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934
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679
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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
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Most cells
Fewest cells
2515
datasets
CELLxGENE
4,992 cells
•
Fawkner-Corbett et al., 2021
Spatiotemporal analysis of human intestinal development at single-cell resolution
Explore
h5ad
Homo sapiens
Homo sapiens
Transit amplifying cell of small intestine
+27
Transit amplifying cell of small intestine
Colon
Colon
66-year-old stage
66-year-old stage
Normal
Normal
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Transit amplifying cell of small intestine
Intestine goblet cell
Intestinal crypt stem cell of large intestine
Secretory cell
Interstitial cell of cajal
Erythroid lineage cell
Leukocyte
Gut absorptive cell
Inhibitory motor neuron
Plasmacytoid dendritic cell
Neural cell
Enteroendocrine cell
Gut endothelial cell
Group 3 innate lymphoid cell
Transit amplifying cell of colon
Macrophage
Enteric smooth muscle cell
Glial cell
Enterocyte
B cell
Pericyte
Progenitor cell
Naive t cell
Intestinal crypt stem cell of small intestine
Monocyte
Myofibroblast cell
Fibroblast
Dendritic cell
Tissue
Colon
Developmental stage
66-year-old stage
Disease
Normal
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
GSE158328
simmonslab.shinyapps.io
Supplementary data
dropbox.com
GSE158702
explore.data.humancellatlas.org
CELLxGENE
4,992 cells
•
Fawkner-Corbett et al., 2021
Spatiotemporal analysis of human intestinal development at single-cell resolution
Explore
h5ad
Homo sapiens
Homo sapiens
Intestine goblet cell
+18
Intestine goblet cell
Ileum
Ileum
13th week post-fertilization stage
13th week post-fertilization stage
Normal
Normal
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Intestine goblet cell
Intestinal crypt stem cell of large intestine
Secretory cell
Neuroendocrine cell
Interstitial cell of cajal
Leukocyte
Gut absorptive cell
Gut endothelial cell
Group 3 innate lymphoid cell
Enteric smooth muscle cell
Enterocyte
Motor neuron
Interneuron
Pericyte
Progenitor cell
Intestinal crypt stem cell of small intestine
Monocyte
Myofibroblast cell
Fibroblast
Tissue
Ileum
Developmental stage
13th week post-fertilization stage
Disease
Normal
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
GSE158328
simmonslab.shinyapps.io
Supplementary data
dropbox.com
GSE158702
explore.data.humancellatlas.org
CELLxGENE
4,992 cells
•
Fawkner-Corbett et al., 2021
Spatiotemporal analysis of human intestinal development at single-cell resolution
Explore
h5ad
Homo sapiens
Homo sapiens
Intestine goblet cell
+19
Intestine goblet cell
Colon
Colon
13th week post-fertilization stage
13th week post-fertilization stage
Normal
Normal
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Intestine goblet cell
Intestinal crypt stem cell of large intestine
Secretory cell
Interstitial cell of cajal
Leukocyte
Gut absorptive cell
Inhibitory motor neuron
Neural cell
Gut endothelial cell
Transit amplifying cell of colon
Enteric smooth muscle cell
Glial cell
Enterocyte
Motor neuron
Mesothelial cell
Pericyte
Progenitor cell
Intestinal crypt stem cell of small intestine
Myofibroblast cell
Fibroblast
Tissue
Colon
Developmental stage
13th week post-fertilization stage
Disease
Normal
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
GSE158328
simmonslab.shinyapps.io
Supplementary data
dropbox.com
GSE158702
explore.data.humancellatlas.org
CELLxGENE
4,992 cells
•
Guilliams et al., 2022
Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches
Explore
h5ad
Homo sapiens
Homo sapiens
Hepatocyte
+11
Hepatocyte
Liver
Liver
68-year-old stage
68-year-old stage
Normal
Normal
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Hepatocyte
Plasmacytoid dendritic cell
Hepatic stellate cell
Macrophage
Endothelial cell of pericentral hepatic sinusoid
Cholangiocyte
Plasma cell
Vascular associated smooth muscle cell
Basophil
Conventional dendritic cell
Fibroblast
Non-classical monocyte
Tissue
Liver
Developmental stage
68-year-old stage
Disease
Normal
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
GSE192742
livercellatlas.org
explore.data.humancellatlas.org
CELLxGENE
4,992 cells
•
Guilliams et al., 2022
Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches
Explore
h5ad
Homo sapiens
Homo sapiens
Neutrophil
+8
Neutrophil
Liver
Liver
59-year-old stage
59-year-old stage
Normal
Normal
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Neutrophil
Hepatocyte
Endothelial cell of periportal hepatic sinusoid
Macrophage
Cholangiocyte
Plasma cell
Vascular associated smooth muscle cell
Basophil
Fibroblast
Tissue
Liver
Developmental stage
59-year-old stage
Disease
Normal
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
GSE192742
livercellatlas.org
explore.data.humancellatlas.org
CELLxGENE
4,992 cells
•
Guilliams et al., 2022
Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches
Explore
h5ad
Homo sapiens
Homo sapiens
Hepatocyte
+3
Hepatocyte
Liver
Liver
59-year-old stage
59-year-old stage
Normal
Normal
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Hepatocyte
Endothelial cell of periportal hepatic sinusoid
Macrophage
Cholangiocyte
Tissue
Liver
Developmental stage
59-year-old stage
Disease
Normal
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
GSE192742
livercellatlas.org
explore.data.humancellatlas.org
CELLxGENE
4,992 cells
•
Fawkner-Corbett et al., 2021
Spatiotemporal analysis of human intestinal development at single-cell resolution
Explore
h5ad
Homo sapiens
Homo sapiens
Intestine goblet cell
+21
Intestine goblet cell
Colon
Colon
13th week post-fertilization stage
13th week post-fertilization stage
Normal
Normal
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Intestine goblet cell
Intestinal crypt stem cell of large intestine
Interstitial cell of cajal
Leukocyte
Gut absorptive cell
Inhibitory motor neuron
Neural cell
Precursor b cell
Enteroendocrine cell
Gut endothelial cell
Group 3 innate lymphoid cell
Macrophage
Enteric smooth muscle cell
Glial cell
Enterocyte
Interneuron
Mesothelial cell
Pericyte
Naive t cell
Monocyte
Myofibroblast cell
Fibroblast
Tissue
Colon
Developmental stage
13th week post-fertilization stage
Disease
Normal
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
GSE158328
simmonslab.shinyapps.io
Supplementary data
dropbox.com
GSE158702
explore.data.humancellatlas.org
CELLxGENE
4,992 cells
•
Guilliams et al., 2022
Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches
Explore
h5ad
Mus musculus
Mus musculus
Hepatocyte
+3
Hepatocyte
Capsule of liver
Capsule of liver
Young adult stage
Young adult stage
Normal
Normal
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Mus musculus
Cell type
Hepatocyte
Erythrocyte
Mesothelial cell
Fibroblast
Tissue
Capsule of liver
Developmental stage
Young adult stage
Disease
Normal
Sex
Technology
Visium spatial gene expression v1
Suspension type
Related Links
GSE192742
livercellatlas.org
explore.data.humancellatlas.org
CELLxGENE
4,992 cells
•
Guilliams et al., 2022
Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches
Explore
h5ad
Mus musculus
Mus musculus
Endothelial cell of hepatic sinusoid
+17
Endothelial cell of hepatic sinusoid
Liver
Liver
10-month-old stage
10-month-old stage
Metabolic dysfunction-associated steatotic liver disease
Metabolic dysfunction-associated steatotic liver disease
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Mus musculus
Cell type
Endothelial cell of hepatic sinusoid
Neutrophil
Hepatocyte
Endothelial cell of periportal hepatic sinusoid
Erythrocyte
Kupffer cell
Intermediate monocyte
Plasmacytoid dendritic cell
Hepatic stellate cell
Macrophage
Endothelial cell of pericentral hepatic sinusoid
Cholangiocyte
Mesothelial cell
B cell
Peritoneal macrophage
Basophil
Conventional dendritic cell
Fibroblast
Tissue
Liver
Developmental stage
10-month-old stage
Disease
Metabolic dysfunction-associated steatotic liver disease
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
GSE192742
livercellatlas.org
explore.data.humancellatlas.org
CELLxGENE
4,992 cells
•
Guilliams et al., 2022
Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches
Explore
h5ad
Mus musculus
Mus musculus
Endothelial cell of hepatic sinusoid
+15
Endothelial cell of hepatic sinusoid
Liver
Liver
Young adult stage
Young adult stage
Normal
Normal
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Mus musculus
Cell type
Endothelial cell of hepatic sinusoid
Neutrophil
Hepatocyte
Endothelial cell of periportal hepatic sinusoid
Erythrocyte
Kupffer cell
Intermediate monocyte
Plasmacytoid dendritic cell
Hepatic stellate cell
Endothelial cell of pericentral hepatic sinusoid
Cholangiocyte
Hematopoietic stem cell
B cell
Peritoneal macrophage
Vascular associated smooth muscle cell
Fibroblast
Tissue
Liver
Developmental stage
Young adult stage
Disease
Normal
Sex
Technology
Visium spatial gene expression v1
Suspension type
Related Links
GSE192742
livercellatlas.org
explore.data.humancellatlas.org
CELLxGENE
4,992 cells
•
Li et al., 2022
Mapping single-cell transcriptomes in the intra-tumoral and associated territories of kidney cancer
Explore
h5ad
Homo sapiens
Homo sapiens
Podocyte
+16
Podocyte
Kidney
Kidney
Seventh decade stage
Seventh decade stage
Nonpapillary renal cell carcinoma
Nonpapillary renal cell carcinoma
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Podocyte
Endothelial cell of lymphatic vessel
Endothelial cell
Mast cell
Cd8-positive, alpha-beta t cell
Iga plasma cell
Epithelial cell of proximal tubule
Igg plasma cell
Epithelial cell of proximal tubule segment 1
Macrophage
Cd4-positive, alpha-beta t cell
Pericyte
Naive thymus-derived cd4-positive, alpha-beta t cell
Collagen secreting cell
Kidney loop of henle ascending limb epithelial cell
Conventional dendritic cell
Fibroblast
Tissue
Kidney
Developmental stage
Seventh decade stage
Disease
Nonpapillary renal cell carcinoma
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Single cell RNA sequencing and spatial transcriptomics data
Single cell RNA sequencing data (EGAD00001008030)
Spatial transcriptomic data (EGAD00001008781)
Code and pipeline for deSCeRNAmut
Online web portal
Analysis scripts
data.humancellatlas.org
CELLxGENE
4,992 cells
•
Li et al., 2022
Mapping single-cell transcriptomes in the intra-tumoral and associated territories of kidney cancer
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell
+11
Endothelial cell
Kidney
Kidney
Seventh decade stage
Seventh decade stage
Nonpapillary renal cell carcinoma
Nonpapillary renal cell carcinoma
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Endothelial cell
Iga plasma cell
Epithelial cell of proximal tubule
Igg plasma cell
Epithelial cell of proximal tubule segment 1
Macrophage
Kidney loop of henle thick ascending limb epithelial cell
Mhc-ii-positive classical monocyte
Naive thymus-derived cd4-positive, alpha-beta t cell
Collagen secreting cell
Conventional dendritic cell
Fibroblast
Tissue
Kidney
Developmental stage
Seventh decade stage
Disease
Nonpapillary renal cell carcinoma
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Single cell RNA sequencing and spatial transcriptomics data
Single cell RNA sequencing data (EGAD00001008030)
Spatial transcriptomic data (EGAD00001008781)
Code and pipeline for deSCeRNAmut
Online web portal
Analysis scripts
data.humancellatlas.org
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