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Disease
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Technology
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Cell
934
Nucleus
679
Data Source
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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
Sort
Most cells
Fewest cells
2515
datasets
CELLxGENE
4,355 cells
•
Xiang et al., 2020
A Single-Cell Transcriptional Roadmap of the Mouse and Human Lymph Node Lymphatic Vasculature
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell of lymphatic vessel
Endothelial cell of lymphatic vessel
Cervical lymph node
Cervical lymph node
Adult stage
Adult stage
Normal
Normal
Male
Male
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Endothelial cell of lymphatic vessel
Tissue
Cervical lymph node
Developmental stage
Adult stage
Disease
Normal
Sex
Male
Technology
10x 3' v2
Suspension type
Cell
Related Links
ncbi.nlm.nih.gov
med.stanford.edu
ncbi.nlm.nih.gov
igp.uu.se
CELLxGENE
4,335 cells
•
Voigt et al., 2019
Single-cell transcriptomics of the human retinal pigment epithelium and choroid in health and macular degeneration
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell
+9
Endothelial cell
Peripheral region of retina
+1
Peripheral region of retina
54-year-old stage
+2
54-year-old stage
Basal laminar drusen
+2
Basal laminar drusen
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Endothelial cell
Mature nk t cell
Retinal pigment epithelial cell
Mast cell
Schwann cell
Melanocyte
Macrophage
B cell
Pericyte
Fibroblast
Tissue
Peripheral region of retina
Fovea centralis
Developmental stage
54-year-old stage
82-year-old stage
79-year-old stage
Disease
Basal laminar drusen
Cataract
Age related macular degeneration 7
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
cells.ucsc.edu
explore.data.humancellatlas.org
GSE135922
ebi.ac.uk
CELLxGENE
4,333 cells
•
Guilliams et al., 2022
Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches
Explore
h5ad
Homo sapiens
Homo sapiens
Neutrophil
+16
Neutrophil
Liver
Liver
68-year-old stage
+2
68-year-old stage
Normal
Normal
Female
+1
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Neutrophil
Hepatocyte
Endothelial cell of periportal hepatic sinusoid
Erythrocyte
Kupffer cell
Plasmacytoid dendritic cell
Hepatic stellate cell
Macrophage
Endothelial cell of pericentral hepatic sinusoid
Cholangiocyte
Plasma cell
B cell
Vascular associated smooth muscle cell
Basophil
Conventional dendritic cell
Fibroblast
Non-classical monocyte
Tissue
Liver
Developmental stage
68-year-old stage
58-year-old stage
59-year-old stage
Disease
Normal
Sex
Female
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
GSE192742
livercellatlas.org
explore.data.humancellatlas.org
CELLxGENE
4,329 cells
•
Wang et al., 2019
Single-cell transcriptome analysis reveals differential nutrient absorption functions in human intestine
Explore
h5ad
Homo sapiens
Homo sapiens
Stem cell
+6
Stem cell
Ascending colon epithelium
Ascending colon epithelium
54-year-old stage
+1
54-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Stem cell
Transit amplifying cell of colon
Paneth cell of colon
Colon goblet cell
Progenitor cell
Colonocyte
Enteroendocrine cell of colon
Tissue
Ascending colon epithelium
Developmental stage
54-year-old stage
67-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v2
Suspension type
Cell
Related Links
ebi.ac.uk
cells.ucsc.edu
GSE125970
CELLxGENE
4,328 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Vascular leptomeningeal cell
Vascular leptomeningeal cell
Middle temporal gyrus
Middle temporal gyrus
69-year-old stage
+21
69-year-old stage
Normal
+1
Normal
Female
+1
Female
10x multiome
+1
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Vascular leptomeningeal cell
Tissue
Middle temporal gyrus
Developmental stage
69-year-old stage
75-year-old stage
65-year-old stage
89-year-old stage
87-year-old stage
85-year-old stage
88-year-old stage
68-year-old stage
29-year-old stage
84-year-old stage
82-year-old stage
50-year-old stage
80-year-old stage
72-year-old stage
81-year-old stage
80 year-old and over stage
Adult stage
77-year-old stage
86-year-old stage
70-year-old stage
78-year-old stage
83-year-old stage
Disease
Normal
Dementia
Sex
Female
Male
Technology
10x multiome
10x 3' v3
Suspension type
Nucleus
Related Links
UW Alzheimer's Disease Research Center
Adult Changes in Thought Study
UW BioRepository and Integrated Neuropathology
SEA-AD Homepage
AD Knowledge Portal
DOWNLOAD OFFICIAL DATASET
CELLxGENE
4,289 cells
•
Bakken et al., 2021
Comparative cellular analysis of motor cortex in human, marmoset and mouse
Explore
h5ad
Callithrix jacchus
Callithrix jacchus
Oligodendrocyte precursor cell
+6
Oligodendrocyte precursor cell
Primary motor cortex
Primary motor cortex
Post-juvenile adult stage
Post-juvenile adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Callithrix jacchus
Cell type
Oligodendrocyte precursor cell
Endothelial cell
Oligodendrocyte
Microglial cell
Leptomeningeal cell
Pericyte
Astrocyte
Tissue
Primary motor cortex
Developmental stage
Post-juvenile adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
Nuclei Isolation from Adult Human Brain Tissue for 10x
Human Tissue Slicing and Dissections for Nuclear Isolations
NeMo Analytics - individual species
Nuclei Isolation from Adult_Human_Brain_Tissue
github.com
Cytosplore Viewer
NeMo Analytics - integrated species
github.com
Preparation of frozen nuclei for single-nucleus RNA
github.com
NeMO Archive
Extraction of Nuclei from Brain Tissue
CELLxGENE
4,232 cells
•
Szabo et al., 2021
Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19
Explore
h5ad
Homo sapiens
Homo sapiens
Mature nk t cell
+4
Mature nk t cell
Blood
Blood
82-year-old stage
82-year-old stage
Covid-19
Covid-19
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Mature nk t cell
Platelet
Myeloid cell
Plasma cell
B cell
Tissue
Blood
Developmental stage
82-year-old stage
Disease
Covid-19
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
data.mendeley.com
github.com
covid19cellatlas.org
CELLxGENE
4,211 cells
•
Fawkner-Corbett et al., 2021
Spatiotemporal analysis of human intestinal development at single-cell resolution
Explore
h5ad
Homo sapiens
Homo sapiens
Smooth muscle cell of large intestine
+3
Smooth muscle cell of large intestine
Hindgut
+2
Hindgut
19th week post-fertilization stage
+11
19th week post-fertilization stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Smooth muscle cell of large intestine
Interstitial cell of cajal
Enteric smooth muscle cell
Smooth muscle cell of small intestine
Tissue
Hindgut
Ileum
Colon
Developmental stage
19th week post-fertilization stage
21st week post-fertilization stage
23rd week post-fertilization stage
13th week post-fertilization stage
14th week post-fertilization stage
20th week post-fertilization stage
17th week post-fertilization stage
16th week post-fertilization stage
10th week post-fertilization stage
18th week post-fertilization stage
Carnegie stage 22
11th week post-fertilization stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
GSE158328
simmonslab.shinyapps.io
Supplementary data
dropbox.com
GSE158702
explore.data.humancellatlas.org
CELLxGENE
4,173 cells
•
Article
Explore
h5ad
Mus musculus
Mus musculus
Granulosa cell
+19
Granulosa cell
Ovary
Ovary
12-month-old stage
12-month-old stage
Normal
Normal
Female
Female
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Granulosa cell
Blood vessel endothelial cell
Stromal cell
Endothelial cell of lymphatic vessel
Cumulus granulosa cell
Smooth muscle cell
Steroidogenic stromal cell of ovary
Endothelial cell of vascular tree
Ovarian surface epithelial cell
Adipocyte
Macrophage
Oviduct secretory cell
Plasma cell
Oocyte
Late luteal cell
Atretic granulosa cell
Early luteal cell
Theca cell
Ovarian fibroblast
Mural granulosa cell
Tissue
Ovary
Developmental stage
12-month-old stage
Disease
Normal
Sex
Female
Technology
Slide-seqv2
Suspension type
CELLxGENE
4,166 cells
•
Sampath Kumar et al., 2023
Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis
Explore
h5ad
Mus musculus
Mus musculus
Cardiac valve cell
+9
Cardiac valve cell
Embryo
Embryo
Theiler stage 14
Theiler stage 14
Normal
Normal
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Cardiac valve cell
Spinal cord interneuron
Premigratory neural crest cell
Neuroplacodal cell
Hemangioblast
Mesodermal cell
Gut endothelial cell
Primitive red blood cell
Midbrain dopaminergic neuron
Endodermal cell
Tissue
Embryo
Developmental stage
Theiler stage 14
Disease
Normal
Sex
Technology
Slide-seqv2
Suspension type
Related Links
insitubiology.org
GSE197353
figshare.com
figshare.com
figshare.com
CELLxGENE
4,163 cells
•
Fawkner-Corbett et al., 2021
Spatiotemporal analysis of human intestinal development at single-cell resolution
Explore
h5ad
Homo sapiens
Homo sapiens
Pericyte
Pericyte
Hindgut
+2
Hindgut
19th week post-fertilization stage
+11
19th week post-fertilization stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Pericyte
Tissue
Hindgut
Ileum
Colon
Developmental stage
19th week post-fertilization stage
21st week post-fertilization stage
23rd week post-fertilization stage
13th week post-fertilization stage
14th week post-fertilization stage
20th week post-fertilization stage
17th week post-fertilization stage
16th week post-fertilization stage
10th week post-fertilization stage
18th week post-fertilization stage
Carnegie stage 22
11th week post-fertilization stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
GSE158328
simmonslab.shinyapps.io
Supplementary data
dropbox.com
GSE158702
explore.data.humancellatlas.org
Single Cell Portal
4,158 cells
Explore
Mus musculus
Mus musculus
Obsolete inhibitory neuron
+3
Obsolete inhibitory neuron
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Obsolete inhibitory neuron
Brain microvascular endothelial cell
Obsolete excitatory neuron
Astrocyte
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD703) (section 281)
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