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Technology
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Cell
893
Nucleus
659
Data Source
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Asap
43
Bgee
40
Cellxgene
2,077
Single cell portal
179
Sort
Most cells
Fewest cells
2339
datasets
CELLxGENE
2,094 cells
•
Santo et al., 2025
Exploring the utility of snRNA-seq in profiling human bladder tissue: A comprehensive comparison with scRNA-seq
Explore
h5ad
Homo sapiens
Homo sapiens
Dendritic cell
+8
Dendritic cell
Urinary bladder
Urinary bladder
21-year-old stage
21-year-old stage
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Cell
+1
Cell
Organism
Homo sapiens
Cell type
Dendritic cell
T cell
B cell
Monocyte
Mature nk t cell
Macrophage
Granulocyte
Plasma cell
Mast cell
Tissue
Urinary bladder
Developmental stage
21-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
Nucleus
Related Links
Github:basanto/Human_Bladder_scRNA-seq_vs_snRNA-seq
GEO series:GSE267964
CELLxGENE
2,075 cells
•
Xu et al., 2022
Smoking modulates different secretory subpopulations expressing SARS-CoV-2 entry genes in the nasal and bronchial airways
Explore
h5ad
Homo sapiens
Homo sapiens
Natural killer cell
+13
Natural killer cell
Bronchial mucosa
Bronchial mucosa
62-year-old stage
+12
62-year-old stage
Normal
Normal
Female
+1
Female
Cel-seq2
Cel-seq2
Cell
Cell
Organism
Homo sapiens
Cell type
Natural killer cell
Dendritic cell
T cell
Club cell
Basal cell of epithelium of bronchus
Respiratory tract suprabasal cell
Pulmonary ionocyte
Lung secretory cell
Respiratory tract epithelial cell
Bronchial goblet cell
Multiciliated epithelial cell of the bronchus
Mast cell
Deuterosomal cell
Myeloid cell
Tissue
Bronchial mucosa
Developmental stage
62-year-old stage
64-year-old stage
86-year-old stage
74-year-old stage
78-year-old stage
67-year-old stage
87-year-old stage
58-year-old stage
65-year-old stage
69-year-old stage
51-year-old stage
70-year-old stage
71-year-old stage
Disease
Normal
Sex
Female
Male
Technology
Cel-seq2
Suspension type
Cell
Related Links
GEO series:GSE210695
CELLxGENE
2,069 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Cerebral cortex endothelial cell
Cerebral cortex endothelial cell
Middle temporal gyrus
Middle temporal gyrus
43-year-old stage
+23
43-year-old stage
Dementia
+1
Dementia
Female
+1
Female
10x multiome
+1
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Cerebral cortex endothelial cell
Tissue
Middle temporal gyrus
Developmental stage
43-year-old stage
68-year-old stage
88-year-old stage
86-year-old stage
82-year-old stage
83-year-old stage
60-year-old stage
75-year-old stage
80-year-old stage
77-year-old stage
Adult stage
89-year-old stage
78-year-old stage
72-year-old stage
80 year-old and over stage
81-year-old stage
87-year-old stage
84-year-old stage
65-year-old stage
85-year-old stage
50-year-old stage
29-year-old stage
69-year-old stage
70-year-old stage
Disease
Dementia
Normal
Sex
Female
Male
Technology
10x multiome
10x 3' v3
Suspension type
Nucleus
Related Links
Alzheimer's Disease Research Center
BRaIN-lab
Allen Brain Map:seattle-alzheimers-disease
AWS Open Data:allen-sea-ad-atlas
Adult Changes in Thought Study
AD knowledge portal:syn26223298
CELLxGENE
2,065 cells
•
Szabo et al., 2021
Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19
Explore
h5ad
Homo sapiens
Homo sapiens
B cell
+7
B cell
Respiratory airway
Respiratory airway
74-year-old stage
74-year-old stage
Covid-19
Covid-19
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
B cell
Neutrophil
Platelet
Mature nk t cell
Erythrocyte
Epithelial cell
Mast cell
Myeloid cell
Tissue
Respiratory airway
Developmental stage
74-year-old stage
Disease
Covid-19
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
COVID-19 cell atlas
Mendeley Data Dataset:fm7v43jrbk/2
Github:simslab/cluster_diffex2018
CELLxGENE
2,029 cells
•
Isola et al., 2024
A single-cell atlas of the aging mouse ovary
Explore
h5ad
Mus musculus
Mus musculus
Natural killer cell
+10
Natural killer cell
Ovary
Ovary
9-month-old stage
+1
9-month-old stage
Normal
Normal
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Mus musculus
Cell type
Natural killer cell
Dendritic cell
T-helper 17 cell
Innate lymphoid cell
Leukocyte
B cell
Lymphocyte
Monocyte
Cd4-positive, alpha-beta t cell
Macrophage
Myeloid leukocyte
Tissue
Ovary
Developmental stage
9-month-old stage
3-month-old stage
Disease
Normal
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
GEO series:GSE232309
Github:StoutLab/OvarianAgingAtlas
omrf.shinyapps.io
CELLxGENE
1,971 cells
•
Lu et al., 2023
High‐resolution single‐cell transcriptomic survey of cardiomyocytes from patients with hypertrophic cardiomyopathy
Explore
h5ad
Homo sapiens
Homo sapiens
Cardiac muscle cell
Cardiac muscle cell
Interventricular septum
Interventricular septum
Fourth decade stage
+3
Fourth decade stage
Hypertrophic cardiomyopathy
+1
Hypertrophic cardiomyopathy
Female
+1
Female
Modified strt-seq
Modified strt-seq
Cell
Cell
Organism
Homo sapiens
Cell type
Cardiac muscle cell
Tissue
Interventricular septum
Developmental stage
Fourth decade stage
Seventh decade stage
Fifth decade stage
Sixth decade stage
Disease
Hypertrophic cardiomyopathy
Normal
Sex
Female
Male
Technology
Modified strt-seq
Suspension type
Cell
Related Links
ngdc.cncb.ac.cn
CELLxGENE
1,887 cells
•
Almanzar et al., 2020
A single-cell transcriptomic atlas characterizes ageing tissues in the mouse
Explore
h5ad
Mus musculus
Mus musculus
Large intestine goblet cell
+4
Large intestine goblet cell
Large intestine
Large intestine
20-month-old stage and over
20-month-old stage and over
Normal
Normal
Male
Male
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Mus musculus
Cell type
Large intestine goblet cell
Epithelial cell of large intestine
Enterocyte of epithelium of large intestine
Hematopoietic stem cell
Intestinal crypt stem cell
Tissue
Large intestine
Developmental stage
20-month-old stage and over
Disease
Normal
Sex
Male
Technology
10x 3' v2
Suspension type
Cell
Related Links
GEO series:GSE132042
CZ BioHub Portal:tabula-muris-senis
protocols.io:smartseq2-for-htp-generation-of-facs-sorted-single-2uwgexe
Github:czbiohub/tabula-muris-senis
FigShare Dataset:Processed_files_to_use_with_scanpy_/8273102/2
CELLxGENE
1,877 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Sst gabaergic interneuron
Sst gabaergic interneuron
Dorsolateral prefrontal cortex
Dorsolateral prefrontal cortex
42-year-old stage
+20
42-year-old stage
Dementia
+1
Dementia
Female
+1
Female
10x multiome
+1
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Sst gabaergic interneuron
Tissue
Dorsolateral prefrontal cortex
Developmental stage
42-year-old stage
68-year-old stage
88-year-old stage
86-year-old stage
82-year-old stage
83-year-old stage
75-year-old stage
80-year-old stage
77-year-old stage
89-year-old stage
78-year-old stage
72-year-old stage
80 year-old and over stage
81-year-old stage
87-year-old stage
84-year-old stage
85-year-old stage
50-year-old stage
29-year-old stage
69-year-old stage
70-year-old stage
Disease
Dementia
Normal
Sex
Female
Male
Technology
10x multiome
10x 3' v3
Suspension type
Nucleus
Related Links
Alzheimer's Disease Research Center
Adult Changes in Thought Study
BRaIN-lab
Allen Brain Map:seattle-alzheimers-disease
AWS Open Data:allen-sea-ad-atlas
AD knowledge portal:syn26223298
CELLxGENE
1,875 cells
•
Orozco et al., 2020
Integration of eQTL and a Single-Cell Atlas in the Human Eye Identifies Causal Genes for Age-Related Macular Degeneration
Explore
h5ad
Homo sapiens
Homo sapiens
Retina horizontal cell
Retina horizontal cell
Retina
Retina
77-year-old stage
+3
77-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Retina horizontal cell
Tissue
Retina
Developmental stage
77-year-old stage
79-year-old stage
65-year-old stage
70-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
GEO series:GSE135133
BroadInstitute Single-Cell Portal:SCP484/nucseq-from-human-control-eyes-scrnaseq
HumanCellAtlas:e090445c-6971-4212-bc5f-ae4ec3914102
CELLxGENE
1,875 cells
•
Johansen et al., 2023
Interindividual variation in human cortical cell type abundance and expression
Explore
h5ad
Homo sapiens
Homo sapiens
Pvalb chandelier gabaergic interneuron
Pvalb chandelier gabaergic interneuron
Neocortex
Neocortex
Adult stage
Adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Pvalb chandelier gabaergic interneuron
Tissue
Neocortex
Developmental stage
Adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
knowledge.brain-map.org
Allen Brain Map Atlases:rnaseq/human-mtg-10x_sea-ad
Allen Brain Map:classes/multimodal-characterization
NeMo archive:dat-p3eei0g
Github:AllenInstitute/human_variation
CELLxGENE
1,861 cells
•
Andrews et al., 2021
Single‐Cell, Single‐Nucleus, and Spatial RNA Sequencing of the Human Liver Identifies Cholangiocyte and Mesenchymal Heterogeneity
Explore
h5ad
Homo sapiens
Homo sapiens
Cholangiocyte
+2
Cholangiocyte
Caudate lobe of liver
Caudate lobe of liver
Young adult stage
+1
Young adult stage
Normal
Normal
Female
+1
Female
10x 3' v2
+1
10x 3' v2
Cell
+1
Cell
Organism
Homo sapiens
Cell type
Cholangiocyte
Progenitor cell
Centrilobular region hepatocyte
Tissue
Caudate lobe of liver
Developmental stage
Young adult stage
Prime adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v2
10x 3' v3
Suspension type
Cell
Nucleus
Related Links
GEO series:GSE185477
protocols.io:human-liver-caudate-lobe-dissociation-for-scrna-se-q26g77j1gwz1/v2
macparlandlab.shinyapps.io
Github:tallulandrews/Liver_sc_sn_paper_scripts
HumanCellAtlas:8a666b76-daaf-4b1f-9414-e4807a1d1e8b
CELLxGENE
1,858 cells
•
Almanzar et al., 2020
A single-cell transcriptomic atlas characterizes ageing tissues in the mouse
Explore
h5ad
Mus musculus
Mus musculus
Skeletal muscle satellite cell
+5
Skeletal muscle satellite cell
Diaphragm
Diaphragm
20-month-old stage and over
+2
20-month-old stage and over
Normal
Normal
Female
+1
Female
Smart-seq2
Smart-seq2
Cell
Cell
Organism
Mus musculus
Cell type
Skeletal muscle satellite cell
T cell
B cell
Macrophage
Endothelial cell
Mesenchymal stem cell
Tissue
Diaphragm
Developmental stage
20-month-old stage and over
18-month-old stage
3-month-old stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
Suspension type
Cell
Related Links
GEO series:GSE132042
FigShare Dataset:Processed_files_to_use_with_scanpy_/8273102/2
CZ BioHub Portal:tabula-muris-senis
Github:czbiohub/tabula-muris-senis
protocols.io:smartseq2-for-htp-generation-of-facs-sorted-single-2uwgexe
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