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Cell Type
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Tissue
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Disease
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Sex
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Technology
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Cell
934
Nucleus
679
Data Source
0
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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
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Most cells
Fewest cells
2515
datasets
CELLxGENE
4,562 cells
•
Sampath Kumar et al., 2023
Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis
Explore
h5ad
Mus musculus
Mus musculus
Cardiac valve cell
+15
Cardiac valve cell
Embryo
Embryo
Theiler stage 14
Theiler stage 14
Normal
Normal
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Cardiac valve cell
Spinal cord interneuron
Premigratory neural crest cell
Paraxial cell
Notochordal cell
Neuroplacodal cell
Neurectodermal cell
Hemangioblast
Mesodermal cell
Gut endothelial cell
Primitive red blood cell
Splanchnic mesodermal cell
Surface ectodermal cell
Midbrain dopaminergic neuron
Endodermal cell
Anterior visceral endoderm cell
Tissue
Embryo
Developmental stage
Theiler stage 14
Disease
Normal
Sex
Technology
Slide-seqv2
Suspension type
Related Links
insitubiology.org
GSE197353
figshare.com
figshare.com
figshare.com
CELLxGENE
4,526 cells
•
Matson et al., 2022
Single cell atlas of spinal cord injury in mice reveals a pro-regenerative signature in spinocerebellar neurons
Explore
h5ad
Mus musculus
Mus musculus
Astrocyte
Astrocyte
Spinal cord
Spinal cord
3-6 month-old mature stage
3-6 month-old mature stage
Spinal cord injury
+1
Spinal cord injury
Female
Female
10x 3' v2
10x 3' v2
Nucleus
Nucleus
Organism
Mus musculus
Cell type
Astrocyte
Tissue
Spinal cord
Developmental stage
3-6 month-old mature stage
Disease
Spinal cord injury
Normal
Sex
Female
Technology
10x 3' v2
Suspension type
Nucleus
Related Links
GSE172167
CELLxGENE
4,517 cells
•
Sampath Kumar et al., 2023
Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis
Explore
h5ad
Mus musculus
Mus musculus
Cardiac valve cell
+15
Cardiac valve cell
Embryo
Embryo
Theiler stage 14
Theiler stage 14
Normal
Normal
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Cardiac valve cell
Spinal cord interneuron
Premigratory neural crest cell
Paraxial cell
Notochordal cell
Neuroplacodal cell
Neurectodermal cell
Hemangioblast
Mesodermal cell
Gut endothelial cell
Primitive red blood cell
Splanchnic mesodermal cell
Surface ectodermal cell
Midbrain dopaminergic neuron
Endodermal cell
Anterior visceral endoderm cell
Tissue
Embryo
Developmental stage
Theiler stage 14
Disease
Normal
Sex
Technology
Slide-seqv2
Suspension type
Related Links
insitubiology.org
GSE197353
figshare.com
figshare.com
figshare.com
CELLxGENE
4,507 cells
•
Sampath Kumar et al., 2023
Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis
Explore
h5ad
Mus musculus
Mus musculus
Cardiac valve cell
+15
Cardiac valve cell
Embryo
Embryo
Theiler stage 14
Theiler stage 14
Normal
Normal
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Cardiac valve cell
Spinal cord interneuron
Premigratory neural crest cell
Paraxial cell
Notochordal cell
Neuroplacodal cell
Neurectodermal cell
Hemangioblast
Mesodermal cell
Gut endothelial cell
Primitive red blood cell
Splanchnic mesodermal cell
Surface ectodermal cell
Midbrain dopaminergic neuron
Endodermal cell
Anterior visceral endoderm cell
Tissue
Embryo
Developmental stage
Theiler stage 14
Disease
Normal
Sex
Technology
Slide-seqv2
Suspension type
Related Links
insitubiology.org
GSE197353
figshare.com
figshare.com
figshare.com
CELLxGENE
4,494 cells
•
Oliver et al., 2024
Single-cell integration reveals metaplasia in inflammatory gut diseases
Explore
h5ad
Homo sapiens
Homo sapiens
Basal cell
+3
Basal cell
Gingiva
+2
Gingiva
37-year-old stage
+15
37-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Basal cell
Melanocyte
Epithelial cell
Keratinocyte
Tissue
Gingiva
Buccal mucosa
Periodontium
Developmental stage
37-year-old stage
21-year-old stage
61-year-old stage
39-year-old stage
28-year-old stage
51-year-old stage
57-year-old stage
24-year-old stage
23-year-old stage
35-year-old stage
Adult stage
32-year-old stage
33-year-old stage
31-year-old stage
22-year-old stage
Young adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
Teichmann Lab
E-MTAB-14050
CELLxGENE
4,475 cells
•
Oliver et al., 2024
Single-cell integration reveals metaplasia in inflammatory gut diseases
Explore
h5ad
Homo sapiens
Homo sapiens
Intestine goblet cell
+6
Intestine goblet cell
Colon
Colon
19th week post-fertilization stage
+4
19th week post-fertilization stage
Normal
Normal
Female
+1
Female
10x 5' v2
+1
10x 5' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Intestine goblet cell
Best4+ enterocyte
Epithelial cell
Enteroendocrine cell
Intestinal crypt stem cell
Colonocyte
M cell of gut
Tissue
Colon
Developmental stage
19th week post-fertilization stage
15th week post-fertilization stage
17th week post-fertilization stage
12th week post-fertilization stage
16th week post-fertilization stage
Disease
Normal
Sex
Female
Male
Technology
10x 5' v2
10x 3' v2
Suspension type
Cell
Related Links
Teichmann Lab
E-MTAB-14050
CELLxGENE
4,454 cells
•
Almanzar et al., 2020
A single-cell transcriptomic atlas characterizes ageing tissues in the mouse
Explore
h5ad
Mus musculus
Mus musculus
T cell
+4
T cell
Skin of body
Skin of body
20-month-old stage and over
+1
20-month-old stage and over
Normal
Normal
Female
+1
Female
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Mus musculus
Cell type
T cell
Stem cell of epidermis
Basal cell of epidermis
Epidermal cell
Keratinocyte stem cell
Tissue
Skin of body
Developmental stage
20-month-old stage and over
18-month-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v2
Suspension type
Cell
Related Links
GSE132042
Processed files
Tabula Muris Senis
SmartSeq2 for HTP Generation of FACS Sorted Single Cell Libraries V.1
github.com
CELLxGENE
4,448 cells
•
Article
Explore
h5ad
Mus musculus
Mus musculus
T cell
+20
T cell
Ovary
Ovary
3-month-old stage
3-month-old stage
Normal
Normal
Female
Female
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
T cell
Granulosa cell
Blood vessel endothelial cell
Stromal cell
Endothelial cell of lymphatic vessel
Cumulus granulosa cell
Smooth muscle cell
Steroidogenic stromal cell of ovary
Endothelial cell of vascular tree
Ovarian surface epithelial cell
Adipocyte
Macrophage
Oviduct secretory cell
Oocyte
Late luteal cell
Atretic granulosa cell
Early luteal cell
Theca cell
Dendritic cell
Ovarian fibroblast
Mural granulosa cell
Tissue
Ovary
Developmental stage
3-month-old stage
Disease
Normal
Sex
Female
Technology
Slide-seqv2
Suspension type
CELLxGENE
4,425 cells
•
De Simone et al., 2024
A comprehensive analysis framework for evaluating commercial single-cell RNA sequencing technologies
Explore
h5ad
Homo sapiens
Homo sapiens
Natural killer cell
+8
Natural killer cell
Blood
Blood
42-year-old stage
42-year-old stage
Normal
Normal
Male
Male
Asteria scrna-seq kit
Asteria scrna-seq kit
Cell
Cell
Organism
Homo sapiens
Cell type
Natural killer cell
Cytotoxic t cell
Plasmacytoid dendritic cell
Cd4-positive, alpha-beta t cell
Cd14-positive monocyte
Megakaryocyte
Cd14-low, cd16-positive monocyte
B cell
Dendritic cell
Tissue
Blood
Developmental stage
42-year-old stage
Disease
Normal
Sex
Male
Technology
Asteria scrna-seq kit
Suspension type
Cell
Related Links
github.com
PRJNA1106903
zenodo.org
CELLxGENE
4,420 cells
•
Article
Explore
h5ad
Mus musculus
Mus musculus
T cell
+21
T cell
Ovary
Ovary
12-month-old stage
12-month-old stage
Normal
Normal
Female
Female
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
T cell
Granulosa cell
Blood vessel endothelial cell
Stromal cell
Endothelial cell of lymphatic vessel
Cumulus granulosa cell
Mast cell
Smooth muscle cell
Steroidogenic stromal cell of ovary
Endothelial cell of vascular tree
Ovarian surface epithelial cell
Adipocyte
Macrophage
Oviduct secretory cell
Plasma cell
Oocyte
Late luteal cell
Atretic granulosa cell
Early luteal cell
Theca cell
Ovarian fibroblast
Mural granulosa cell
Tissue
Ovary
Developmental stage
12-month-old stage
Disease
Normal
Sex
Female
Technology
Slide-seqv2
Suspension type
CELLxGENE
4,419 cells
•
Oliver et al., 2024
Single-cell integration reveals metaplasia in inflammatory gut diseases
Explore
h5ad
Homo sapiens
Homo sapiens
Best4+ enterocyte
+2
Best4+ enterocyte
Colon
Colon
Carnegie stage 19
+7
Carnegie stage 19
Normal
Normal
Female
+1
Female
10x 5' v2
+1
10x 5' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Best4+ enterocyte
Epithelial cell
Progenitor cell
Tissue
Colon
Developmental stage
Carnegie stage 19
12th week post-fertilization stage
9th week post-fertilization stage
10th week post-fertilization stage
Carnegie stage 17
Carnegie stage 22
Carnegie stage 18
11th week post-fertilization stage
Disease
Normal
Sex
Female
Male
Technology
10x 5' v2
10x 3' v2
Suspension type
Cell
Related Links
Teichmann Lab
E-MTAB-14050
Single Cell Portal
4,397 cells
Explore
Mus musculus
Mus musculus
Osteoblast
+6
Osteoblast
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Osteoblast
Stromal cell of bone marrow
Endothelial cell
Smooth muscle cell
Macrophage
Cell of skeletal muscle
Chondrocyte
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
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