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Cell Type
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Tissue
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Developmental Stage
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Disease
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Sex
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Technology
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Cell
893
Nucleus
659
Data Source
0
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Asap
43
Bgee
40
Cellxgene
2,077
Single cell portal
179
Sort
Most cells
Fewest cells
2339
datasets
Single Cell Portal
879 cells
Explore
Mus musculus
Mus musculus
Purkinje cell
+1
Purkinje cell
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Purkinje cell
Granule cell
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
CELLxGENE
873 cells
•
Braun et al., 2023
Comprehensive cell atlas of the first-trimester developing human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Neuroplacodal cell
Neuroplacodal cell
Cerebellum
+5
Cerebellum
10th week post-fertilization stage
+4
10th week post-fertilization stage
Normal
Normal
10x 3' v2
+1
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Neuroplacodal cell
Tissue
Cerebellum
Hindbrain
Midbrain
Forebrain
Head
Medulla oblongata
Developmental stage
10th week post-fertilization stage
9th week post-fertilization stage
Carnegie stage 15
Carnegie stage 20
Carnegie stage 16
Disease
Normal
Sex
Technology
10x 3' v2
10x 3' v3
Suspension type
Cell
Related Links
EGA dataset:EGAD00001006049
Github:linnarsson-lab/developing-human-brain?tab=readme-ov-file
CELLxGENE
871 cells
•
Braun et al., 2023
Comprehensive cell atlas of the first-trimester developing human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Neural crest cell
Neural crest cell
Cerebellum
+14
Cerebellum
10th week post-fertilization stage
+8
10th week post-fertilization stage
Normal
Normal
10x 3' v2
+1
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Neural crest cell
Tissue
Cerebellum
Hindbrain
Midbrain
Pons
Forebrain
Head
Lower layers of the cortex
Hypothalamus
Striatum
Metencephalon
Basal forebrain
Cerebral subcortex
Medulla oblongata
Cortex
Cerebellar peduncular complex
Developmental stage
10th week post-fertilization stage
14th week post-fertilization stage
9th week post-fertilization stage
Carnegie stage 15
Carnegie stage 20
Carnegie stage 16
15th week post-fertilization stage
13th week post-fertilization stage
12th week post-fertilization stage
Disease
Normal
Sex
Technology
10x 3' v2
10x 3' v3
Suspension type
Cell
Related Links
EGA dataset:EGAD00001006049
Github:linnarsson-lab/developing-human-brain?tab=readme-ov-file
Single Cell Portal
844 cells
Explore
Mus musculus
Mus musculus
Astrocyte
+3
Astrocyte
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Astrocyte
Obsolete excitatory neuron
Oligodendrocyte precursor cell
Obsolete inhibitory neuron
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD699) (section 368)
CELLxGENE
843 cells
•
Yayon et al., 2024
A spatial human thymus cell atlas mapped to a continuous tissue axis
Explore
h5ad
Homo sapiens
Homo sapiens
Common myeloid progenitor
+6
Common myeloid progenitor
Thymus
Thymus
14th week post-fertilization stage
+11
14th week post-fertilization stage
Normal
Normal
Female
+1
Female
10x 5' v2
+3
10x 5' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Common myeloid progenitor
Neutrophil
Monocyte
Granulocyte monocyte progenitor cell
Erythrocyte
Promonocyte
Myelocyte
Tissue
Thymus
Developmental stage
14th week post-fertilization stage
14-month-old stage
15th week post-fertilization stage
6-month-old stage
20th week post-fertilization stage
24th week post-fertilization stage
13th week post-fertilization stage
12th week post-fertilization stage
18th week post-fertilization stage
17th week post-fertilization stage
3-month-old stage
Newborn stage (0-28 days)
Disease
Normal
Sex
Female
Male
Technology
10x 5' v2
10x 3' v2
10x 5' v1
10x 3' v3
Suspension type
Cell
Related Links
Bioimage Archive:S-BIAD1257
ENA Project:PRJEB77091
EGA dataset:EGAD00001015384
ebi.ac.uk
GEO series:GSE271304
ccgg.ugent.be
Github:Teichlab/TissueTag
Github:Teichlab/thymus_spatial_atlas/tree/main
GEO series:GSE206710
CELLxGENE
810 cells
•
Szabo et al., 2021
Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19
Explore
h5ad
Homo sapiens
Homo sapiens
B cell
+6
B cell
Respiratory airway
Respiratory airway
74-year-old stage
74-year-old stage
Covid-19
Covid-19
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
B cell
Neutrophil
Mature nk t cell
Erythrocyte
Ionocyte
Epithelial cell
Myeloid cell
Tissue
Respiratory airway
Developmental stage
74-year-old stage
Disease
Covid-19
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
Mendeley Data Dataset:fm7v43jrbk/2
Github:simslab/cluster_diffex2018
COVID-19 cell atlas
Single Cell Portal
805 cells
Explore
Mus musculus
Mus musculus
Astrocyte
+2
Astrocyte
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Astrocyte
Obsolete excitatory neuron
Brain microvascular endothelial cell
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD711) (section 133)
Corresponding registered brain section (MD711) (section 134)
Corresponding registered brain section (MD711) (section 135)
Corresponding registered brain section (MD711) (section 136)
Corresponding registered brain section (MD711) (section 137)
Corresponding registered brain section (MD711) (section 138)
CELLxGENE
796 cells
•
Duclos et al., 2019
Characterizing smoking-induced transcriptional heterogeneity in the human bronchial epithelium at single-cell resolution
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+8
T cell
Epithelium of main bronchus
Epithelium of main bronchus
43-year-old stage
+10
43-year-old stage
Normal
Normal
Female
+1
Female
Cel-seq
Cel-seq
Cell
Cell
Organism
Homo sapiens
Cell type
T cell
Club cell
Basal cell of epithelium of bronchus
Pulmonary ionocyte
Lung secretory cell
Respiratory tract epithelial cell
Bronchial goblet cell
Multiciliated epithelial cell of the bronchus
Deuterosomal cell
Tissue
Epithelium of main bronchus
Developmental stage
43-year-old stage
49-year-old stage
34-year-old stage
25-year-old stage
24-year-old stage
35-year-old stage
26-year-old stage
27-year-old stage
44-year-old stage
50-year-old stage
51-year-old stage
Disease
Normal
Sex
Female
Male
Technology
Cel-seq
Suspension type
Cell
Related Links
GEO series:GSE131391
Single Cell Portal
779 cells
Explore
Mus musculus
Mus musculus
Oligodendrocyte
+2
Oligodendrocyte
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Oligodendrocyte
Obsolete excitatory neuron
Obsolete inhibitory neuron
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD710) (section 121)
Corresponding registered brain section (MD710) (section 122)
Corresponding registered brain section (MD710) (section 123)
Corresponding registered brain section (MD710) (section 124)
Corresponding registered brain section (MD710) (section 125)
Corresponding registered brain section (MD710) (section 126)
Single Cell Portal
745 cells
Explore
Mus musculus
Mus musculus
Oligodendrocyte
+4
Oligodendrocyte
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Oligodendrocyte
Oligodendrocyte precursor cell
Brain microvascular endothelial cell
Obsolete inhibitory neuron
Astrocyte of the cerebellum
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD711) (section 277)
Corresponding registered brain section (MD711) (section 278)
Single Cell Portal
713 cells
Explore
Mus musculus
Mus musculus
Astrocyte
+2
Astrocyte
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Astrocyte
Obsolete excitatory neuron
Obsolete inhibitory neuron
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
CELLxGENE
706 cells
•
Apostolov et al., 2024
Profiling of epithelial functional states and fibroblast phenotypes in hormone therapy-naïve localised prostate cancer
Explore
h5ad
Homo sapiens
Homo sapiens
B cell
B cell
Prostate gland
Prostate gland
62-year-old stage
+14
62-year-old stage
Prostatic acinar adenocarcinoma
Prostatic acinar adenocarcinoma
Male
Male
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
B cell
Tissue
Prostate gland
Developmental stage
62-year-old stage
54-year-old stage
59-year-old stage
64-year-old stage
46-year-old stage
68-year-old stage
60-year-old stage
75-year-old stage
63-year-old stage
61-year-old stage
72-year-old stage
45-year-old stage
69-year-old stage
70-year-old stage
71-year-old stage
Disease
Prostatic acinar adenocarcinoma
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
GEO series:GSE145843
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