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934
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679
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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
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2515
datasets
CELLxGENE
4,992 cells
•
Li et al., 2022
Mapping single-cell transcriptomes in the intra-tumoral and associated territories of kidney cancer
Explore
h5ad
Homo sapiens
Homo sapiens
Podocyte
+17
Podocyte
Kidney
Kidney
Sixth decade stage
Sixth decade stage
Nonpapillary renal cell carcinoma
Nonpapillary renal cell carcinoma
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Podocyte
Natural killer cell
Endothelial cell of lymphatic vessel
Endothelial cell
Cd8-positive, alpha-beta t cell
Iga plasma cell
Igg plasma cell
Epithelial cell of proximal tubule segment 1
Macrophage
Kidney collecting duct principal cell
Kidney connecting tubule principal cell
Kidney loop of henle thick ascending limb epithelial cell
Pericyte
Naive thymus-derived cd4-positive, alpha-beta t cell
Collagen secreting cell
Kidney loop of henle ascending limb epithelial cell
Conventional dendritic cell
Fibroblast
Tissue
Kidney
Developmental stage
Sixth decade stage
Disease
Nonpapillary renal cell carcinoma
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Single cell RNA sequencing and spatial transcriptomics data
Single cell RNA sequencing data (EGAD00001008030)
Spatial transcriptomic data (EGAD00001008781)
Code and pipeline for deSCeRNAmut
Online web portal
Analysis scripts
data.humancellatlas.org
CELLxGENE
4,992 cells
•
Li et al., 2022
Mapping single-cell transcriptomes in the intra-tumoral and associated territories of kidney cancer
Explore
h5ad
Homo sapiens
Homo sapiens
Podocyte
+18
Podocyte
Kidney
Kidney
Seventh decade stage
Seventh decade stage
Nonpapillary renal cell carcinoma
Nonpapillary renal cell carcinoma
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Podocyte
Endothelial cell of lymphatic vessel
Endothelial cell
Mast cell
Cd8-positive, alpha-beta t cell
Iga plasma cell
Epithelial cell of proximal tubule
Igg plasma cell
Epithelial cell of proximal tubule segment 1
Macrophage
Kidney collecting duct principal cell
Kidney connecting tubule principal cell
Kidney loop of henle thick ascending limb epithelial cell
Mhc-ii-positive classical monocyte
Naive thymus-derived cd4-positive, alpha-beta t cell
Collagen secreting cell
Kidney loop of henle ascending limb epithelial cell
Fibroblast
Non-classical monocyte
Tissue
Kidney
Developmental stage
Seventh decade stage
Disease
Nonpapillary renal cell carcinoma
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Single cell RNA sequencing and spatial transcriptomics data
Single cell RNA sequencing data (EGAD00001008030)
Spatial transcriptomic data (EGAD00001008781)
Code and pipeline for deSCeRNAmut
Online web portal
Analysis scripts
data.humancellatlas.org
CELLxGENE
4,992 cells
•
Li et al., 2022
Mapping single-cell transcriptomes in the intra-tumoral and associated territories of kidney cancer
Explore
h5ad
Homo sapiens
Homo sapiens
Epithelial cell of proximal tubule segment 1
+7
Epithelial cell of proximal tubule segment 1
Kidney
Kidney
Sixth decade stage
Sixth decade stage
Nonpapillary renal cell carcinoma
Nonpapillary renal cell carcinoma
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Epithelial cell of proximal tubule segment 1
Macrophage
Kidney pelvis urothelial cell
Kidney loop of henle thick ascending limb epithelial cell
Epithelial cell of proximal tubule segment 3
Naive thymus-derived cd4-positive, alpha-beta t cell
Collagen secreting cell
Fibroblast
Tissue
Kidney
Developmental stage
Sixth decade stage
Disease
Nonpapillary renal cell carcinoma
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Single cell RNA sequencing and spatial transcriptomics data
Single cell RNA sequencing data (EGAD00001008030)
Spatial transcriptomic data (EGAD00001008781)
Code and pipeline for deSCeRNAmut
Online web portal
Analysis scripts
data.humancellatlas.org
CELLxGENE
4,992 cells
•
Li et al., 2022
Mapping single-cell transcriptomes in the intra-tumoral and associated territories of kidney cancer
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell
+7
Endothelial cell
Kidney
Kidney
Eighth decade stage
Eighth decade stage
Nonpapillary renal cell carcinoma
Nonpapillary renal cell carcinoma
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Endothelial cell
Epithelial cell of proximal tubule
Epithelial cell of proximal tubule segment 1
Macrophage
Kidney loop of henle thick ascending limb epithelial cell
Pericyte
Naive thymus-derived cd4-positive, alpha-beta t cell
Fibroblast
Tissue
Kidney
Developmental stage
Eighth decade stage
Disease
Nonpapillary renal cell carcinoma
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Single cell RNA sequencing and spatial transcriptomics data
Single cell RNA sequencing data (EGAD00001008030)
Spatial transcriptomic data (EGAD00001008781)
Code and pipeline for deSCeRNAmut
Online web portal
Analysis scripts
data.humancellatlas.org
CELLxGENE
4,992 cells
•
Li et al., 2022
Mapping single-cell transcriptomes in the intra-tumoral and associated territories of kidney cancer
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell
+13
Endothelial cell
Kidney
Kidney
Sixth decade stage
Sixth decade stage
Nonpapillary renal cell carcinoma
Nonpapillary renal cell carcinoma
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Endothelial cell
Cd8-positive, alpha-beta t cell
Iga plasma cell
Epithelial cell of proximal tubule
Epithelial cell of proximal tubule segment 1
Macrophage
Kidney loop of henle thick ascending limb epithelial cell
Mhc-ii-positive classical monocyte
Epithelial cell of proximal tubule segment 3
Pericyte
Naive thymus-derived cd4-positive, alpha-beta t cell
Collagen secreting cell
Conventional dendritic cell
Fibroblast
Tissue
Kidney
Developmental stage
Sixth decade stage
Disease
Nonpapillary renal cell carcinoma
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Single cell RNA sequencing and spatial transcriptomics data
Single cell RNA sequencing data (EGAD00001008030)
Spatial transcriptomic data (EGAD00001008781)
Code and pipeline for deSCeRNAmut
Online web portal
Analysis scripts
data.humancellatlas.org
CELLxGENE
4,992 cells
•
Li et al., 2022
Mapping single-cell transcriptomes in the intra-tumoral and associated territories of kidney cancer
Explore
h5ad
Homo sapiens
Homo sapiens
Podocyte
+19
Podocyte
Kidney
Kidney
Eighth decade stage
Eighth decade stage
Nonpapillary renal cell carcinoma
Nonpapillary renal cell carcinoma
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Podocyte
Natural killer cell
Endothelial cell
Cd8-positive, alpha-beta t cell
Activated type ii nk t cell
Classical monocyte
Epithelial cell of proximal tubule
Epithelial cell
Epithelial cell of proximal tubule segment 1
Macrophage
Kidney collecting duct principal cell
Kidney connecting tubule principal cell
Kidney loop of henle thick ascending limb epithelial cell
Mhc-ii-positive classical monocyte
Epithelial cell of proximal tubule segment 3
Pericyte
Naive thymus-derived cd4-positive, alpha-beta t cell
Collagen secreting cell
Kidney loop of henle ascending limb epithelial cell
Fibroblast
Tissue
Kidney
Developmental stage
Eighth decade stage
Disease
Nonpapillary renal cell carcinoma
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Single cell RNA sequencing and spatial transcriptomics data
Single cell RNA sequencing data (EGAD00001008030)
Spatial transcriptomic data (EGAD00001008781)
Code and pipeline for deSCeRNAmut
Online web portal
Analysis scripts
data.humancellatlas.org
CELLxGENE
4,992 cells
•
Li et al., 2022
Mapping single-cell transcriptomes in the intra-tumoral and associated territories of kidney cancer
Explore
h5ad
Homo sapiens
Homo sapiens
Podocyte
+17
Podocyte
Kidney
Kidney
Seventh decade stage
Seventh decade stage
Nonpapillary renal cell carcinoma
Nonpapillary renal cell carcinoma
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Podocyte
Natural killer cell
Endothelial cell of lymphatic vessel
Endothelial cell
Iga plasma cell
Classical monocyte
Epithelial cell of proximal tubule
Epithelial cell of proximal tubule segment 1
Macrophage
Kidney collecting duct principal cell
Kidney connecting tubule principal cell
Kidney loop of henle thick ascending limb epithelial cell
Epithelial cell of proximal tubule segment 3
Pericyte
Naive thymus-derived cd4-positive, alpha-beta t cell
Collagen secreting cell
Kidney loop of henle ascending limb epithelial cell
Fibroblast
Tissue
Kidney
Developmental stage
Seventh decade stage
Disease
Nonpapillary renal cell carcinoma
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Single cell RNA sequencing and spatial transcriptomics data
Single cell RNA sequencing data (EGAD00001008030)
Spatial transcriptomic data (EGAD00001008781)
Code and pipeline for deSCeRNAmut
Online web portal
Analysis scripts
data.humancellatlas.org
CELLxGENE
4,992 cells
•
Li et al., 2022
Mapping single-cell transcriptomes in the intra-tumoral and associated territories of kidney cancer
Explore
h5ad
Homo sapiens
Homo sapiens
Podocyte
+17
Podocyte
Kidney
Kidney
Sixth decade stage
Sixth decade stage
Nonpapillary renal cell carcinoma
Nonpapillary renal cell carcinoma
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Podocyte
Renal beta-intercalated cell
Endothelial cell
Cd8-positive, alpha-beta t cell
Iga plasma cell
Igg plasma cell
Epithelial cell of proximal tubule segment 1
Renal alpha-intercalated cell
Macrophage
Kidney distal convoluted tubule epithelial cell
Kidney pelvis urothelial cell
Kidney collecting duct principal cell
Kidney connecting tubule principal cell
Kidney loop of henle thick ascending limb epithelial cell
Naive thymus-derived cd4-positive, alpha-beta t cell
Collagen secreting cell
Kidney loop of henle ascending limb epithelial cell
Fibroblast
Tissue
Kidney
Developmental stage
Sixth decade stage
Disease
Nonpapillary renal cell carcinoma
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Single cell RNA sequencing and spatial transcriptomics data
Single cell RNA sequencing data (EGAD00001008030)
Spatial transcriptomic data (EGAD00001008781)
Code and pipeline for deSCeRNAmut
Online web portal
Analysis scripts
data.humancellatlas.org
CELLxGENE
4,992 cells
•
Fawkner-Corbett et al., 2021
Spatiotemporal analysis of human intestinal development at single-cell resolution
Explore
h5ad
Homo sapiens
Homo sapiens
Transit amplifying cell of small intestine
+29
Transit amplifying cell of small intestine
Colon
Colon
66-year-old stage
66-year-old stage
Normal
Normal
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Transit amplifying cell of small intestine
Intestine goblet cell
Natural killer cell
Intestinal crypt stem cell of large intestine
Secretory cell
Neuroendocrine cell
Interstitial cell of cajal
Erythroid lineage cell
Leukocyte
Gut absorptive cell
Inhibitory motor neuron
Plasmacytoid dendritic cell
Neural cell
Enteroendocrine cell
Gut endothelial cell
Group 3 innate lymphoid cell
Transit amplifying cell of colon
Macrophage
Enteric smooth muscle cell
Glial cell
Enterocyte
Motor neuron
B cell
Pericyte
Progenitor cell
Naive t cell
Intestinal crypt stem cell of small intestine
Myofibroblast cell
Fibroblast
Dendritic cell
Tissue
Colon
Developmental stage
66-year-old stage
Disease
Normal
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
GSE158328
simmonslab.shinyapps.io
Supplementary data
dropbox.com
GSE158702
explore.data.humancellatlas.org
CELLxGENE
4,992 cells
•
Fawkner-Corbett et al., 2021
Spatiotemporal analysis of human intestinal development at single-cell resolution
Explore
h5ad
Homo sapiens
Homo sapiens
Transit amplifying cell of small intestine
+24
Transit amplifying cell of small intestine
Colon
Colon
20th week post-fertilization stage
20th week post-fertilization stage
Normal
Normal
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Transit amplifying cell of small intestine
Intestine goblet cell
Intestinal crypt stem cell of large intestine
Secretory cell
Neuroendocrine cell
Interstitial cell of cajal
Erythroid lineage cell
Leukocyte
Gut absorptive cell
Inhibitory motor neuron
Precursor b cell
Enteroendocrine cell
Gut endothelial cell
Transit amplifying cell of colon
Macrophage
Enteric smooth muscle cell
Enterocyte
Motor neuron
Interneuron
Pericyte
Progenitor cell
Intestinal crypt stem cell of small intestine
Monocyte
Myofibroblast cell
Fibroblast
Tissue
Colon
Developmental stage
20th week post-fertilization stage
Disease
Normal
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
GSE158328
simmonslab.shinyapps.io
Supplementary data
dropbox.com
GSE158702
explore.data.humancellatlas.org
CELLxGENE
4,992 cells
•
Fawkner-Corbett et al., 2021
Spatiotemporal analysis of human intestinal development at single-cell resolution
Explore
h5ad
Homo sapiens
Homo sapiens
Transit amplifying cell of small intestine
+19
Transit amplifying cell of small intestine
Ileum
Ileum
13th week post-fertilization stage
13th week post-fertilization stage
Normal
Normal
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Transit amplifying cell of small intestine
Intestine goblet cell
Intestinal crypt stem cell of large intestine
Secretory cell
Neuroendocrine cell
Interstitial cell of cajal
Leukocyte
Inhibitory motor neuron
Gut endothelial cell
Transit amplifying cell of colon
Macrophage
Enteric smooth muscle cell
Enterocyte
Interneuron
Pericyte
Progenitor cell
Intestinal crypt stem cell of small intestine
Myofibroblast cell
Fibroblast
Dendritic cell
Tissue
Ileum
Developmental stage
13th week post-fertilization stage
Disease
Normal
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
GSE158328
simmonslab.shinyapps.io
Supplementary data
dropbox.com
GSE158702
explore.data.humancellatlas.org
CELLxGENE
4,992 cells
•
Fawkner-Corbett et al., 2021
Spatiotemporal analysis of human intestinal development at single-cell resolution
Explore
h5ad
Homo sapiens
Homo sapiens
Transit amplifying cell of small intestine
+18
Transit amplifying cell of small intestine
Colon
Colon
13th week post-fertilization stage
13th week post-fertilization stage
Normal
Normal
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Transit amplifying cell of small intestine
Intestine goblet cell
Intestinal crypt stem cell of large intestine
Interstitial cell of cajal
Gut absorptive cell
Inhibitory motor neuron
Enteroendocrine cell
Gut endothelial cell
Transit amplifying cell of colon
Enteric smooth muscle cell
Glial cell
Enterocyte
Interneuron
Mesothelial cell
Pericyte
Progenitor cell
Intestinal crypt stem cell of small intestine
Myofibroblast cell
Fibroblast
Tissue
Colon
Developmental stage
13th week post-fertilization stage
Disease
Normal
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
GSE158328
simmonslab.shinyapps.io
Supplementary data
dropbox.com
GSE158702
explore.data.humancellatlas.org
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