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Tissue
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Disease
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Technology
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Cell
893
Nucleus
659
Data Source
0
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Asap
43
Bgee
40
Cellxgene
2,077
Single cell portal
179
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Most cells
Fewest cells
2339
datasets
ASAP
263 cells
•
Li et al., 2022
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly
Explore
h5ad
Drosophila melanogaster
Drosophila melanogaster
Adult glial cell
+3
Adult glial cell
Haltere
Haltere
Day 5 of adulthood
Day 5 of adulthood
Normal
Normal
Female
+1
Female
Smart-seq2
Smart-seq2
Organism
Drosophila melanogaster
Cell type
Adult glial cell
Muscle cell
Epithelial cell
Hemocyte
Tissue
Haltere
Developmental stage
Day 5 of adulthood
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
Suspension type
CELLxGENE
231 cells
•
de Morree et al., 2025
A molecular cell atlas of mouse lemur, an emerging model primate
Explore
h5ad
Microcebus murinus
Microcebus murinus
Erythroid lineage cell
+12
Erythroid lineage cell
Diaphragm
Diaphragm
Post-juvenile adult stage
Post-juvenile adult stage
Normal
Normal
Female
+1
Female
10x 3' v2
+1
10x 3' v2
Cell
Cell
Organism
Microcebus murinus
Cell type
Erythroid lineage cell
Pericyte
Endothelial cell of lymphatic vessel
Neutrophil
Lymphocyte
Macrophage
Tendon cell
Mesenchymal stem cell
Capillary endothelial cell
Fast muscle cell
Basophil
Vein endothelial cell
Skeletal muscle satellite stem cell
Tissue
Diaphragm
Developmental stage
Post-juvenile adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v2
Smart-seq2
Suspension type
Cell
Related Links
tabula-microcebus.sf.czbiohub.org
UCSC Cell Browser:tabula-microcebus
app.globus.org
Single Cell Portal
206 cells
Explore
Mus musculus
Mus musculus
Neuron of the dorsal spinal cord
Neuron of the dorsal spinal cord
Neuropathy, painful
+1
Neuropathy, painful
Smart-seq2
Smart-seq2
Organism
Mus musculus
Cell type
Neuron of the dorsal spinal cord
Tissue
Developmental stage
Disease
Neuropathy, painful
Normal
Sex
Technology
Smart-seq2
Suspension type
CELLxGENE
146 cells
•
Andrews et al., 2021
Single‐Cell, Single‐Nucleus, and Spatial RNA Sequencing of the Human Liver Identifies Cholangiocyte and Mesenchymal Heterogeneity
Explore
h5ad
Homo sapiens
Homo sapiens
Mature b cell
+1
Mature b cell
Caudate lobe of liver
Caudate lobe of liver
Young adult stage
+1
Young adult stage
Normal
Normal
Female
+1
Female
10x 3' v2
+1
10x 3' v2
Cell
+1
Cell
Organism
Homo sapiens
Cell type
Mature b cell
Plasma cell
Tissue
Caudate lobe of liver
Developmental stage
Young adult stage
Prime adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v2
10x 3' v3
Suspension type
Cell
Nucleus
Related Links
Github:tallulandrews/Liver_sc_sn_paper_scripts
GEO series:GSE185477
protocols.io:human-liver-caudate-lobe-dissociation-for-scrna-se-q26g77j1gwz1/v2
macparlandlab.shinyapps.io
HumanCellAtlas:8a666b76-daaf-4b1f-9414-e4807a1d1e8b
Bgee
118 cells
•
Deng et al., 2014
Single-Cell RNA-Seq Reveals Dynamic, Random Monoallelic Gene Expression in Mammalian Cells
Explore
scRNA-Seq full-length processed expression values per cell population in Mus musculus (tsv.gz)
scRNA-Seq full-length H5AD data per cell in Mus musculus (h5ad)
Mus musculus
Mus musculus
Embryonic cell (metazoa)
+1
Embryonic cell (metazoa)
Blastocyst
+1
Blastocyst
Theiler stage 05
+1
Theiler stage 05
Normal
Normal
Male
Male
Smart-seq2
Smart-seq2
Organism
Mus musculus
Cell type
Embryonic cell (metazoa)
Blastoderm cell
Tissue
Blastocyst
Morula
Developmental stage
Theiler stage 05
Theiler stage 03
Disease
Normal
Sex
Male
Technology
Smart-seq2
Suspension type
Related Links
SRA Project:SRP020490
CELLxGENE
111 cells
•
de Morree et al., 2025
A molecular cell atlas of mouse lemur, an emerging model primate
Explore
h5ad
Microcebus murinus
Microcebus murinus
Endothelial cell of lymphatic vessel
+7
Endothelial cell of lymphatic vessel
Aorta
Aorta
Post-juvenile adult stage
Post-juvenile adult stage
Normal
Normal
Female
Female
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Microcebus murinus
Cell type
Endothelial cell of lymphatic vessel
Neutrophil
Cd8-positive, alpha-beta t cell
Vascular associated smooth muscle cell
Adipocyte
Endothelial cell
Fibroblast
Myeloid cell
Tissue
Aorta
Developmental stage
Post-juvenile adult stage
Disease
Normal
Sex
Female
Technology
10x 3' v2
Suspension type
Cell
Related Links
tabula-microcebus.sf.czbiohub.org
UCSC Cell Browser:tabula-microcebus
app.globus.org
Bgee
101 cells
•
Guo et al., 2017
Chromatin and Single-Cell RNA-Seq Profiling Reveal Dynamic Signaling and Metabolic Transitions during Human Spermatogonial Stem Cell Development
Explore
scRNA-Seq full-length processed expression values per cell population in Homo sapiens (tsv.gz)
scRNA-Seq full-length H5AD data per cell in Homo sapiens (h5ad)
Homo sapiens
Homo sapiens
Obsolete male germ line stem cell (sensu vertebrata)
Obsolete male germ line stem cell (sensu vertebrata)
Testis
Testis
Life cycle
Life cycle
Normal
Normal
Male
Male
Smart-seq2
Smart-seq2
Organism
Homo sapiens
Cell type
Obsolete male germ line stem cell (sensu vertebrata)
Tissue
Testis
Developmental stage
Life cycle
Disease
Normal
Sex
Male
Technology
Smart-seq2
Suspension type
Related Links
SRA Project:SRP094958
Single Cell Portal
88 cells
Explore
Homo sapiens
Homo sapiens
Embryonic cell (metazoa)
Embryonic cell (metazoa)
Normal
Normal
Smart-seq2
Smart-seq2
Organism
Homo sapiens
Cell type
Embryonic cell (metazoa)
Tissue
Developmental stage
Disease
Normal
Sex
Technology
Smart-seq2
Suspension type
CELLxGENE
66 cells
•
de Morree et al., 2025
A molecular cell atlas of mouse lemur, an emerging model primate
Explore
h5ad
Microcebus murinus
Microcebus murinus
Endothelial cell of artery
+8
Endothelial cell of artery
Thymus
Thymus
Post-juvenile adult stage
Post-juvenile adult stage
Normal
Normal
Male
Male
Smart-seq2
Smart-seq2
Cell
Cell
Organism
Microcebus murinus
Cell type
Endothelial cell of artery
Endothelial cell of lymphatic vessel
Neutrophil
Lymphocyte
Macrophage
Adipocyte
Capillary endothelial cell
Fibroblast
Mesothelial cell
Tissue
Thymus
Developmental stage
Post-juvenile adult stage
Disease
Normal
Sex
Male
Technology
Smart-seq2
Suspension type
Cell
Related Links
tabula-microcebus.sf.czbiohub.org
UCSC Cell Browser:tabula-microcebus
app.globus.org
Bgee
57 cells
•
Guo et al., 2015
The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ Cells
Explore
scRNA-Seq full-length processed expression values per cell population in Homo sapiens (tsv.gz)
scRNA-Seq full-length H5AD data per cell in Homo sapiens (h5ad)
Homo sapiens
Homo sapiens
Primordial germ cell
Primordial germ cell
Gonad
Gonad
18th week post-fertilization stage
18th week post-fertilization stage
Normal
Normal
Male
Male
Smart-seq2
Smart-seq2
Organism
Homo sapiens
Cell type
Primordial germ cell
Tissue
Gonad
Developmental stage
18th week post-fertilization stage
Disease
Normal
Sex
Male
Technology
Smart-seq2
Suspension type
Related Links
SRA Project:SRP050499
Single Cell Portal
30 cells
Explore
Mus musculus
+1
Mus musculus
T cell
+5
T cell
Lymphoma
+1
Lymphoma
10x 3' v2
10x 3' v2
Organism
Mus musculus
Homo sapiens
Cell type
T cell
Monocyte
Macrophage
Cd8-positive, alpha-beta t cell
Granulocyte
Plasma cell
Tissue
Developmental stage
Disease
Lymphoma
Normal
Sex
Technology
10x 3' v2
Suspension type
1
2
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