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Disease
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Technology
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Cell
893
Nucleus
659
Data Source
0
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Asap
43
Bgee
40
Cellxgene
2,077
Single cell portal
179
Sort
Most cells
Fewest cells
2339
datasets
CELLxGENE
1,096 cells
•
Apostolov et al., 2024
Profiling of epithelial functional states and fibroblast phenotypes in hormone therapy-naïve localised prostate cancer
Explore
h5ad
Homo sapiens
Homo sapiens
Glial cell
+1
Glial cell
Prostate gland
Prostate gland
62-year-old stage
+14
62-year-old stage
Prostatic acinar adenocarcinoma
Prostatic acinar adenocarcinoma
Male
Male
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Glial cell
Myelinating schwann cell
Tissue
Prostate gland
Developmental stage
62-year-old stage
54-year-old stage
59-year-old stage
64-year-old stage
46-year-old stage
68-year-old stage
60-year-old stage
75-year-old stage
63-year-old stage
61-year-old stage
72-year-old stage
45-year-old stage
69-year-old stage
70-year-old stage
71-year-old stage
Disease
Prostatic acinar adenocarcinoma
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
GEO series:GSE145843
Single Cell Portal
1,092 cells
•
Ziegler et al., 2020
SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues
Explore
Macaca fascicularis
Macaca fascicularis
Pulmonary alveolar type 2 cell
+3
Pulmonary alveolar type 2 cell
Tuberculosis
Tuberculosis
Seq-well
Seq-well
Organism
Macaca fascicularis
Cell type
Pulmonary alveolar type 2 cell
Secretory cell
Pulmonary alveolar type 1 cell
Ciliated epithelial cell
Tissue
Developmental stage
Disease
Tuberculosis
Sex
Technology
Seq-well
Suspension type
Related Links
cellxgene.cziscience.com
CELLxGENE
1,074 cells
•
Szabo et al., 2021
Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19
Explore
h5ad
Homo sapiens
Homo sapiens
B cell
+6
B cell
Respiratory airway
Respiratory airway
82-year-old stage
82-year-old stage
Covid-19
Covid-19
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
B cell
Neutrophil
Mature nk t cell
Erythrocyte
Epithelial cell
Mast cell
Myeloid cell
Tissue
Respiratory airway
Developmental stage
82-year-old stage
Disease
Covid-19
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
Mendeley Data Dataset:fm7v43jrbk/2
COVID-19 cell atlas
Github:simslab/cluster_diffex2018
CELLxGENE
1,062 cells
•
de Morree et al., 2025
A molecular cell atlas of mouse lemur, an emerging model primate
Explore
h5ad
Microcebus murinus
Microcebus murinus
Off-bipolar cell
+10
Off-bipolar cell
Retina
Retina
Post-juvenile adult stage
Post-juvenile adult stage
Normal
Normal
Male
Male
10x 3' v2
+1
10x 3' v2
Cell
Cell
Organism
Microcebus murinus
Cell type
Off-bipolar cell
Erythroid lineage cell
Retinal bipolar neuron
Retinal cone cell
Neutrophil
Non-myelinating schwann cell
Macrophage
Mueller cell
Retina horizontal cell
On-bipolar cell
Retinal rod cell
Tissue
Retina
Developmental stage
Post-juvenile adult stage
Disease
Normal
Sex
Male
Technology
10x 3' v2
Smart-seq2
Suspension type
Cell
Related Links
tabula-microcebus.sf.czbiohub.org
UCSC Cell Browser:tabula-microcebus
app.globus.org
CELLxGENE
1,011 cells
•
Andrews et al., 2024
Single-cell, single-nucleus, and spatial transcriptomics characterization of the immunological landscape in the healthy and PSC human liver
Explore
h5ad
Homo sapiens
Homo sapiens
Intrahepatic cholangiocyte
Intrahepatic cholangiocyte
Caudate lobe of liver
Caudate lobe of liver
Young adult stage
+2
Young adult stage
Normal
Normal
Female
+1
Female
10x 3' v2
+1
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Intrahepatic cholangiocyte
Tissue
Caudate lobe of liver
Developmental stage
Young adult stage
Prime adult stage
Late adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v2
10x 5' v1
Suspension type
Cell
Related Links
nature.com
GEO series:GSE240429
GEO series:GSE115469
GEO series:GSE243977
GEO series:GSE247128
GEO series:GSE245620
ASAP
1,000 cells
Explore
h5ad
Mus musculus
Mus musculus
Retinal ganglion cell
+9
Retinal ganglion cell
Retina
Retina
Organism
Mus musculus
Cell type
Retinal ganglion cell
Microglial cell
Glial cell
Pericyte
Retinal cone cell
Amacrine cell
Rod bipolar cell
Endothelial cell
Cone retinal bipolar cell
Retinal rod cell
Tissue
Retina
Developmental stage
Disease
Sex
Technology
Suspension type
CELLxGENE
959 cells
•
Anderson-Crannage et al., 2023
Inflammation-mediated fibroblast activation and immune dysregulation in collagen VII-deficient skin
Explore
h5ad
Mus musculus
Mus musculus
Schwann cell
+8
Schwann cell
Autopod skin
Autopod skin
2-week-old stage
2-week-old stage
Epidermolysis bullosa
+1
Epidermolysis bullosa
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Mus musculus
Cell type
Schwann cell
Innate lymphoid cell
Pericyte
Neutrophil
Endothelial cell
Chondrocyte
Fibroblast of lymphatic vessel
Fibroblast
Professional antigen presenting cell
Tissue
Autopod skin
Developmental stage
2-week-old stage
Disease
Epidermolysis bullosa
Normal
Sex
Technology
10x 3' v3
Suspension type
Cell
Related Links
GEO series:GSE222250
CELLxGENE
955 cells
•
Kanemaru et al., 2023
Spatially resolved multiomics of human cardiac niches
Explore
h5ad
Homo sapiens
Homo sapiens
Regular atrial cardiac myocyte
Regular atrial cardiac myocyte
Atrioventricular node
Atrioventricular node
Fifth decade stage
+1
Fifth decade stage
Normal
Normal
Female
+1
Female
10x multiome
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Regular atrial cardiac myocyte
Tissue
Atrioventricular node
Developmental stage
Fifth decade stage
Eighth decade stage
Disease
Normal
Sex
Female
Male
Technology
10x multiome
Suspension type
Nucleus
Related Links
heartcellatlas.org
ArrayExpress BioStudies:E-MTAB-12916
ArrayExpress BioStudies:E-MTAB-12919
ArrayExpress BioStudies:E-MTAB-12975
HumanCellAtlas:925f9a4c-cac0-444a-ad2c-612656ab3a85
CELLxGENE
935 cells
•
Moorman et al., 2025
Author Correction: Progressive plasticity during colorectal cancer metastasis
Explore
h5ad
Homo sapiens
Homo sapiens
Malignant cell
Malignant cell
Liver
+2
Liver
44-year-old stage
44-year-old stage
Colorectal cancer
Colorectal cancer
Male
Male
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Malignant cell
Tissue
Liver
Chest wall
Rectum
Developmental stage
44-year-old stage
Disease
Colorectal cancer
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
Github:dpeerlab/progressive-plasticity-crc-metastasis.git
CELLxGENE
906 cells
•
Almanzar et al., 2020
A single-cell transcriptomic atlas characterizes ageing tissues in the mouse
Explore
h5ad
Mus musculus
Mus musculus
Aortic endothelial cell
+5
Aortic endothelial cell
Aorta
Aorta
20-month-old stage and over
+2
20-month-old stage and over
Normal
Normal
Female
+1
Female
Smart-seq2
Smart-seq2
Cell
Cell
Organism
Mus musculus
Cell type
Aortic endothelial cell
Macrophage
Fibroblast of cardiac tissue
Circulating fibrocyte
Epithelial cell
Professional antigen presenting cell
Tissue
Aorta
Developmental stage
20-month-old stage and over
18-month-old stage
3-month-old stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
Suspension type
Cell
Related Links
FigShare Dataset:Processed_files_to_use_with_scanpy_/8273102/2
CZ BioHub Portal:tabula-muris-senis
Github:czbiohub/tabula-muris-senis
GEO series:GSE132042
protocols.io:smartseq2-for-htp-generation-of-facs-sorted-single-2uwgexe
Single Cell Portal
894 cells
Explore
Mus musculus
Mus musculus
Neuron
Neuron
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Neuron
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
CELLxGENE
893 cells
•
Fujimoto et al., 2020
Single-cell mapping reveals new markers and functions of lymphatic endothelial cells in lymph nodes
Explore
h5ad
Mus musculus
Mus musculus
Lymph node lymphatic vessel endothelial cell
+3
Lymph node lymphatic vessel endothelial cell
Inguinal lymph node
Inguinal lymph node
2-month-old stage
2-month-old stage
Normal
Normal
Female
Female
Smart-seq2
Smart-seq2
Cell
Cell
Organism
Mus musculus
Cell type
Lymph node lymphatic vessel endothelial cell
Lymphatic endothelial cell of subcapsular sinus floor
Lymphatic endothelial cell of subcapsular sinus ceiling
Lymphatic endothelial cell of medulla ceiling
Tissue
Inguinal lymph node
Developmental stage
2-month-old stage
Disease
Normal
Sex
Female
Technology
Smart-seq2
Suspension type
Cell
Related Links
ArrayExpress BioStudies:E-MTAB-8414
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