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893
Nucleus
659
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Asap
43
Bgee
40
Cellxgene
2,077
Single cell portal
179
Sort
Most cells
Fewest cells
2339
datasets
CELLxGENE
2,598 cells
•
Szabo et al., 2021
Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19
Explore
h5ad
Homo sapiens
Homo sapiens
B cell
+5
B cell
Respiratory airway
Respiratory airway
66-year-old stage
66-year-old stage
Covid-19
Covid-19
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
B cell
Neutrophil
Mature nk t cell
Erythrocyte
Epithelial cell
Myeloid cell
Tissue
Respiratory airway
Developmental stage
66-year-old stage
Disease
Covid-19
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
Mendeley Data Dataset:fm7v43jrbk/2
Github:simslab/cluster_diffex2018
COVID-19 cell atlas
CELLxGENE
2,590 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
L5 extratelencephalic projecting glutamatergic cortical neuron
L5 extratelencephalic projecting glutamatergic cortical neuron
Middle temporal gyrus
Middle temporal gyrus
43-year-old stage
+23
43-year-old stage
Dementia
+1
Dementia
Female
+1
Female
10x multiome
+1
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
L5 extratelencephalic projecting glutamatergic cortical neuron
Tissue
Middle temporal gyrus
Developmental stage
43-year-old stage
68-year-old stage
88-year-old stage
86-year-old stage
82-year-old stage
83-year-old stage
60-year-old stage
75-year-old stage
80-year-old stage
77-year-old stage
Adult stage
89-year-old stage
78-year-old stage
72-year-old stage
80 year-old and over stage
81-year-old stage
87-year-old stage
84-year-old stage
65-year-old stage
85-year-old stage
50-year-old stage
29-year-old stage
69-year-old stage
70-year-old stage
Disease
Dementia
Normal
Sex
Female
Male
Technology
10x multiome
10x 3' v3
Suspension type
Nucleus
Related Links
Alzheimer's Disease Research Center
Adult Changes in Thought Study
BRaIN-lab
Allen Brain Map:seattle-alzheimers-disease
AWS Open Data:allen-sea-ad-atlas
AD knowledge portal:syn26223298
CELLxGENE
2,576 cells
•
Zhang et al., 2021
Single-cell analyses of renal cell cancers reveal insights into tumor microenvironment, cell of origin, and therapy response
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+4
T cell
Kidney
Kidney
43-year-old stage
43-year-old stage
Chromophobe renal cell carcinoma
Chromophobe renal cell carcinoma
Female
Female
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
T cell
Macrophage
Abnormal cell
Vascular associated smooth muscle cell
Endothelial cell
Tissue
Kidney
Developmental stage
43-year-old stage
Disease
Chromophobe renal cell carcinoma
Sex
Female
Technology
10x 3' v2
Suspension type
Cell
Related Links
HumanCellAtlas:7c599029-7a3c-4b5c-8e79-e72c9a9a65fe
CELLxGENE
2,576 cells
•
Reichart et al., 2022
Pathogenic variants damage cell composition and single cell transcription in cardiomyopathies
Explore
h5ad
Homo sapiens
Homo sapiens
Adipocyte
Adipocyte
Heart left ventricle
+3
Heart left ventricle
Fourth decade stage
+7
Fourth decade stage
Dilated cardiomyopathy
+3
Dilated cardiomyopathy
Female
+1
Female
10x 3' v2
+1
10x 3' v2
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Adipocyte
Tissue
Heart left ventricle
Heart right ventricle
Interventricular septum
Apex of heart
Developmental stage
Fourth decade stage
Seventh decade stage
Postnatal stage
Fifth decade stage
Pediatric stage
Sixth decade stage
Eighth decade stage
Third decade stage
Disease
Dilated cardiomyopathy
Arrhythmogenic right ventricular cardiomyopathy
Normal
Non-compaction cardiomyopathy
Sex
Female
Male
Technology
10x 3' v2
10x 3' v3
Suspension type
Nucleus
Related Links
Zenodo record:6962685#.YuyuihxBzKE
EGA Study:EGAS00001006374
Github:heiniglab/DCM_heart_cell_atlas
CELLxGENE
2,575 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Cerebral cortex endothelial cell
Cerebral cortex endothelial cell
Dorsolateral prefrontal cortex
Dorsolateral prefrontal cortex
42-year-old stage
+20
42-year-old stage
Dementia
+1
Dementia
Female
+1
Female
10x multiome
+1
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Cerebral cortex endothelial cell
Tissue
Dorsolateral prefrontal cortex
Developmental stage
42-year-old stage
68-year-old stage
88-year-old stage
86-year-old stage
82-year-old stage
83-year-old stage
75-year-old stage
80-year-old stage
77-year-old stage
89-year-old stage
78-year-old stage
72-year-old stage
80 year-old and over stage
81-year-old stage
87-year-old stage
84-year-old stage
85-year-old stage
50-year-old stage
29-year-old stage
69-year-old stage
70-year-old stage
Disease
Dementia
Normal
Sex
Female
Male
Technology
10x multiome
10x 3' v3
Suspension type
Nucleus
Related Links
Alzheimer's Disease Research Center
Adult Changes in Thought Study
Allen Brain Map:seattle-alzheimers-disease
AWS Open Data:allen-sea-ad-atlas
BRaIN-lab
AD knowledge portal:syn26223298
CELLxGENE
2,574 cells
•
Moorman et al., 2025
Author Correction: Progressive plasticity during colorectal cancer metastasis
Explore
h5ad
Homo sapiens
Homo sapiens
Malignant cell
Malignant cell
Liver
+1
Liver
50-year-old stage
50-year-old stage
Colorectal cancer
Colorectal cancer
Male
Male
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Malignant cell
Tissue
Liver
Sigmoid colon
Developmental stage
50-year-old stage
Disease
Colorectal cancer
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
Github:dpeerlab/progressive-plasticity-crc-metastasis.git
Single Cell Portal
2,573 cells
Explore
Mus musculus
Mus musculus
Oligodendrocyte
+4
Oligodendrocyte
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Oligodendrocyte
Obsolete excitatory neuron
Brain microvascular endothelial cell
Obsolete inhibitory neuron
Astrocyte of the cerebellum
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD719) (section 197)
Corresponding registered brain section (MD719) (section 198)
CELLxGENE
2,567 cells
•
Sampath Kumar et al., 2023
Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis
Explore
h5ad
Mus musculus
Mus musculus
Notochordal cell
+15
Notochordal cell
Embryo
Embryo
Theiler stage 14
Theiler stage 14
Normal
Normal
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Notochordal cell
Spinal cord interneuron
Paraxial cell
Neurectodermal cell
Gut endothelial cell
Splanchnic mesodermal cell
Hemangioblast
Cardiac valve cell
Endodermal cell
Primitive red blood cell
Midbrain dopaminergic neuron
Anterior visceral endoderm cell
Premigratory neural crest cell
Mesodermal cell
Neuroplacodal cell
Surface ectodermal cell
Tissue
Embryo
Developmental stage
Theiler stage 14
Disease
Normal
Sex
Technology
Slide-seqv2
Suspension type
Related Links
Chen Lab
GEO series:GSE197353
figshare.com
FigShare Dataset:E8_5_Embryo2_h5ad/21695849/1
FigShare Dataset:E9_0_Embryo_h5ad/21695879/1
CELLxGENE
2,552 cells
•
Apostolov et al., 2024
Profiling of epithelial functional states and fibroblast phenotypes in hormone therapy-naïve localised prostate cancer
Explore
h5ad
Homo sapiens
Homo sapiens
Fibroblast of connective tissue of prostate
Fibroblast of connective tissue of prostate
Prostate gland
Prostate gland
62-year-old stage
+14
62-year-old stage
Prostatic acinar adenocarcinoma
Prostatic acinar adenocarcinoma
Male
Male
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Fibroblast of connective tissue of prostate
Tissue
Prostate gland
Developmental stage
62-year-old stage
54-year-old stage
59-year-old stage
64-year-old stage
46-year-old stage
68-year-old stage
60-year-old stage
75-year-old stage
63-year-old stage
61-year-old stage
72-year-old stage
45-year-old stage
69-year-old stage
70-year-old stage
71-year-old stage
Disease
Prostatic acinar adenocarcinoma
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
GEO series:GSE145843
CELLxGENE
2,544 cells
•
Enge et al., 2017
Single-Cell Analysis of Human Pancreas Reveals Transcriptional Signatures of Aging and Somatic Mutation Patterns
Explore
h5ad
Homo sapiens
Homo sapiens
Type a enteroendocrine cell
+5
Type a enteroendocrine cell
Islet of langerhans
Islet of langerhans
38-year-old stage
+7
38-year-old stage
Normal
Normal
Female
+1
Female
Smart-seq2
Smart-seq2
Cell
Cell
Organism
Homo sapiens
Cell type
Type a enteroendocrine cell
Type b pancreatic cell
Mesenchymal cell
Type d enteroendocrine cell
Pancreatic ductal cell
Acinar cell
Tissue
Islet of langerhans
Developmental stage
38-year-old stage
54-year-old stage
21-year-old stage
5-year-old stage
6-year-old stage
1-month-old stage
44-year-old stage
22-year-old stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
Suspension type
Cell
Related Links
GEO series:GSE81547
HumanCellAtlas:cddab57b-6868-4be4-806f-395ed9dd635a
UCSC Cell Browser:adultPancreas
cirm.ucsc.edu
Single Cell Expression Atlas Experiment:E-GEOD-81547
CELLxGENE
2,526 cells
•
de Morree et al., 2025
A molecular cell atlas of mouse lemur, an emerging model primate
Explore
h5ad
Microcebus murinus
Microcebus murinus
Plasmacytoid dendritic cell
+30
Plasmacytoid dendritic cell
Hypothalamus-pituitary axis
Hypothalamus-pituitary axis
Post-juvenile adult stage
Post-juvenile adult stage
Normal
Normal
Male
Male
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Microcebus murinus
Cell type
Plasmacytoid dendritic cell
Oligodendrocyte
Astrocyte
Endothelial cell of sinusoid
Erythroid lineage cell
Thyrotroph
Erythroid progenitor cell
Oligodendrocyte precursor cell
Corticotroph
B cell
Leptomeningeal cell
Ependymal cell
Gonadtroph
Somatotroph
Pericyte
Conventional dendritic cell
Neutrophil
Lymphocyte
Monocyte
Granulocyte monocyte progenitor cell
Neuroendocrine cell
Macrophage
Gabaergic neuron
Vascular associated smooth muscle cell
Mammotroph
Capillary endothelial cell
Hematopoietic precursor cell
Basophil
Fibroblast
Plasma cell
Megakaryocyte progenitor cell
Tissue
Hypothalamus-pituitary axis
Developmental stage
Post-juvenile adult stage
Disease
Normal
Sex
Male
Technology
10x 3' v2
Suspension type
Cell
Related Links
tabula-microcebus.sf.czbiohub.org
app.globus.org
UCSC Cell Browser:tabula-microcebus
CELLxGENE
2,489 cells
•
Szabo et al., 2021
Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19
Explore
h5ad
Homo sapiens
Homo sapiens
B cell
+6
B cell
Respiratory airway
Respiratory airway
49-year-old stage
49-year-old stage
Covid-19
Covid-19
Male
Male
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
B cell
Neutrophil
Mature nk t cell
Ionocyte
Epithelial cell
Mast cell
Myeloid cell
Tissue
Respiratory airway
Developmental stage
49-year-old stage
Disease
Covid-19
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
Mendeley Data Dataset:fm7v43jrbk/2
COVID-19 cell atlas
Github:simslab/cluster_diffex2018
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