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Nucleus
679
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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
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Most cells
Fewest cells
2515
datasets
CELLxGENE
4,860 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Vascular leptomeningeal cell
Vascular leptomeningeal cell
Dorsolateral prefrontal cortex
Dorsolateral prefrontal cortex
69-year-old stage
+20
69-year-old stage
Normal
+1
Normal
Female
+1
Female
10x multiome
+1
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Vascular leptomeningeal cell
Tissue
Dorsolateral prefrontal cortex
Developmental stage
69-year-old stage
75-year-old stage
42-year-old stage
89-year-old stage
87-year-old stage
85-year-old stage
88-year-old stage
68-year-old stage
29-year-old stage
84-year-old stage
82-year-old stage
50-year-old stage
80-year-old stage
72-year-old stage
81-year-old stage
80 year-old and over stage
77-year-old stage
86-year-old stage
70-year-old stage
78-year-old stage
83-year-old stage
Disease
Normal
Dementia
Sex
Female
Male
Technology
10x multiome
10x 3' v3
Suspension type
Nucleus
Related Links
UW Alzheimer's Disease Research Center
Adult Changes in Thought Study
UW BioRepository and Integrated Neuropathology
SEA-AD Homepage
AD Knowledge Portal
DOWNLOAD OFFICIAL DATASET
CELLxGENE
4,848 cells
•
Article
Explore
h5ad
Mus musculus
Mus musculus
Granulosa cell
+18
Granulosa cell
Ovary
Ovary
9-month-old stage
9-month-old stage
Normal
Normal
Female
Female
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Granulosa cell
Blood vessel endothelial cell
Stromal cell
Endothelial cell of lymphatic vessel
Cumulus granulosa cell
Smooth muscle cell
Steroidogenic stromal cell of ovary
Endothelial cell of vascular tree
Ovarian surface epithelial cell
Adipocyte
Macrophage
Oviduct secretory cell
Oocyte
Late luteal cell
Atretic granulosa cell
Early luteal cell
Theca cell
Ovarian fibroblast
Mural granulosa cell
Tissue
Ovary
Developmental stage
9-month-old stage
Disease
Normal
Sex
Female
Technology
Slide-seqv2
Suspension type
CELLxGENE
4,847 cells
•
Sampath Kumar et al., 2023
Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis
Explore
h5ad
Mus musculus
Mus musculus
Cardiac valve cell
+12
Cardiac valve cell
Embryo
Embryo
Theiler stage 14
Theiler stage 14
Normal
Normal
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Cardiac valve cell
Spinal cord interneuron
Premigratory neural crest cell
Paraxial cell
Neuroplacodal cell
Hemangioblast
Mesodermal cell
Gut endothelial cell
Primitive red blood cell
Splanchnic mesodermal cell
Surface ectodermal cell
Midbrain dopaminergic neuron
Endodermal cell
Tissue
Embryo
Developmental stage
Theiler stage 14
Disease
Normal
Sex
Technology
Slide-seqv2
Suspension type
Related Links
insitubiology.org
GSE197353
figshare.com
figshare.com
figshare.com
CELLxGENE
4,846 cells
•
Szabo et al., 2021
Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19
Explore
h5ad
Homo sapiens
Homo sapiens
Mature nk t cell
+5
Mature nk t cell
Blood
Blood
74-year-old stage
74-year-old stage
Covid-19
Covid-19
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Mature nk t cell
Platelet
Myeloid cell
Plasma cell
B cell
Dendritic cell
Tissue
Blood
Developmental stage
74-year-old stage
Disease
Covid-19
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
data.mendeley.com
github.com
covid19cellatlas.org
CELLxGENE
4,837 cells
•
Bakken et al., 2021
Comparative cellular analysis of motor cortex in human, marmoset and mouse
Explore
h5ad
Macaca mulatta
Macaca mulatta
Glutamatergic neuron
Glutamatergic neuron
Primary motor cortex
Primary motor cortex
Post-juvenile adult stage
Post-juvenile adult stage
Normal
Normal
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Macaca mulatta
Cell type
Glutamatergic neuron
Tissue
Primary motor cortex
Developmental stage
Post-juvenile adult stage
Disease
Normal
Sex
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
Nuclei Isolation from Adult Human Brain Tissue for 10x
Human Tissue Slicing and Dissections for Nuclear Isolations
NeMo Analytics - individual species
Nuclei Isolation from Adult_Human_Brain_Tissue
github.com
Cytosplore Viewer
NeMo Analytics - integrated species
github.com
Preparation of frozen nuclei for single-nucleus RNA
github.com
NeMO Archive
Extraction of Nuclei from Brain Tissue
CELLxGENE
4,792 cells
•
Szabo et al., 2021
Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19
Explore
h5ad
Homo sapiens
Homo sapiens
Neutrophil
+6
Neutrophil
Blood
Blood
66-year-old stage
66-year-old stage
Covid-19
Covid-19
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Neutrophil
Mature nk t cell
Platelet
Myeloid cell
Plasma cell
B cell
Dendritic cell
Tissue
Blood
Developmental stage
66-year-old stage
Disease
Covid-19
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
data.mendeley.com
github.com
covid19cellatlas.org
CELLxGENE
4,778 cells
•
He et al., 2022
A human fetal lung cell atlas uncovers proximal-distal gradients of differentiation and key regulators of epithelial fates
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+13
T cell
Lung
Lung
Carnegie stage 19
+6
Carnegie stage 19
Normal
Normal
Female
+1
Female
10x 5' v1
10x 5' v1
Cell
Cell
Organism
Homo sapiens
Cell type
T cell
Natural killer cell
Cd8-positive, alpha-beta t cell
Group 2 innate lymphoid cell
Group 3 innate lymphoid cell
Thymocyte
T-helper 17 cell
Cd16-positive, cd56-dim natural killer cell, human
Regulatory t cell
Type ii nk t cell
Type i nk t cell
Cd4-positive, alpha-beta memory t cell
Cd16-negative, cd56-bright natural killer cell, human
Cd34-positive, cd56-positive, cd117-positive common innate lymphoid precursor, human
Tissue
Lung
Developmental stage
Carnegie stage 19
15th week post-fertilization stage
20th week post-fertilization stage
9th week post-fertilization stage
18th week post-fertilization stage
22nd week post-fertilization stage
11th week post-fertilization stage
Disease
Normal
Sex
Female
Male
Technology
10x 5' v1
Suspension type
Cell
Related Links
scRNA / GEX / VDJ (E-MTAB-11278)
Organoid (E-MTAB-11267)
Visium (E-MTAB-11265)
ATAC-seq (E-MTAB-11266)
fetal-lung.cellgeni.sanger.ac.uk
genome.ucsc.edu
github.com
CELLxGENE
4,755 cells
•
Szabo et al., 2021
Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19
Explore
h5ad
Homo sapiens
Homo sapiens
Mature nk t cell
+5
Mature nk t cell
Blood
Blood
74-year-old stage
74-year-old stage
Covid-19
Covid-19
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Mature nk t cell
Platelet
Myeloid cell
Plasma cell
B cell
Dendritic cell
Tissue
Blood
Developmental stage
74-year-old stage
Disease
Covid-19
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
data.mendeley.com
github.com
covid19cellatlas.org
CELLxGENE
4,745 cells
•
Bakken et al., 2021
Comparative cellular analysis of motor cortex in human, marmoset and mouse
Explore
h5ad
Mus musculus
Mus musculus
Oligodendrocyte precursor cell
+7
Oligodendrocyte precursor cell
Primary motor cortex
Primary motor cortex
Prime adult stage
Prime adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Mus musculus
Cell type
Oligodendrocyte precursor cell
Endothelial cell
Oligodendrocyte
Smooth muscle cell
Microglial cell
Leptomeningeal cell
Pericyte
Astrocyte
Tissue
Primary motor cortex
Developmental stage
Prime adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
Nuclei Isolation from Adult Human Brain Tissue for 10x
Human Tissue Slicing and Dissections for Nuclear Isolations
NeMo Analytics - individual species
Nuclei Isolation from Adult_Human_Brain_Tissue
github.com
Cytosplore Viewer
NeMo Analytics - integrated species
github.com
Preparation of frozen nuclei for single-nucleus RNA
github.com
NeMO Archive
Extraction of Nuclei from Brain Tissue
CELLxGENE
4,742 cells
•
Klughammer et al., 2024
A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+8
T cell
Liver
Liver
57-year-old stage
57-year-old stage
Breast cancer
Breast cancer
Female
Female
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
T cell
Hepatocyte
Endothelial cell
Mature nk t cell
Macrophage
Malignant cell
B cell
Monocyte
Fibroblast
Tissue
Liver
Developmental stage
57-year-old stage
Disease
Breast cancer
Sex
Female
Technology
10x 3' v2
Suspension type
Cell
Related Links
humantumoratlas.org
phs002371
CELLxGENE
4,723 cells
•
Sampath Kumar et al., 2023
Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis
Explore
h5ad
Mus musculus
Mus musculus
Cardiac valve cell
+15
Cardiac valve cell
Embryo
Embryo
Theiler stage 14
Theiler stage 14
Normal
Normal
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Cardiac valve cell
Spinal cord interneuron
Premigratory neural crest cell
Paraxial cell
Notochordal cell
Neuroplacodal cell
Neurectodermal cell
Hemangioblast
Mesodermal cell
Gut endothelial cell
Primitive red blood cell
Splanchnic mesodermal cell
Surface ectodermal cell
Midbrain dopaminergic neuron
Endodermal cell
Anterior visceral endoderm cell
Tissue
Embryo
Developmental stage
Theiler stage 14
Disease
Normal
Sex
Technology
Slide-seqv2
Suspension type
Related Links
insitubiology.org
GSE197353
figshare.com
figshare.com
figshare.com
CELLxGENE
4,720 cells
•
Siletti et al., 2023
Transcriptomic diversity of cell types across the adult human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Committed oligodendrocyte precursor
Committed oligodendrocyte precursor
Subthalamic nucleus
+87
Subthalamic nucleus
42-year-old stage
+3
42-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Committed oligodendrocyte precursor
Tissue
Subthalamic nucleus
Medial geniculate body
Brodmann (1909) area 25
Lateral amygdaloid nucleus
Anterior nuclear group
Corticomedial nuclear complex
Pontine reticular formation
Temporal fusiform gyrus
Brodmann (1909) area 19
Centromedian nucleus of thalamus
Intralaminar nuclear group
Medial dorsal nucleus of thalamus
Parabrachial nucleus
Primary visual cortex
Claustrum of brain
Inferior temporal gyrus
Rostral ca3
Nucleus of medulla oblongata
Red nucleus
Subicular complex
Pontine tegmentum
Pontine nuclear group
Globus pallidus
Midbrain nucleus
Piriform cortex
Hippocampal field
Lateral nuclear group of thalamus
Brodmann (1909) area 13
Middle temporal gyrus
Central amygdaloid nucleus
Ventral anterior nucleus of thalamus
Septal nuclear complex
Brodmann (1909) area 35
Cerebellar nuclear complex
Median tuberal portion
Extrastriate cortex
Epithalamus
Dorsal tegmental nucleus
Brodmann (1909) area 38
Lateral entorhinal cortex
Supraoptic nucleus
Brodmann (1909) area 32
Medial entorhinal cortex
Midbrain tectum
Inferior olivary complex
Brodmann (1909) area 40
Inferior frontal gyrus
Substantia nigra
Agranular insular cortex
Brodmann (1909) area 43
Nucleus accumbens
Cerebrocerebellum
Gray matter of midbrain
Substantia innominata
Anterior cortical amygdaloid nucleus
Primary somatosensory cortex
Brodmann (1909) area 14
Anterior olfactory nucleus
Accessory basal amygdaloid nucleus
Pulvinar nucleus
Primary auditory cortex
Hypothalamus
Brodmann (1909) area 23
Primary motor cortex
Brodmann (1909) area 24
Brodmann (1909) area 46
Medial zone of hypothalamus
Posterior parahippocampal gyrus
Basolateral amygdaloid nuclear complex
Perirhinal cortex
Granular insular cortex
Cerebellar vermis
Spinal cord
Retrosplenial region
Cuneus cortex
Dentate gyrus of hippocampal formation
Lateral posterior nucleus of thalamus
Mammillary body
Superior temporal gyrus
Body of caudate nucleus
Uncal ca1
Bed nucleus of stria terminalis
Superior parietal cortex
Lateral geniculate body
Putamen
Pretectal region
Nucleus of dorsal thalamus
Preoptic area
Developmental stage
42-year-old stage
29-year-old stage
50-year-old stage
60-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
data.nemoarchive.org
github (analysis and figures)
github (auto-annotations)
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