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Cell Type
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Tissue
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Developmental Stage
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Disease
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Sex
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Technology
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Cell
934
Nucleus
679
Data Source
0
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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
Sort
Most cells
Fewest cells
2515
datasets
CELLxGENE
3,851 cells
•
Seeker et al., 2023
Brain matters: unveiling the distinct contributions of region, age, and sex to glia diversity and CNS function
Explore
h5ad
Homo sapiens
Homo sapiens
Central nervous system macrophage
+1
Central nervous system macrophage
Cervical spinal cord white matter
+2
Cervical spinal cord white matter
37-year-old stage
+12
37-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Central nervous system macrophage
Microglial cell
Tissue
Cervical spinal cord white matter
Brodmann (1909) area 4
White matter of cerebellum
Developmental stage
37-year-old stage
34-year-old stage
42-year-old stage
71-year-old stage
61-year-old stage
39-year-old stage
44-year-old stage
72-year-old stage
74-year-old stage
45-year-old stage
63-year-old stage
73-year-old stage
40-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
seeker-science.shinyapps.io
github.com
explore.data.humancellatlas.org
Single Cell Portal
3,840 cells
Explore
Mus musculus
Mus musculus
Obsolete inhibitory neuron
+4
Obsolete inhibitory neuron
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Obsolete inhibitory neuron
Oligodendrocyte
Brain microvascular endothelial cell
Obsolete excitatory neuron
Astrocyte
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD720) (section 7)
Corresponding registered brain section (MD720) (section 8)
Corresponding registered brain section (MD720) (section 9)
Corresponding registered brain section (MD721) (section 7)
Corresponding registered brain section (MD721) (section 8)
Corresponding registered brain section (MD721) (section 9)
CELLxGENE
3,834 cells
•
Pelka et al., 2021
Spatially organized multicellular immune hubs in human colorectal cancer
Explore
h5ad
Homo sapiens
Homo sapiens
Mast cell
Mast cell
Colorectum
Colorectum
69-year-old stage
+33
69-year-old stage
Normal
+1
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Mast cell
Tissue
Colorectum
Developmental stage
69-year-old stage
91-year-old stage
42-year-old stage
89-year-old stage
71-year-old stage
53-year-old stage
61-year-old stage
52-year-old stage
56-year-old stage
55-year-old stage
84-year-old stage
82-year-old stage
50-year-old stage
90-year-old stage
51-year-old stage
57-year-old stage
72-year-old stage
81-year-old stage
49-year-old stage
35-year-old stage
58-year-old stage
59-year-old stage
67-year-old stage
77-year-old stage
64-year-old stage
45-year-old stage
62-year-old stage
70-year-old stage
60-year-old stage
78-year-old stage
36-year-old stage
47-year-old stage
76-year-old stage
73-year-old stage
Disease
Normal
Colon adenocarcinoma
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
Broad Institute Single Cell Portal
CRC Immune Hubs
GSE178341
dbGAP
HCA
CELLxGENE
3,834 cells
•
Almanzar et al., 2020
A single-cell transcriptomic atlas characterizes ageing tissues in the mouse
Explore
h5ad
Mus musculus
Mus musculus
Granulocyte
+5
Granulocyte
Spleen
Spleen
3-month-old stage
+2
3-month-old stage
Normal
Normal
Female
+1
Female
Smart-seq2
Smart-seq2
Cell
Cell
Organism
Mus musculus
Cell type
Granulocyte
Natural killer cell
Cd8-positive, alpha-beta t cell
Cd4-positive, alpha-beta t cell
B cell
Proerythroblast
Tissue
Spleen
Developmental stage
3-month-old stage
20-month-old stage and over
18-month-old stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
Suspension type
Cell
Related Links
GSE132042
Processed files
Tabula Muris Senis
SmartSeq2 for HTP Generation of FACS Sorted Single Cell Libraries V.1
github.com
CELLxGENE
3,831 cells
•
Article
Explore
h5ad
Mus musculus
Mus musculus
T cell
+21
T cell
Ovary
Ovary
12-month-old stage
12-month-old stage
Normal
Normal
Female
Female
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
T cell
Granulosa cell
Blood vessel endothelial cell
Stromal cell
Endothelial cell of lymphatic vessel
Cumulus granulosa cell
Mast cell
Smooth muscle cell
Steroidogenic stromal cell of ovary
Endothelial cell of vascular tree
Ovarian surface epithelial cell
Adipocyte
Macrophage
Oviduct secretory cell
Oocyte
Late luteal cell
Atretic granulosa cell
Early luteal cell
Theca cell
Dendritic cell
Ovarian fibroblast
Mural granulosa cell
Tissue
Ovary
Developmental stage
12-month-old stage
Disease
Normal
Sex
Female
Technology
Slide-seqv2
Suspension type
CELLxGENE
3,824 cells
•
Sampath Kumar et al., 2023
Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis
Explore
h5ad
Mus musculus
Mus musculus
Cardiac valve cell
+11
Cardiac valve cell
Embryo
Embryo
Theiler stage 14
Theiler stage 14
Normal
Normal
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Cardiac valve cell
Spinal cord interneuron
Premigratory neural crest cell
Neuroplacodal cell
Neurectodermal cell
Hemangioblast
Mesodermal cell
Gut endothelial cell
Primitive red blood cell
Surface ectodermal cell
Midbrain dopaminergic neuron
Endodermal cell
Tissue
Embryo
Developmental stage
Theiler stage 14
Disease
Normal
Sex
Technology
Slide-seqv2
Suspension type
Related Links
insitubiology.org
GSE197353
figshare.com
figshare.com
figshare.com
CELLxGENE
3,799 cells
•
Litviňuková et al., 2020
Cells of the adult human heart
Explore
h5ad
Homo sapiens
Homo sapiens
Epicardial adipocyte
Epicardial adipocyte
Heart right ventricle
+5
Heart right ventricle
Sixth decade stage
+3
Sixth decade stage
Normal
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Epicardial adipocyte
Tissue
Heart right ventricle
Right cardiac atrium
Apex of heart
Heart left ventricle
Left cardiac atrium
Interventricular septum
Developmental stage
Sixth decade stage
Fifth decade stage
Seventh decade stage
Eighth decade stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Nucleus
Related Links
cells.ucsc.edu
ERP123138
support.10xgenomics.com
explore.data.humancellatlas.org
genome.ucsc.edu
teichlab.org
github.com
heartcellatlas.org
CELLxGENE
3,799 cells
•
Leng et al., 2021
Molecular characterization of selectively vulnerable neurons in Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Mature microglial cell
Mature microglial cell
Superior frontal gyrus
Superior frontal gyrus
87-year-old stage
+7
87-year-old stage
Normal
+1
Normal
Male
Male
10x 3' v2
10x 3' v2
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Mature microglial cell
Tissue
Superior frontal gyrus
Developmental stage
87-year-old stage
71-year-old stage
82-year-old stage
50-year-old stage
72-year-old stage
80 year-old and over stage
77-year-old stage
60-year-old stage
Disease
Normal
Alzheimer disease
Sex
Male
Technology
10x 3' v2
Suspension type
Nucleus
Related Links
GSE147528
kampmannlab.ucsf.edu
Synapse
explore.data.humancellatlas.org
CELLxGENE
3,797 cells
•
Wang et al., 2019
Single-cell transcriptome analysis reveals differential nutrient absorption functions in human intestine
Explore
h5ad
Homo sapiens
Homo sapiens
Stem cell
+6
Stem cell
Epithelium of rectum
Epithelium of rectum
66-year-old stage
+1
66-year-old stage
Normal
Normal
Female
Female
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Stem cell
Transit amplifying cell of colon
Paneth cell of colon
Colon goblet cell
Progenitor cell
Colonocyte
Enteroendocrine cell of colon
Tissue
Epithelium of rectum
Developmental stage
66-year-old stage
50-year-old stage
Disease
Normal
Sex
Female
Technology
10x 3' v2
Suspension type
Cell
Related Links
ebi.ac.uk
cells.ucsc.edu
GSE125970
CELLxGENE
3,764 cells
•
Isola et al., 2024
A single-cell atlas of the aging mouse ovary
Explore
h5ad
Mus musculus
Mus musculus
Granulosa cell
+2
Granulosa cell
Ovary
Ovary
3-month-old stage
+1
3-month-old stage
Normal
Normal
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Mus musculus
Cell type
Granulosa cell
Luteal cell
Oocyte
Tissue
Ovary
Developmental stage
3-month-old stage
9-month-old stage
Disease
Normal
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
GSE232309
github.com
omrf.shinyapps.io
CELLxGENE
3,760 cells
•
Sampath Kumar et al., 2023
Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis
Explore
h5ad
Mus musculus
Mus musculus
Cardiac valve cell
+15
Cardiac valve cell
Embryo
Embryo
Theiler stage 14
Theiler stage 14
Normal
Normal
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Cardiac valve cell
Spinal cord interneuron
Premigratory neural crest cell
Paraxial cell
Notochordal cell
Neuroplacodal cell
Neurectodermal cell
Hemangioblast
Mesodermal cell
Gut endothelial cell
Primitive red blood cell
Splanchnic mesodermal cell
Surface ectodermal cell
Midbrain dopaminergic neuron
Endodermal cell
Anterior visceral endoderm cell
Tissue
Embryo
Developmental stage
Theiler stage 14
Disease
Normal
Sex
Technology
Slide-seqv2
Suspension type
Related Links
insitubiology.org
GSE197353
figshare.com
figshare.com
figshare.com
CELLxGENE
3,755 cells
•
Almanzar et al., 2020
A single-cell transcriptomic atlas characterizes ageing tissues in the mouse
Explore
h5ad
Mus musculus
Mus musculus
T cell
+8
T cell
Subcutaneous adipose tissue
Subcutaneous adipose tissue
3-month-old stage
+2
3-month-old stage
Normal
Normal
Female
+1
Female
Smart-seq2
Smart-seq2
Cell
Cell
Organism
Mus musculus
Cell type
T cell
Natural killer cell
Endothelial cell
Cd8-positive, alpha-beta t cell
Epithelial cell
Myeloid cell
Cd4-positive, alpha-beta t cell
Mesenchymal stem cell of adipose tissue
B cell
Tissue
Subcutaneous adipose tissue
Developmental stage
3-month-old stage
20-month-old stage and over
18-month-old stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
Suspension type
Cell
Related Links
GSE132042
Processed files
Tabula Muris Senis
SmartSeq2 for HTP Generation of FACS Sorted Single Cell Libraries V.1
github.com
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