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Disease
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Technology
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Cell
934
Nucleus
679
Data Source
0
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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
Sort
Most cells
Fewest cells
2515
datasets
CELLxGENE
3,749 cells
•
Sampath Kumar et al., 2023
Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis
Explore
h5ad
Mus musculus
Mus musculus
Cardiac valve cell
+12
Cardiac valve cell
Embryo
Embryo
Theiler stage 14
Theiler stage 14
Normal
Normal
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Cardiac valve cell
Spinal cord interneuron
Premigratory neural crest cell
Paraxial cell
Neuroplacodal cell
Hemangioblast
Mesodermal cell
Gut endothelial cell
Primitive red blood cell
Splanchnic mesodermal cell
Surface ectodermal cell
Midbrain dopaminergic neuron
Endodermal cell
Tissue
Embryo
Developmental stage
Theiler stage 14
Disease
Normal
Sex
Technology
Slide-seqv2
Suspension type
Related Links
insitubiology.org
GSE197353
figshare.com
figshare.com
figshare.com
CELLxGENE
3,735 cells
•
Almanzar et al., 2020
A single-cell transcriptomic atlas characterizes ageing tissues in the mouse
Explore
h5ad
Mus musculus
Mus musculus
Basal cell of epidermis
+1
Basal cell of epidermis
Tongue
Tongue
3-month-old stage
+2
3-month-old stage
Normal
Normal
Female
+1
Female
Smart-seq2
Smart-seq2
Cell
Cell
Organism
Mus musculus
Cell type
Basal cell of epidermis
Keratinocyte
Tissue
Tongue
Developmental stage
3-month-old stage
20-month-old stage and over
18-month-old stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
Suspension type
Cell
Related Links
GSE132042
Processed files
Tabula Muris Senis
SmartSeq2 for HTP Generation of FACS Sorted Single Cell Libraries V.1
github.com
CELLxGENE
3,726 cells
•
Szabo et al., 2021
Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19
Explore
h5ad
Homo sapiens
Homo sapiens
Neutrophil
+6
Neutrophil
Blood
Blood
66-year-old stage
66-year-old stage
Covid-19
Covid-19
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Neutrophil
Mature nk t cell
Platelet
Myeloid cell
Plasma cell
B cell
Dendritic cell
Tissue
Blood
Developmental stage
66-year-old stage
Disease
Covid-19
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
data.mendeley.com
github.com
covid19cellatlas.org
CELLxGENE
3,699 cells
•
Madissoon et al., 2022
A spatially resolved atlas of the human lung characterizes a gland-associated immune niche
Explore
h5ad
Homo sapiens
Homo sapiens
Iga plasma cell
+4
Iga plasma cell
Bronchus
+4
Bronchus
66-year-old stage
+8
66-year-old stage
Normal
Normal
Female
+1
Female
10x 5' transcription profiling
+2
10x 5' transcription profiling
Nucleus
+1
Nucleus
Organism
Homo sapiens
Cell type
Iga plasma cell
Igg plasma cell
Memory b cell
Plasmablast
Naive b cell
Tissue
Bronchus
Lung
Trachea
Upper lobe of left lung
Lower lobe of left lung
Developmental stage
66-year-old stage
75-year-old stage
Sixth decade stage
29-year-old stage
35-year-old stage
Seventh decade stage
58-year-old stage
59-year-old stage
64-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 5' transcription profiling
10x 3' v3
10x 3' v2
Suspension type
Nucleus
Cell
Related Links
PRJEB52292
explore.data.humancellatlas.org
E-MTAB-11640
S-BIAD570
5locationslung.cellgeni.sanger.ac.uk
CELLxGENE
3,662 cells
•
Wang et al., 2023
Dysregulated lung stroma drives emphysema exacerbation by potentiating resident lymphocytes to suppress an epithelial stem cell reservoir
Explore
h5ad
Homo sapiens
Homo sapiens
Pulmonary alveolar type 2 cell
Pulmonary alveolar type 2 cell
Alveolus of lung
Alveolus of lung
65-year-old stage
+4
65-year-old stage
Pulmonary emphysema
+1
Pulmonary emphysema
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Pulmonary alveolar type 2 cell
Tissue
Alveolus of lung
Developmental stage
65-year-old stage
61-year-old stage
60-year-old stage
63-year-old stage
73-year-old stage
Disease
Pulmonary emphysema
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
GSE196638
explore.data.humancellatlas.org
CELLxGENE
3,648 cells
•
Sampath Kumar et al., 2023
Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis
Explore
h5ad
Mus musculus
Mus musculus
Cardiac valve cell
+15
Cardiac valve cell
Embryo
Embryo
Theiler stage 14
Theiler stage 14
Normal
Normal
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Cardiac valve cell
Spinal cord interneuron
Premigratory neural crest cell
Paraxial cell
Notochordal cell
Neuroplacodal cell
Neurectodermal cell
Hemangioblast
Mesodermal cell
Gut endothelial cell
Primitive red blood cell
Splanchnic mesodermal cell
Surface ectodermal cell
Midbrain dopaminergic neuron
Endodermal cell
Anterior visceral endoderm cell
Tissue
Embryo
Developmental stage
Theiler stage 14
Disease
Normal
Sex
Technology
Slide-seqv2
Suspension type
Related Links
insitubiology.org
GSE197353
figshare.com
figshare.com
figshare.com
CELLxGENE
3,645 cells
•
Chiou et al., 2023
A single-cell multi-omic atlas spanning the adult rhesus macaque brain
Explore
h5ad
Macaca mulatta
Macaca mulatta
Dopaminergic neuron
Dopaminergic neuron
Dorsolateral prefrontal cortex
+26
Dorsolateral prefrontal cortex
Juvenile stage
+1
Juvenile stage
Normal
Normal
Female
+1
Female
Sci-rna-seq3
Sci-rna-seq3
Nucleus
Nucleus
Organism
Macaca mulatta
Cell type
Dopaminergic neuron
Tissue
Dorsolateral prefrontal cortex
Brodmann (1909) area 19
Medial dorsal nucleus of thalamus
Primary visual cortex
Ventral lateral nucleus of thalamus
Inferior temporal gyrus
Medulla oblongata
Prefrontal cortex
Midbrain
Entorhinal cortex
Nucleus accumbens
Cerebrocerebellum
Primary somatosensory cortex
Primary auditory cortex
Primary motor cortex
Inferior parietal cortex
Head of caudate nucleus
Corpus callosum
Hippocampal formation
Perirhinal cortex
Pons
Cerebellar vermis
Anterior cingulate cortex
Superior temporal sulcus
Superior parietal cortex
Lateral geniculate body
Amygdala
Developmental stage
Juvenile stage
Prime adult stage
Disease
Normal
Sex
Female
Male
Technology
Sci-rna-seq3
Suspension type
Nucleus
Related Links
sci-RNA-seq3
assets.nemoarchive.org
sci-RNA-seq3 demultiplexing
sci-RNA-seq3 preprocessing up to count matrix generation
additional analyses
Single Cell Portal
3,616 cells
Explore
Mus musculus
Mus musculus
Retinal ganglion cell
+4
Retinal ganglion cell
Normal
Normal
Mixed sex
Mixed sex
10x 3' v1
10x 3' v1
Organism
Mus musculus
Cell type
Retinal ganglion cell
Retinal cone cell
Glial cell
Precursor cell
Mueller cell
Tissue
Developmental stage
Disease
Normal
Sex
Mixed sex
Technology
10x 3' v1
Suspension type
CELLxGENE
3,596 cells
•
Seeker et al., 2023
Brain matters: unveiling the distinct contributions of region, age, and sex to glia diversity and CNS function
Explore
h5ad
Homo sapiens
Homo sapiens
Ependymal cell
+1
Ependymal cell
Cervical spinal cord white matter
+2
Cervical spinal cord white matter
37-year-old stage
+12
37-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Ependymal cell
Astrocyte
Tissue
Cervical spinal cord white matter
Brodmann (1909) area 4
White matter of cerebellum
Developmental stage
37-year-old stage
34-year-old stage
42-year-old stage
71-year-old stage
61-year-old stage
39-year-old stage
44-year-old stage
72-year-old stage
74-year-old stage
45-year-old stage
63-year-old stage
73-year-old stage
40-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
seeker-science.shinyapps.io
github.com
explore.data.humancellatlas.org
CELLxGENE
3,589 cells
•
Darmanis et al., 2017
Single-Cell RNA-Seq Analysis of Infiltrating Neoplastic Cells at the Migrating Front of Human Glioblastoma
Explore
h5ad
Homo sapiens
Homo sapiens
Oligodendrocyte precursor cell
+6
Oligodendrocyte precursor cell
Cerebral cortex
Cerebral cortex
54-year-old stage
+3
54-year-old stage
Glioblastoma
Glioblastoma
Smart-seq2
Smart-seq2
Cell
Cell
Organism
Homo sapiens
Cell type
Oligodendrocyte precursor cell
Oligodendrocyte
Vascular lymphangioblast
Myeloid cell
Neoplastic cell
Neuron
Astrocyte
Tissue
Cerebral cortex
Developmental stage
54-year-old stage
48-year-old stage
55-year-old stage
60-year-old stage
Disease
Glioblastoma
Sex
Technology
Smart-seq2
Suspension type
Cell
Related Links
cells.ucsc.edu
explore.data.humancellatlas.org
ncbi.nlm.nih.gov
gbmseq.org
ebi.ac.uk
Single Cell Portal
3,583 cells
Explore
Mus musculus
Mus musculus
Obsolete inhibitory neuron
+3
Obsolete inhibitory neuron
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Obsolete inhibitory neuron
Oligodendrocyte precursor cell
Obsolete excitatory neuron
Astrocyte
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD704) (section 107)
CELLxGENE
3,553 cells
•
Sampath Kumar et al., 2023
Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis
Explore
h5ad
Mus musculus
Mus musculus
Cardiac valve cell
+15
Cardiac valve cell
Embryo
Embryo
Theiler stage 14
Theiler stage 14
Normal
Normal
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Cardiac valve cell
Spinal cord interneuron
Premigratory neural crest cell
Paraxial cell
Notochordal cell
Neuroplacodal cell
Neurectodermal cell
Hemangioblast
Mesodermal cell
Gut endothelial cell
Primitive red blood cell
Splanchnic mesodermal cell
Surface ectodermal cell
Midbrain dopaminergic neuron
Endodermal cell
Anterior visceral endoderm cell
Tissue
Embryo
Developmental stage
Theiler stage 14
Disease
Normal
Sex
Technology
Slide-seqv2
Suspension type
Related Links
insitubiology.org
GSE197353
figshare.com
figshare.com
figshare.com
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