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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
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2515
datasets
CELLxGENE
4,992 cells
•
Article
Explore
h5ad
Homo sapiens
Homo sapiens
Connective tissue cell
+4
Connective tissue cell
Gastrocnemius
Gastrocnemius
28-year-old stage
28-year-old stage
Normal
Normal
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Connective tissue cell
Adipocyte
Type ii muscle cell
Type i muscle cell
Type iia muscle cell
Tissue
Gastrocnemius
Developmental stage
28-year-old stage
Disease
Normal
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Github
CELLxGENE
4,992 cells
•
Article
Explore
h5ad
Homo sapiens
Homo sapiens
Connective tissue cell
+4
Connective tissue cell
Vastus lateralis
Vastus lateralis
3-year-old stage
3-year-old stage
Dmd-related muscular dystrophy
Dmd-related muscular dystrophy
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Connective tissue cell
Adipocyte
Type ii muscle cell
Type i muscle cell
Type iia muscle cell
Tissue
Vastus lateralis
Developmental stage
3-year-old stage
Disease
Dmd-related muscular dystrophy
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Github
CELLxGENE
4,992 cells
•
Article
Explore
h5ad
Homo sapiens
Homo sapiens
Connective tissue cell
+3
Connective tissue cell
Tibialis anterior
Tibialis anterior
8-year-old stage
8-year-old stage
Dmd-related muscular dystrophy
Dmd-related muscular dystrophy
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Connective tissue cell
Type ii muscle cell
Type i muscle cell
Type iia muscle cell
Tissue
Tibialis anterior
Developmental stage
8-year-old stage
Disease
Dmd-related muscular dystrophy
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Github
CELLxGENE
4,992 cells
•
Article
Explore
h5ad
Homo sapiens
Homo sapiens
Connective tissue cell
+4
Connective tissue cell
Vastus lateralis
Vastus lateralis
6-year-old stage
6-year-old stage
Dmd-related muscular dystrophy
Dmd-related muscular dystrophy
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Connective tissue cell
Adipocyte
Type ii muscle cell
Type i muscle cell
Type iia muscle cell
Tissue
Vastus lateralis
Developmental stage
6-year-old stage
Disease
Dmd-related muscular dystrophy
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Github
CELLxGENE
4,992 cells
•
Article
Explore
h5ad
Homo sapiens
Homo sapiens
Connective tissue cell
+4
Connective tissue cell
Vastus lateralis
Vastus lateralis
8-year-old stage
8-year-old stage
Dmd-related muscular dystrophy
Dmd-related muscular dystrophy
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Connective tissue cell
Adipocyte
Type ii muscle cell
Type i muscle cell
Type iia muscle cell
Tissue
Vastus lateralis
Developmental stage
8-year-old stage
Disease
Dmd-related muscular dystrophy
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Github
CELLxGENE
4,992 cells
•
Article
Explore
h5ad
Homo sapiens
Homo sapiens
Connective tissue cell
+4
Connective tissue cell
Gastrocnemius
Gastrocnemius
26-year-old stage
26-year-old stage
Normal
Normal
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Connective tissue cell
Adipocyte
Type ii muscle cell
Type i muscle cell
Type iia muscle cell
Tissue
Gastrocnemius
Developmental stage
26-year-old stage
Disease
Normal
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Github
CELLxGENE
4,992 cells
•
Article
Explore
h5ad
Homo sapiens
Homo sapiens
Connective tissue cell
+4
Connective tissue cell
Quadriceps femoris
Quadriceps femoris
11-year-old stage
11-year-old stage
Dmd-related muscular dystrophy
Dmd-related muscular dystrophy
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Connective tissue cell
Adipocyte
Type ii muscle cell
Type i muscle cell
Type iia muscle cell
Tissue
Quadriceps femoris
Developmental stage
11-year-old stage
Disease
Dmd-related muscular dystrophy
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Github
CELLxGENE
4,983 cells
•
Sampath Kumar et al., 2023
Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis
Explore
h5ad
Mus musculus
Mus musculus
Cardiac valve cell
+15
Cardiac valve cell
Embryo
Embryo
Theiler stage 14
Theiler stage 14
Normal
Normal
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Cardiac valve cell
Spinal cord interneuron
Premigratory neural crest cell
Paraxial cell
Notochordal cell
Neuroplacodal cell
Neurectodermal cell
Hemangioblast
Mesodermal cell
Gut endothelial cell
Primitive red blood cell
Splanchnic mesodermal cell
Surface ectodermal cell
Midbrain dopaminergic neuron
Endodermal cell
Anterior visceral endoderm cell
Tissue
Embryo
Developmental stage
Theiler stage 14
Disease
Normal
Sex
Technology
Slide-seqv2
Suspension type
Related Links
insitubiology.org
GSE197353
figshare.com
figshare.com
figshare.com
CELLxGENE
4,912 cells
•
Article
Explore
h5ad
Mus musculus
Mus musculus
Granulosa cell
+19
Granulosa cell
Ovary
Ovary
12-month-old stage
12-month-old stage
Normal
Normal
Female
Female
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Granulosa cell
Blood vessel endothelial cell
Stromal cell
Endothelial cell of lymphatic vessel
Cumulus granulosa cell
Smooth muscle cell
Steroidogenic stromal cell of ovary
Endothelial cell of vascular tree
Ovarian surface epithelial cell
Adipocyte
Macrophage
Oviduct secretory cell
Oocyte
Late luteal cell
Atretic granulosa cell
Early luteal cell
Theca cell
Dendritic cell
Ovarian fibroblast
Mural granulosa cell
Tissue
Ovary
Developmental stage
12-month-old stage
Disease
Normal
Sex
Female
Technology
Slide-seqv2
Suspension type
CELLxGENE
4,880 cells
•
Seeker et al., 2023
Brain matters: unveiling the distinct contributions of region, age, and sex to glia diversity and CNS function
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell of artery
+3
Endothelial cell of artery
Cervical spinal cord white matter
+2
Cervical spinal cord white matter
37-year-old stage
+12
37-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Endothelial cell of artery
Capillary endothelial cell
Mural cell
Vascular associated smooth muscle cell
Tissue
Cervical spinal cord white matter
Brodmann (1909) area 4
White matter of cerebellum
Developmental stage
37-year-old stage
34-year-old stage
42-year-old stage
71-year-old stage
61-year-old stage
39-year-old stage
44-year-old stage
72-year-old stage
74-year-old stage
45-year-old stage
63-year-old stage
73-year-old stage
40-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
seeker-science.shinyapps.io
github.com
explore.data.humancellatlas.org
CELLxGENE
4,865 cells
•
Govek et al., 2022
Combined single-cell RNA-seq profiling and enhancer editing reveals critical spatiotemporal controls over thalamic nuclei formation in the murine embryo
Explore
h5ad
Mus musculus
Mus musculus
Glioblast
+2
Glioblast
Diencephalon
Diencephalon
Theiler stage 24
Theiler stage 24
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Mus musculus
Cell type
Glioblast
Glutamatergic neuron
Gabaergic neuron
Tissue
Diencephalon
Developmental stage
Theiler stage 24
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
CELLxGENE
4,860 cells
•
Almanzar et al., 2020
A single-cell transcriptomic atlas characterizes ageing tissues in the mouse
Explore
h5ad
Mus musculus
Mus musculus
T cell
+5
T cell
Skin of body
Skin of body
3-month-old stage
+2
3-month-old stage
Normal
Normal
Female
+1
Female
Smart-seq2
Smart-seq2
Cell
Cell
Organism
Mus musculus
Cell type
T cell
Basal cell of epidermis
Macrophage
Epidermal cell
Keratinocyte stem cell
Fibroblast
Tissue
Skin of body
Developmental stage
3-month-old stage
20-month-old stage and over
18-month-old stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
Suspension type
Cell
Related Links
GSE132042
Processed files
Tabula Muris Senis
SmartSeq2 for HTP Generation of FACS Sorted Single Cell Libraries V.1
github.com
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