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Cell
893
Nucleus
659
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Asap
43
Bgee
40
Cellxgene
2,077
Single cell portal
179
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Most cells
Fewest cells
2339
datasets
CELLxGENE
1,837 cells
•
Nguyen et al., 2021
Single-nucleus transcriptomic analysis of human dorsal root ganglion neurons
Explore
h5ad
Homo sapiens
Homo sapiens
Sensory neuron of dorsal root ganglion
Sensory neuron of dorsal root ganglion
Dorsal root ganglion
Dorsal root ganglion
34-year-old stage
+3
34-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v2
+1
10x 3' v2
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Sensory neuron of dorsal root ganglion
Tissue
Dorsal root ganglion
Developmental stage
34-year-old stage
55-year-old stage
35-year-old stage
36-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v2
10x 3' v3
Suspension type
Nucleus
Related Links
GEO series:GSE168243
pmc.ncbi.nlm.nih.gov
CELLxGENE
1,833 cells
•
Almanzar et al., 2020
A single-cell transcriptomic atlas characterizes ageing tissues in the mouse
Explore
h5ad
Mus musculus
Mus musculus
Kidney interstitial fibroblast
+9
Kidney interstitial fibroblast
Kidney
Kidney
20-month-old stage and over
+2
20-month-old stage and over
Normal
Normal
Female
+1
Female
Smart-seq2
Smart-seq2
Cell
Cell
Organism
Mus musculus
Cell type
Kidney interstitial fibroblast
T cell
B cell
Epithelial cell of proximal tubule
Kidney collecting duct principal cell
Macrophage
Kidney loop of henle ascending limb epithelial cell
Mesangial cell
Kidney collecting duct epithelial cell
Fenestrated endothelial cell
Tissue
Kidney
Developmental stage
20-month-old stage and over
18-month-old stage
3-month-old stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
Suspension type
Cell
Related Links
CZ BioHub Portal:tabula-muris-senis
protocols.io:smartseq2-for-htp-generation-of-facs-sorted-single-2uwgexe
Github:czbiohub/tabula-muris-senis
GEO series:GSE132042
FigShare Dataset:Processed_files_to_use_with_scanpy_/8273102/2
Single Cell Portal
1,825 cells
Explore
Mus musculus
Mus musculus
Oligodendrocyte precursor cell
Oligodendrocyte precursor cell
Brain ischemia
+1
Brain ischemia
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Oligodendrocyte precursor cell
Tissue
Developmental stage
Disease
Brain ischemia
Normal
Sex
Technology
10x 3' v2
Suspension type
CELLxGENE
1,790 cells
•
McGlade et al., 2021
Cell‐type specific analysis of physiological action of estrogen in mouse oviducts
Explore
h5ad
Homo sapiens
Homo sapiens
Fallopian tube secretory epithelial cell
+6
Fallopian tube secretory epithelial cell
Fallopian tube
Fallopian tube
Prime adult stage
Prime adult stage
Normal
Normal
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Fallopian tube secretory epithelial cell
Lymphocyte
Macrophage
Myeloid leukocyte
Endothelial cell
Cell
Blood vessel endothelial cell
Tissue
Fallopian tube
Developmental stage
Prime adult stage
Disease
Normal
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
GEO series:GSE164291
Github:winuthayanon/estrus
CELLxGENE
1,789 cells
•
Govek et al., 2022
Combined single-cell RNA-seq profiling and enhancer editing reveals critical spatiotemporal controls over thalamic nuclei formation in the murine embryo
Explore
h5ad
Mus musculus
Mus musculus
Gabaergic neuron
+1
Gabaergic neuron
Diencephalon
Diencephalon
Theiler stage 20
Theiler stage 20
Normal
Normal
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Mus musculus
Cell type
Gabaergic neuron
Neural progenitor cell
Tissue
Diencephalon
Developmental stage
Theiler stage 20
Disease
Normal
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Single Cell Portal
1,781 cells
Explore
Mus musculus
Mus musculus
Dendritic cell
+5
Dendritic cell
Normal
Normal
Mixed sex
Mixed sex
10x 3' v3
10x 3' v3
Organism
Mus musculus
Cell type
Dendritic cell
T cell
B cell
Neutrophil
Macrophage
Stromal cell
Tissue
Developmental stage
Disease
Normal
Sex
Mixed sex
Technology
10x 3' v3
Suspension type
CELLxGENE
1,777 cells
•
Orozco et al., 2020
Integration of eQTL and a Single-Cell Atlas in the Human Eye Identifies Causal Genes for Age-Related Macular Degeneration
Explore
h5ad
Homo sapiens
Homo sapiens
Retinal ganglion cell
+2
Retinal ganglion cell
Retina
Retina
77-year-old stage
+3
77-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Retinal ganglion cell
Off retinal ganglion cell
On retinal ganglion cell
Tissue
Retina
Developmental stage
77-year-old stage
79-year-old stage
65-year-old stage
70-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
GEO series:GSE135133
BroadInstitute Single-Cell Portal:SCP484/nucseq-from-human-control-eyes-scrnaseq
HumanCellAtlas:e090445c-6971-4212-bc5f-ae4ec3914102
CELLxGENE
1,705 cells
•
Bakken et al., 2021
Comparative cellular analysis of motor cortex in human, marmoset and mouse
Explore
h5ad
Homo sapiens
Homo sapiens
Oligodendrocyte
+5
Oligodendrocyte
Primary motor cortex
Primary motor cortex
60-year-old stage
+1
60-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Oligodendrocyte
Astrocyte
Microglial cell
Oligodendrocyte precursor cell
Leptomeningeal cell
Endothelial cell
Tissue
Primary motor cortex
Developmental stage
60-year-old stage
50-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
protocols.io:isolation-of-nuclei-from-adult-human-brain-tissue-j8nlk56k1l5r/v1
nemoanalytics.org
protocols.io:isolation-of-nuclei-from-adult-human-brain-tissue-eq2lyd1nqlx9/v2
Github:broadinstitute/Drop-seq
viewer.cytosplore.org
nemoanalytics.org
Github:AllenInstitute/BICCN_M1_Evo
Github:AllenInstitute/scrattch.hicat
NeMo archive:dat-ek5dbmu
protocols.io:extraction-of-nuclei-from-brain-tissue-2srged6
protocols.io:human-tissue-slicing-and-dissections-for-nuclear-i-dm6gpre85vzp
protocols.io:preparation-of-frozen-nuclei-for-single-nucleus-rn-eq2lyrdpgx9k/v1
CELLxGENE
1,685 cells
•
de Morree et al., 2025
A molecular cell atlas of mouse lemur, an emerging model primate
Explore
h5ad
Microcebus murinus
Microcebus murinus
Natural killer cell
+14
Natural killer cell
Uterus
Uterus
Post-juvenile adult stage
Post-juvenile adult stage
Normal
Normal
Female
Female
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Microcebus murinus
Cell type
Natural killer cell
Endothelial cell of artery
Pericyte
Endothelial cell of lymphatic vessel
Neutrophil
Mature nk t cell
Smooth muscle cell
Myofibroblast cell
Macrophage
Cd8-positive, alpha-beta t cell
Vascular associated smooth muscle cell
Endothelial cell
Epithelial cell of uterus
Vein endothelial cell
Fibroblast
Tissue
Uterus
Developmental stage
Post-juvenile adult stage
Disease
Normal
Sex
Female
Technology
10x 3' v2
Suspension type
Cell
Related Links
tabula-microcebus.sf.czbiohub.org
UCSC Cell Browser:tabula-microcebus
app.globus.org
CELLxGENE
1,679 cells
•
Tasic et al., 2016
Adult mouse cortical cell taxonomy revealed by single cell transcriptomics
Explore
h5ad
Mus musculus
Mus musculus
Oligodendrocyte
+6
Oligodendrocyte
Primary visual cortex
Primary visual cortex
Prime adult stage
Prime adult stage
Normal
Normal
Male
Male
Smart-seq
Smart-seq
Cell
Cell
Organism
Mus musculus
Cell type
Oligodendrocyte
Astrocyte
Microglial cell
Oligodendrocyte precursor cell
Gabaergic neuron
Endothelial cell
Glutamatergic neuron
Tissue
Primary visual cortex
Developmental stage
Prime adult stage
Disease
Normal
Sex
Male
Technology
Smart-seq
Suspension type
Cell
Related Links
ncbi.nlm.nih.gov
Single Cell Expression Atlas Experiment:E-GEOD-71585
BroadInstitute Single-Cell Portal:SCP6
CELLxGENE
1,647 cells
•
Joseph et al., 2020
Urethral luminal epithelia are castration‐insensitive cells of the proximal prostate
Explore
h5ad
Mus musculus
Mus musculus
Smooth muscle cell of prostate
+1
Smooth muscle cell of prostate
Prostate gland
+1
Prostate gland
2-month-old stage
2-month-old stage
Normal
Normal
Male
Male
10x 3' v2
+1
10x 3' v2
Cell
Cell
Organism
Mus musculus
Cell type
Smooth muscle cell of prostate
Fibroblast of connective tissue of prostate
Tissue
Prostate gland
Urethra
Developmental stage
2-month-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v2
10x 3' v3
Suspension type
Cell
Related Links
strandlab.net
GEO series:GSE145928
GEO series:GSE145929
DOI:10.25548/16-WM8C
CELLxGENE
1,641 cells
•
He et al., 2022
A human fetal lung cell atlas uncovers proximal-distal gradients of differentiation and key regulators of epithelial fates
Explore
h5ad
Homo sapiens
Homo sapiens
Lung multiciliated epithelial cell
Lung multiciliated epithelial cell
Lung
Lung
11th week post-fertilization stage
+4
11th week post-fertilization stage
Normal
Normal
Female
+1
Female
10x 5' v1
10x 5' v1
Cell
Cell
Organism
Homo sapiens
Cell type
Lung multiciliated epithelial cell
Tissue
Lung
Developmental stage
11th week post-fertilization stage
15th week post-fertilization stage
20th week post-fertilization stage
18th week post-fertilization stage
22nd week post-fertilization stage
Disease
Normal
Sex
Female
Male
Technology
10x 5' v1
Suspension type
Cell
Related Links
ArrayExpress BioStudies:E-MTAB-11278
ArrayExpress BioStudies:E-MTAB-11267
ArrayExpress BioStudies:E-MTAB-11265
Sanger Dataset:fetal-lung
genome.ucsc.edu
Github:Peng-He-Lab/Human_fetal_lung_cell_atlas_2022
ArrayExpress BioStudies:E-MTAB-11266
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