Mus musculus

Notochordal cell Spinal cord interneuron Paraxial cell Neurectodermal cell Gut endothelial cell Splanchnic mesodermal cell Hemangioblast Cardiac valve cell Endodermal cell Primitive red blood cell Midbrain dopaminergic neuron Anterior visceral endoderm cell Premigratory neural crest cell Mesodermal cell Neuroplacodal cell Surface ectodermal cell

Embryo

Theiler stage 14

Normal

Slide-seqv2

Homo sapiens

Schwann cell Melanocyte Neural crest cell

Cranial neural crest

Carnegie stage 12 Carnegie stage 20 Carnegie stage 16 Carnegie stage 14 Carnegie stage 13 Carnegie stage 17

Normal

Female Male

10x multiome

Nucleus

Mus musculus

Oligodendrocyte Astrocyte Obsolete excitatory neuron Microglial cell Oligodendrocyte precursor cell Brain microvascular endothelial cell Obsolete inhibitory neuron

Normal

10x 3' v2

Homo sapiens

Dendritic cell Monocyte Macrophage Mast cell

Esophagogastric junction Colon Submucosal esophageal gland Duodenum Cardia of stomach Body of stomach Ileum Rectum Lower esophagus

62-year-old stage 43-year-old stage 54-year-old stage 34-year-old stage 42-year-old stage 56-year-old stage 68-year-old stage 55-year-old stage 57-year-old stage 83-year-old stage 60-year-old stage 77-year-old stage 74-year-old stage 63-year-old stage 48-year-old stage 27-year-old stage 67-year-old stage 80 year-old and over stage 58-year-old stage 50-year-old stage 45-year-old stage 53-year-old stage 29-year-old stage 69-year-old stage 51-year-old stage 41-year-old stage

Gastritis Gastric intestinal metaplasia Barrett esophagus Normal

Female Male

10x 3' v2 10x 3' v3

Cell

Mus musculus

Basal cell Luminal epithelial cell of mammary gland Stromal cell Endothelial cell

Mammary gland

20-month-old stage and over 18-month-old stage 3-month-old stage

Normal

Female

Smart-seq2

Cell

Mus musculus

Oligodendrocyte Astrocyte Obsolete excitatory neuron Oligodendrocyte precursor cell Brain microvascular endothelial cell

Normal

10x 3' v2

Mus musculus

Notochordal cell Spinal cord interneuron Paraxial cell Neurectodermal cell Splanchnic mesodermal cell Hemangioblast Cardiac valve cell Endodermal cell Primitive red blood cell Midbrain dopaminergic neuron Anterior visceral endoderm cell Premigratory neural crest cell Mesodermal cell Neuroplacodal cell Surface ectodermal cell

Embryo

Theiler stage 14

Normal

Slide-seqv2

Homo sapiens

Naive b cell Memory b cell

Breast

43-year-old stage 54-year-old stage 49-year-old stage 55-year-old stage 88-year-old stage 82-year-old stage 57-year-old stage 60-year-old stage 35-year-old stage 63-year-old stage 67-year-old stage 47-year-old stage 52-year-old stage 58-year-old stage 85-year-old stage 50-year-old stage 73-year-old stage 41-year-old stage

Breast carcinoma Invasive ductal breast carcinoma Invasive lobular breast carcinoma

Female

10x 3' v2 10x 5' v1 10x 3' v3

Cell

Mus musculus

Notochordal cell Spinal cord interneuron Paraxial cell Neurectodermal cell Gut endothelial cell Splanchnic mesodermal cell Hemangioblast Cardiac valve cell Endodermal cell Primitive red blood cell Midbrain dopaminergic neuron Anterior visceral endoderm cell Premigratory neural crest cell Mesodermal cell Neuroplacodal cell Surface ectodermal cell

Embryo

Theiler stage 14

Normal

Slide-seqv2

Macaca mulatta

Serotonergic neuron

Corpus callosum Hippocampal formation Entorhinal cortex Brodmann (1909) area 19 Midbrain Pons Head of caudate nucleus Medial dorsal nucleus of thalamus Anterior cingulate cortex Primary visual cortex Dorsolateral prefrontal cortex Superior parietal cortex Superior temporal sulcus Primary auditory cortex Primary motor cortex Prefrontal cortex Ventral lateral nucleus of thalamus Nucleus accumbens Primary somatosensory cortex Cerebellar vermis Amygdala Medulla oblongata Cerebrocerebellum Inferior parietal cortex Perirhinal cortex Inferior temporal gyrus Lateral geniculate body

Prime adult stage Juvenile stage

Normal

Female Male

Sci-rna-seq3

Nucleus

Mus musculus

Multiciliated columnar cell of tracheobronchial tree T cell Smooth muscle cell of trachea Macrophage Keratinocyte Endothelial cell Granulocyte Chondrocyte Mucus secreting cell Fibroblast Basal epithelial cell of tracheobronchial tree

Trachea

20-month-old stage and over 18-month-old stage 3-month-old stage

Normal

Female Male

Smart-seq2

Cell

Mus musculus

Oligodendrocyte Obsolete excitatory neuron Brain microvascular endothelial cell

Normal

10x 3' v2