
Suspension type
1
2
…
191
192
193
194
195
…
389
390
Close
