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Cell Type
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Tissue
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Disease
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Technology
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Cell
893
Nucleus
659
Data Source
0
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Asap
43
Bgee
40
Cellxgene
2,077
Single cell portal
179
Sort
Most cells
Fewest cells
2339
datasets
CELLxGENE
2,872 cells
•
Sampath Kumar et al., 2023
Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis
Explore
h5ad
Mus musculus
Mus musculus
Notochordal cell
+15
Notochordal cell
Embryo
Embryo
Theiler stage 14
Theiler stage 14
Normal
Normal
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Notochordal cell
Spinal cord interneuron
Paraxial cell
Neurectodermal cell
Gut endothelial cell
Splanchnic mesodermal cell
Hemangioblast
Cardiac valve cell
Endodermal cell
Primitive red blood cell
Midbrain dopaminergic neuron
Anterior visceral endoderm cell
Premigratory neural crest cell
Mesodermal cell
Neuroplacodal cell
Surface ectodermal cell
Tissue
Embryo
Developmental stage
Theiler stage 14
Disease
Normal
Sex
Technology
Slide-seqv2
Suspension type
Related Links
Chen Lab
GEO series:GSE197353
figshare.com
FigShare Dataset:E8_5_Embryo2_h5ad/21695849/1
FigShare Dataset:E9_0_Embryo_h5ad/21695879/1
CELLxGENE
2,868 cells
•
Yan et al., 2020
Cell Atlas of The Human Fovea and Peripheral Retina
Explore
h5ad
Homo sapiens
Homo sapiens
Retina horizontal cell
Retina horizontal cell
Fovea centralis
+1
Fovea centralis
64-year-old stage
+6
64-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v2
+1
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Retina horizontal cell
Tissue
Fovea centralis
Peripheral region of retina
Developmental stage
64-year-old stage
60-year-old stage
74-year-old stage
78-year-old stage
65-year-old stage
53-year-old stage
69-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v2
10x 3' v3
Suspension type
Cell
Related Links
GEO series:GSE148077
HumanCellAtlas:30dc3964-1135-4b56-b393-ce2dcbc6e379
BroadInstitute Single-Cell Portal:SCP839/cell-atlas-of-the-human-fovea-and-peripheral-retina
CELLxGENE
2,859 cells
•
Almanzar et al., 2020
A single-cell transcriptomic atlas characterizes ageing tissues in the mouse
Explore
h5ad
Mus musculus
Mus musculus
Natural killer cell
+10
Natural killer cell
Liver
Liver
20-month-old stage and over
+2
20-month-old stage and over
Normal
Normal
Female
+1
Female
Smart-seq2
Smart-seq2
Cell
Cell
Organism
Mus musculus
Cell type
Natural killer cell
Hepatocyte
Endothelial cell of hepatic sinusoid
T cell
B cell
Neutrophil
Kupffer cell
Mature nk t cell
Cd4-positive, alpha-beta t cell
Cd8-positive, alpha-beta t cell
Myeloid leukocyte
Tissue
Liver
Developmental stage
20-month-old stage and over
18-month-old stage
3-month-old stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
Suspension type
Cell
Related Links
GEO series:GSE132042
CZ BioHub Portal:tabula-muris-senis
protocols.io:smartseq2-for-htp-generation-of-facs-sorted-single-2uwgexe
Github:czbiohub/tabula-muris-senis
FigShare Dataset:Processed_files_to_use_with_scanpy_/8273102/2
CELLxGENE
2,834 cells
•
Szabo et al., 2021
Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19
Explore
h5ad
Homo sapiens
Homo sapiens
B cell
+5
B cell
Respiratory airway
Respiratory airway
74-year-old stage
74-year-old stage
Covid-19
Covid-19
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
B cell
Neutrophil
Mature nk t cell
Ionocyte
Epithelial cell
Myeloid cell
Tissue
Respiratory airway
Developmental stage
74-year-old stage
Disease
Covid-19
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
Mendeley Data Dataset:fm7v43jrbk/2
COVID-19 cell atlas
Github:simslab/cluster_diffex2018
CELLxGENE
2,833 cells
•
Fawkner-Corbett et al., 2021
Spatiotemporal analysis of human intestinal development at single-cell resolution
Explore
h5ad
Homo sapiens
Homo sapiens
Myofibroblast cell
+1
Myofibroblast cell
Colon
+1
Colon
14th week post-fertilization stage
+9
14th week post-fertilization stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Myofibroblast cell
Mesothelial cell
Tissue
Colon
Ileum
Developmental stage
14th week post-fertilization stage
16th week post-fertilization stage
11th week post-fertilization stage
21st week post-fertilization stage
Carnegie stage 22
23rd week post-fertilization stage
19th week post-fertilization stage
13th week post-fertilization stage
18th week post-fertilization stage
17th week post-fertilization stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
GEO series:GSE158328
simmonslab.shinyapps.io
Mendeley Data Dataset:gncg57p5x9/2
dropbox.com
HumanCellAtlas:fa3f460f-4fb9-4ced-b548-8ba6a8ecae3f
GEO series:GSE158702
CELLxGENE
2,798 cells
•
Ulrich et al., 2021
Cellular heterogeneity of human fallopian tubes in normal and hydrosalpinx disease states identified by scRNA-seq
Explore
h5ad
Homo sapiens
Homo sapiens
Ciliated epithelial cell
Ciliated epithelial cell
Ampulla of fallopian tube
+3
Ampulla of fallopian tube
31-year-old stage
+3
31-year-old stage
Normal
Normal
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Ciliated epithelial cell
Tissue
Ampulla of fallopian tube
Isthmus of fallopian tube
Fallopian tube
Fimbria of fallopian tube
Developmental stage
31-year-old stage
30-year-old stage
46-year-old stage
52-year-old stage
Disease
Normal
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
HumanCellAtlas:21ea8ddb-525f-4f1f-a820-31f0360399a2
GEO series:GSE178101
CELLxGENE
2,743 cells
•
Apostolov et al., 2024
Profiling of epithelial functional states and fibroblast phenotypes in hormone therapy-naïve localised prostate cancer
Explore
h5ad
Homo sapiens
Homo sapiens
Plasmacytoid dendritic cell
+4
Plasmacytoid dendritic cell
Prostate gland
Prostate gland
62-year-old stage
+14
62-year-old stage
Prostatic acinar adenocarcinoma
Prostatic acinar adenocarcinoma
Male
Male
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Plasmacytoid dendritic cell
Monocyte
Macrophage
Mast cell
Myeloid cell
Tissue
Prostate gland
Developmental stage
62-year-old stage
54-year-old stage
59-year-old stage
64-year-old stage
46-year-old stage
68-year-old stage
60-year-old stage
75-year-old stage
63-year-old stage
61-year-old stage
72-year-old stage
45-year-old stage
69-year-old stage
70-year-old stage
71-year-old stage
Disease
Prostatic acinar adenocarcinoma
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
GEO series:GSE145843
CELLxGENE
2,698 cells
•
Gu et al., 2024
Immune microniches shape intestinal Treg function
Explore
h5ad
Mus musculus
Mus musculus
Naive thymus-derived cd4-positive, alpha-beta t cell
+7
Naive thymus-derived cd4-positive, alpha-beta t cell
Lamina propria of small intestine
+3
Lamina propria of small intestine
Prime adult stage
Prime adult stage
Normal
Normal
10x 5' v2
10x 5' v2
Cell
Cell
Organism
Mus musculus
Cell type
Naive thymus-derived cd4-positive, alpha-beta t cell
T-helper 17 cell
Regulatory t cell
Cd4-positive, alpha-beta memory t cell
Gamma-delta t cell
Group 2 innate lymphoid cell
Naive thymus-derived cd8-positive, alpha-beta t cell
Group 3 innate lymphoid cell
Tissue
Lamina propria of small intestine
Caecum
Mesenteric lymph node
Small intestine peyer's patch
Developmental stage
Prime adult stage
Disease
Normal
Sex
Technology
10x 5' v2
Suspension type
Cell
Related Links
ENA Project:PRJEB57700
Sanger Dataset:treg-gut-niches
CELLxGENE
2,693 cells
•
Gu et al., 2024
Immune microniches shape intestinal Treg function
Explore
h5ad
Mus musculus
Mus musculus
Plasmacytoid dendritic cell
+6
Plasmacytoid dendritic cell
Lamina propria of small intestine
+3
Lamina propria of small intestine
Prime adult stage
Prime adult stage
Normal
Normal
10x 5' v2
10x 5' v2
Cell
Cell
Organism
Mus musculus
Cell type
Plasmacytoid dendritic cell
Dendritic cell
Cd8-alpha-positive cd11b-negative dendritic cell
Conventional dendritic cell
Monocyte
Macrophage
Cd103-positive dendritic cell
Tissue
Lamina propria of small intestine
Caecum
Mesenteric lymph node
Small intestine peyer's patch
Developmental stage
Prime adult stage
Disease
Normal
Sex
Technology
10x 5' v2
Suspension type
Cell
Related Links
Sanger Dataset:treg-gut-niches
ENA Project:PRJEB57700
CELLxGENE
2,685 cells
•
The Tabula Sapiens Consortium* et al., 2022
The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans
Explore
h5ad
Homo sapiens
Homo sapiens
Retinal ganglion cell
+6
Retinal ganglion cell
Ascending colon
+15
Ascending colon
59-year-old stage
+7
59-year-old stage
Normal
Normal
Female
+1
Female
Smart-seq2
+1
Smart-seq2
Cell
Cell
Organism
Homo sapiens
Cell type
Retinal ganglion cell
Retinal bipolar neuron
Neuron
Retina horizontal cell
Enteroglial cell
Eye photoreceptor cell
Radial glial cell
Tissue
Ascending colon
Anterior segment of eyeball
Eye
Sclera
Heart right ventricle
Lacrimal gland
Heart
Sigmoid colon
Small intestine
Posterior segment of eyeball
Large intestine
Retinal neural layer
Duodenum
Cornea
Right cardiac atrium
Ileum
Developmental stage
59-year-old stage
46-year-old stage
56-year-old stage
57-year-old stage
60-year-old stage
45-year-old stage
37-year-old stage
40-year-old stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
10x 3' v3
Suspension type
Cell
Related Links
AWS Open Data:tabula-sapiens
CZ BioHub Portal:tabula-sapiens-portal
HumanCellAtlas:10201832-7c73-4033-9b65-3ef13d81656a
UCSC Cell Browser:tabula-sapiens
DOI:10.1101/2024.12.03.626516
UCSC Genome Browser:hgTrackUi?hgsid=1437536541_FfasmBrAlAiA7oFphu1csVv0KHgc&db=hg38&c=chrX&g=tabulaSapiens
CELLxGENE
2,642 cells
•
Anderson-Crannage et al., 2023
Inflammation-mediated fibroblast activation and immune dysregulation in collagen VII-deficient skin
Explore
h5ad
Mus musculus
Mus musculus
Keratinocyte
Keratinocyte
Autopod skin
Autopod skin
2-week-old stage
2-week-old stage
Epidermolysis bullosa
+1
Epidermolysis bullosa
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Mus musculus
Cell type
Keratinocyte
Tissue
Autopod skin
Developmental stage
2-week-old stage
Disease
Epidermolysis bullosa
Normal
Sex
Technology
10x 3' v3
Suspension type
Cell
Related Links
GEO series:GSE222250
Single Cell Portal
2,601 cells
Explore
Mus musculus
Mus musculus
Astrocyte
+3
Astrocyte
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Astrocyte
Obsolete excitatory neuron
Oligodendrocyte precursor cell
Obsolete inhibitory neuron
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD705) (section 107)
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