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Cell Type
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Technology
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Cell
893
Nucleus
659
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0
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Asap
43
Bgee
40
Cellxgene
2,077
Single cell portal
179
Sort
Most cells
Fewest cells
2339
datasets
Single Cell Portal
526 cells
Explore
Mus musculus
Mus musculus
Oligodendrocyte
+2
Oligodendrocyte
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Oligodendrocyte
Astrocyte
Brain microvascular endothelial cell
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD710) (section 277)
Corresponding registered brain section (MD710) (section 278)
CELLxGENE
499 cells
•
Sampath Kumar et al., 2023
Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis
Explore
h5ad
Mus musculus
Mus musculus
Spinal cord interneuron
+1
Spinal cord interneuron
Embryo
Embryo
Theiler stage 14
Theiler stage 14
Normal
Normal
Female
Female
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Spinal cord interneuron
Paraxial cell
Tissue
Embryo
Developmental stage
Theiler stage 14
Disease
Normal
Sex
Female
Technology
Slide-seqv2
Suspension type
Related Links
Chen Lab
GEO series:GSE197353
figshare.com
FigShare Dataset:E8_5_Embryo2_h5ad/21695849/1
FigShare Dataset:E9_0_Embryo_h5ad/21695879/1
ASAP
494 cells
•
Li et al., 2022
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly
Explore
h5ad
Drosophila melanogaster
Drosophila melanogaster
Adult malpighian tubule stellate cell of main segment
+6
Adult malpighian tubule stellate cell of main segment
Malpighian tubule
Malpighian tubule
Day 5 of adulthood
Day 5 of adulthood
Normal
Normal
Female
+1
Female
Smart-seq2
Smart-seq2
Organism
Drosophila melanogaster
Cell type
Adult malpighian tubule stellate cell of main segment
Adult malpighian tubule bar-shaped cell of initial segment
Adult malpighian tubule principal cell
Adult malpighian tubule principal cell of lower segment
Adult renal stem cell
Adult malpighian tubule principal cell of initial segment
Adult malpighian tubule principal cell of lower ureter
Tissue
Malpighian tubule
Developmental stage
Day 5 of adulthood
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
Suspension type
CELLxGENE
489 cells
•
de Morree et al., 2025
A molecular cell atlas of mouse lemur, an emerging model primate
Explore
h5ad
Microcebus murinus
Microcebus murinus
Plasmacytoid dendritic cell
+14
Plasmacytoid dendritic cell
Trachea
Trachea
Post-juvenile adult stage
Post-juvenile adult stage
Normal
Normal
Female
+1
Female
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Microcebus murinus
Cell type
Plasmacytoid dendritic cell
T cell
Ciliated cell
Brush cell of trachea
Endothelial cell of lymphatic vessel
Neutrophil
Secretory cell
Lymphocyte
Neuroendocrine cell
Vascular associated smooth muscle cell
Endothelial cell
Chondrocyte
Fibroblast
Basal cell of epithelium of trachea
Myeloid cell
Tissue
Trachea
Developmental stage
Post-juvenile adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v2
Suspension type
Cell
Related Links
tabula-microcebus.sf.czbiohub.org
UCSC Cell Browser:tabula-microcebus
app.globus.org
Single Cell Portal
467 cells
Explore
Mus musculus
Mus musculus
Purkinje cell
+1
Purkinje cell
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Purkinje cell
Granule cell
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
ASAP
464 cells
•
Li et al., 2022
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly
Explore
h5ad
Drosophila melanogaster
Drosophila melanogaster
Crystal cell
+5
Crystal cell
Heart
Heart
Day 5 of adulthood
Day 5 of adulthood
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Organism
Drosophila melanogaster
Cell type
Crystal cell
Adult abdominal pericardial cell
Muscle cell
Epithelial cell
Hemocyte
Adult oenocyte
Tissue
Heart
Developmental stage
Day 5 of adulthood
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
CELLxGENE
395 cells
•
Orozco et al., 2020
Integration of eQTL and a Single-Cell Atlas in the Human Eye Identifies Causal Genes for Age-Related Macular Degeneration
Explore
h5ad
Homo sapiens
Homo sapiens
Myeloid cell
Myeloid cell
Retina
Retina
77-year-old stage
+3
77-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Myeloid cell
Tissue
Retina
Developmental stage
77-year-old stage
79-year-old stage
65-year-old stage
70-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
GEO series:GSE135133
BroadInstitute Single-Cell Portal:SCP484/nucseq-from-human-control-eyes-scrnaseq
HumanCellAtlas:e090445c-6971-4212-bc5f-ae4ec3914102
CELLxGENE
385 cells
•
Berg et al., 2021
Human neocortical expansion involves glutamatergic neuron diversification
Explore
h5ad
Homo sapiens
Homo sapiens
Glutamatergic neuron
Glutamatergic neuron
Parietal cortex
+3
Parietal cortex
38-year-old stage
+42
38-year-old stage
Epilepsy
+3
Epilepsy
Female
+1
Female
Patch-seq
Patch-seq
Cell
Cell
Organism
Homo sapiens
Cell type
Glutamatergic neuron
Tissue
Parietal cortex
Frontal cortex
Occipital cortex
Temporal cortex
Developmental stage
38-year-old stage
32-year-old stage
66-year-old stage
31-year-old stage
49-year-old stage
21-year-old stage
34-year-old stage
42-year-old stage
18-year-old stage
59-year-old stage
19-year-old stage
25-year-old stage
46-year-old stage
68-year-old stage
24-year-old stage
55-year-old stage
57-year-old stage
28-year-old stage
33-year-old stage
60-year-old stage
35-year-old stage
63-year-old stage
61-year-old stage
48-year-old stage
27-year-old stage
36-year-old stage
72-year-old stage
67-year-old stage
47-year-old stage
52-year-old stage
44-year-old stage
58-year-old stage
22-year-old stage
65-year-old stage
23-year-old stage
20-year-old stage
50-year-old stage
45-year-old stage
69-year-old stage
73-year-old stage
51-year-old stage
40-year-old stage
41-year-old stage
Disease
Epilepsy
Hydrocephalus
Brain neoplasm
Encephalomyelitis
Sex
Female
Male
Technology
Patch-seq
Suspension type
Cell
Related Links
Github:alleninstitute/mies
portal.brain-map.org
Github:AllenInstitute/patchseq_human_L23
CELLxGENE
363 cells
•
King et al., 2021
Single-cell analysis of human B cell maturation predicts how antibody class switching shapes selection dynamics
Explore
h5ad
Homo sapiens
Homo sapiens
Plasmacytoid dendritic cell
+4
Plasmacytoid dendritic cell
Tonsil
Tonsil
3-year-old stage
+3
3-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v2
+1
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Plasmacytoid dendritic cell
Conventional dendritic cell
Macrophage
Follicular dendritic cell
Myeloid cell
Tissue
Tonsil
Developmental stage
3-year-old stage
5-year-old stage
6-year-old stage
9-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v2
10x 5' v1
Suspension type
Cell
Related Links
HumanCellAtlas:24d0dbbc-54eb-4904-8141-934d26f1c936
tonsilimmune.org
ArrayExpress BioStudies:E-MTAB-8999
ArrayExpress BioStudies:E-MTAB-9005
ArrayExpress BioStudies:E-MTAB-9003
Single Cell Portal
343 cells
Explore
Homo sapiens
Homo sapiens
T cell
T cell
Hiv infectious disease
Hiv infectious disease
Smart-seq2
Smart-seq2
Organism
Homo sapiens
Cell type
T cell
Tissue
Developmental stage
Disease
Hiv infectious disease
Sex
Technology
Smart-seq2
Suspension type
CELLxGENE
301 cells
•
Johansen et al., 2023
Interindividual variation in human cortical cell type abundance and expression
Explore
h5ad
Homo sapiens
Homo sapiens
Sst gabaergic interneuron
Sst gabaergic interneuron
Neocortex
Neocortex
Adult stage
Adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Sst gabaergic interneuron
Tissue
Neocortex
Developmental stage
Adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
knowledge.brain-map.org
Allen Brain Map:classes/multimodal-characterization
NeMo archive:dat-p3eei0g
Github:AllenInstitute/human_variation
Allen Brain Map Atlases:rnaseq/human-mtg-10x_sea-ad
CELLxGENE
268 cells
•
Apostolov et al., 2024
Profiling of epithelial functional states and fibroblast phenotypes in hormone therapy-naïve localised prostate cancer
Explore
h5ad
Homo sapiens
Homo sapiens
Club-like cell of the urethral epithelium
+4
Club-like cell of the urethral epithelium
Prostate gland
Prostate gland
62-year-old stage
+13
62-year-old stage
Prostatic acinar adenocarcinoma
Prostatic acinar adenocarcinoma
Male
Male
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Club-like cell of the urethral epithelium
T cell
Basal cell of prostate epithelium
Luminal cell of prostate epithelium
Myeloid cell
Tissue
Prostate gland
Developmental stage
62-year-old stage
54-year-old stage
64-year-old stage
46-year-old stage
68-year-old stage
60-year-old stage
75-year-old stage
63-year-old stage
61-year-old stage
72-year-old stage
45-year-old stage
69-year-old stage
70-year-old stage
71-year-old stage
Disease
Prostatic acinar adenocarcinoma
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
GEO series:GSE145843
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