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Cell
934
Nucleus
679
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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
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Most cells
Fewest cells
2515
datasets
CELLxGENE
4,992 cells
•
Kumar et al., 2023
A spatially resolved single-cell genomic atlas of the adult human breast
Explore
h5ad
Homo sapiens
Homo sapiens
Adipocyte of breast
+7
Adipocyte of breast
Breast
Breast
Prime adult stage
Prime adult stage
Normal
Normal
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Adipocyte of breast
Endothelial cell of lymphatic vessel
Mammary gland epithelial cell
Luminal epithelial cell of mammary gland
Endothelial cell of vascular tree
B cell
Pericyte
Fibroblast
Tissue
Breast
Developmental stage
Prime adult stage
Disease
Normal
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
github.com
breastatlas.org
GSE195665
explore.data.humancellatlas.org
CELLxGENE
4,992 cells
•
Arutyunyan et al., 2023
Spatial multiomics map of trophoblast development in early pregnancy
Explore
h5ad
Homo sapiens
Homo sapiens
Stromal cell
+12
Stromal cell
Decidua basalis
Decidua basalis
Carnegie stage 18
Carnegie stage 18
Normal
Normal
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Stromal cell
Endothelial cell of lymphatic vessel
Trophoblast giant cell
Extravillous trophoblast
Uterine smooth muscle cell
Epithelial cell
Decidual natural killer cell, human
Endothelial cell of uterus
Placental villous trophoblast
Macrophage
Embryonic fibroblast
B cell
Syncytiotrophoblast cell
Tissue
Decidua basalis
Developmental stage
Carnegie stage 18
Disease
Normal
Sex
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Online web portal
scRNA-seq and snRNA-seq of primary tissue (E-MTAB-12421)
multiome snRNA-seq and snATAC-seq (E-MTAB-12595)
scRNA-seq and snRNA-seq of historical placental beds(EGAD00001010037)
multiome snRNA-seq and snATAC-seq of historical placental beds(EGAD00001010038)
scRNA-seq and snRNA-seq of TSCs(EGAD00001010017)
Image datasets
scRNA-seq and snucRNA-seq of human primary trophoblast organoids (PTO) and trophoblast stem cells (TSCs) differentiation into extravillous trophoblast organoids (EVTs) (E-MTAB-12650)
Spatial transcriptomics of human implantation sites, placenta and decidua (E-MTAB-12698)
CELLxGENE
4,992 cells
•
Arutyunyan et al., 2023
Spatial multiomics map of trophoblast development in early pregnancy
Explore
h5ad
Homo sapiens
Homo sapiens
Stromal cell
+6
Stromal cell
Decidua basalis
Decidua basalis
9th week post-fertilization stage
9th week post-fertilization stage
Normal
Normal
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Stromal cell
Endothelial cell of lymphatic vessel
Trophoblast giant cell
Extravillous trophoblast
Uterine smooth muscle cell
Epithelial cell
Endothelial cell of uterus
Tissue
Decidua basalis
Developmental stage
9th week post-fertilization stage
Disease
Normal
Sex
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Online web portal
scRNA-seq and snRNA-seq of primary tissue (E-MTAB-12421)
multiome snRNA-seq and snATAC-seq (E-MTAB-12595)
scRNA-seq and snRNA-seq of historical placental beds(EGAD00001010037)
multiome snRNA-seq and snATAC-seq of historical placental beds(EGAD00001010038)
scRNA-seq and snRNA-seq of TSCs(EGAD00001010017)
Image datasets
scRNA-seq and snucRNA-seq of human primary trophoblast organoids (PTO) and trophoblast stem cells (TSCs) differentiation into extravillous trophoblast organoids (EVTs) (E-MTAB-12650)
Spatial transcriptomics of human implantation sites, placenta and decidua (E-MTAB-12698)
CELLxGENE
4,992 cells
•
Arutyunyan et al., 2023
Spatial multiomics map of trophoblast development in early pregnancy
Explore
h5ad
Homo sapiens
Homo sapiens
Stromal cell
+9
Stromal cell
Decidua basalis
Decidua basalis
Carnegie stage 23
Carnegie stage 23
Normal
Normal
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Stromal cell
Extravillous trophoblast
Uterine smooth muscle cell
Epithelial cell
Decidual natural killer cell, human
Endothelial cell of uterus
Placental villous trophoblast
Endothelial cell of placenta
Hofbauer cell
Syncytiotrophoblast cell
Tissue
Decidua basalis
Developmental stage
Carnegie stage 23
Disease
Normal
Sex
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Online web portal
scRNA-seq and snRNA-seq of primary tissue (E-MTAB-12421)
multiome snRNA-seq and snATAC-seq (E-MTAB-12595)
scRNA-seq and snRNA-seq of historical placental beds(EGAD00001010037)
multiome snRNA-seq and snATAC-seq of historical placental beds(EGAD00001010038)
scRNA-seq and snRNA-seq of TSCs(EGAD00001010017)
Image datasets
scRNA-seq and snucRNA-seq of human primary trophoblast organoids (PTO) and trophoblast stem cells (TSCs) differentiation into extravillous trophoblast organoids (EVTs) (E-MTAB-12650)
Spatial transcriptomics of human implantation sites, placenta and decidua (E-MTAB-12698)
CELLxGENE
4,992 cells
•
Arutyunyan et al., 2023
Spatial multiomics map of trophoblast development in early pregnancy
Explore
h5ad
Homo sapiens
Homo sapiens
Stromal cell
+11
Stromal cell
Decidua basalis
Decidua basalis
9th week post-fertilization stage
9th week post-fertilization stage
Normal
Normal
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Stromal cell
Endothelial cell of lymphatic vessel
Trophoblast giant cell
Extravillous trophoblast
Uterine smooth muscle cell
Epithelial cell
Decidual natural killer cell, human
Endothelial cell of uterus
Placental villous trophoblast
Endothelial cell of placenta
Embryonic fibroblast
Syncytiotrophoblast cell
Tissue
Decidua basalis
Developmental stage
9th week post-fertilization stage
Disease
Normal
Sex
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Online web portal
scRNA-seq and snRNA-seq of primary tissue (E-MTAB-12421)
multiome snRNA-seq and snATAC-seq (E-MTAB-12595)
scRNA-seq and snRNA-seq of historical placental beds(EGAD00001010037)
multiome snRNA-seq and snATAC-seq of historical placental beds(EGAD00001010038)
scRNA-seq and snRNA-seq of TSCs(EGAD00001010017)
Image datasets
scRNA-seq and snucRNA-seq of human primary trophoblast organoids (PTO) and trophoblast stem cells (TSCs) differentiation into extravillous trophoblast organoids (EVTs) (E-MTAB-12650)
Spatial transcriptomics of human implantation sites, placenta and decidua (E-MTAB-12698)
CELLxGENE
4,992 cells
•
Arutyunyan et al., 2023
Spatial multiomics map of trophoblast development in early pregnancy
Explore
h5ad
Homo sapiens
Homo sapiens
Stromal cell
+11
Stromal cell
Decidua basalis
Decidua basalis
9th week post-fertilization stage
9th week post-fertilization stage
Normal
Normal
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Stromal cell
Endothelial cell of lymphatic vessel
Trophoblast giant cell
Extravillous trophoblast
Uterine smooth muscle cell
Epithelial cell
Decidual natural killer cell, human
Placental villous trophoblast
Endothelial cell of placenta
Embryonic fibroblast
Hofbauer cell
Syncytiotrophoblast cell
Tissue
Decidua basalis
Developmental stage
9th week post-fertilization stage
Disease
Normal
Sex
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Online web portal
scRNA-seq and snRNA-seq of primary tissue (E-MTAB-12421)
multiome snRNA-seq and snATAC-seq (E-MTAB-12595)
scRNA-seq and snRNA-seq of historical placental beds(EGAD00001010037)
multiome snRNA-seq and snATAC-seq of historical placental beds(EGAD00001010038)
scRNA-seq and snRNA-seq of TSCs(EGAD00001010017)
Image datasets
scRNA-seq and snucRNA-seq of human primary trophoblast organoids (PTO) and trophoblast stem cells (TSCs) differentiation into extravillous trophoblast organoids (EVTs) (E-MTAB-12650)
Spatial transcriptomics of human implantation sites, placenta and decidua (E-MTAB-12698)
CELLxGENE
4,992 cells
•
Arutyunyan et al., 2023
Spatial multiomics map of trophoblast development in early pregnancy
Explore
h5ad
Homo sapiens
Homo sapiens
Stromal cell
+6
Stromal cell
Decidua basalis
Decidua basalis
9th week post-fertilization stage
9th week post-fertilization stage
Normal
Normal
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Stromal cell
Extravillous trophoblast
Uterine smooth muscle cell
Epithelial cell
Placental villous trophoblast
Embryonic fibroblast
Syncytiotrophoblast cell
Tissue
Decidua basalis
Developmental stage
9th week post-fertilization stage
Disease
Normal
Sex
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Online web portal
scRNA-seq and snRNA-seq of primary tissue (E-MTAB-12421)
multiome snRNA-seq and snATAC-seq (E-MTAB-12595)
scRNA-seq and snRNA-seq of historical placental beds(EGAD00001010037)
multiome snRNA-seq and snATAC-seq of historical placental beds(EGAD00001010038)
scRNA-seq and snRNA-seq of TSCs(EGAD00001010017)
Image datasets
scRNA-seq and snucRNA-seq of human primary trophoblast organoids (PTO) and trophoblast stem cells (TSCs) differentiation into extravillous trophoblast organoids (EVTs) (E-MTAB-12650)
Spatial transcriptomics of human implantation sites, placenta and decidua (E-MTAB-12698)
CELLxGENE
4,992 cells
•
Arutyunyan et al., 2023
Spatial multiomics map of trophoblast development in early pregnancy
Explore
h5ad
Homo sapiens
Homo sapiens
Stromal cell
+6
Stromal cell
Decidua basalis
Decidua basalis
Carnegie stage 23
Carnegie stage 23
Normal
Normal
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Stromal cell
Extravillous trophoblast
Uterine smooth muscle cell
Epithelial cell
Decidual natural killer cell, human
Endothelial cell of uterus
Syncytiotrophoblast cell
Tissue
Decidua basalis
Developmental stage
Carnegie stage 23
Disease
Normal
Sex
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Online web portal
scRNA-seq and snRNA-seq of primary tissue (E-MTAB-12421)
multiome snRNA-seq and snATAC-seq (E-MTAB-12595)
scRNA-seq and snRNA-seq of historical placental beds(EGAD00001010037)
multiome snRNA-seq and snATAC-seq of historical placental beds(EGAD00001010038)
scRNA-seq and snRNA-seq of TSCs(EGAD00001010017)
Image datasets
scRNA-seq and snucRNA-seq of human primary trophoblast organoids (PTO) and trophoblast stem cells (TSCs) differentiation into extravillous trophoblast organoids (EVTs) (E-MTAB-12650)
Spatial transcriptomics of human implantation sites, placenta and decidua (E-MTAB-12698)
CELLxGENE
4,992 cells
•
Gu et al., 2024
Immune microniches shape intestinal Treg function
Explore
h5ad
Mus musculus
Mus musculus
Germinal center b cell
+8
Germinal center b cell
Colon
Colon
Prime adult stage
Prime adult stage
Normal
Normal
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Mus musculus
Cell type
Germinal center b cell
Endothelial cell
Enteric neuron
Stem cell
Goblet cell
Enterocyte
Transit amplifying cell
Myofibroblast cell
Fibroblast
Tissue
Colon
Developmental stage
Prime adult stage
Disease
Normal
Sex
Technology
Visium spatial gene expression v1
Suspension type
Related Links
treg-gut-niches.cellgeni.sanger.ac.uk
scRNA-seq, scTCR-seq and Visium data
CELLxGENE
4,992 cells
•
Gu et al., 2024
Immune microniches shape intestinal Treg function
Explore
h5ad
Mus musculus
Mus musculus
Neutrophil
+11
Neutrophil
Colon
Colon
Prime adult stage
Prime adult stage
Normal
Normal
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Mus musculus
Cell type
Neutrophil
Germinal center b cell
Enteric neuron
Stem cell
Epithelial cell
Macrophage
Memory b cell
Glial cell
Enterocyte
Transit amplifying cell
Myofibroblast cell
Fibroblast
Tissue
Colon
Developmental stage
Prime adult stage
Disease
Normal
Sex
Technology
Visium spatial gene expression v1
Suspension type
Related Links
treg-gut-niches.cellgeni.sanger.ac.uk
scRNA-seq, scTCR-seq and Visium data
CELLxGENE
4,992 cells
•
Gu et al., 2024
Immune microniches shape intestinal Treg function
Explore
h5ad
Mus musculus
Mus musculus
Neutrophil
+8
Neutrophil
Colon
Colon
Prime adult stage
Prime adult stage
Normal
Normal
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Mus musculus
Cell type
Neutrophil
Germinal center b cell
Enteric neuron
Stem cell
Epithelial cell
Enterocyte
Transit amplifying cell
Myofibroblast cell
Fibroblast
Tissue
Colon
Developmental stage
Prime adult stage
Disease
Normal
Sex
Technology
Visium spatial gene expression v1
Suspension type
Related Links
treg-gut-niches.cellgeni.sanger.ac.uk
scRNA-seq, scTCR-seq and Visium data
CELLxGENE
4,992 cells
•
Gu et al., 2024
Immune microniches shape intestinal Treg function
Explore
h5ad
Mus musculus
Mus musculus
Neutrophil
+11
Neutrophil
Colon
Colon
Prime adult stage
Prime adult stage
Normal
Normal
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Mus musculus
Cell type
Neutrophil
Germinal center b cell
Enteric neuron
Stem cell
Epithelial cell
Group 3 innate lymphoid cell
Goblet cell
Memory b cell
Enterocyte
Transit amplifying cell
Myofibroblast cell
Fibroblast
Tissue
Colon
Developmental stage
Prime adult stage
Disease
Normal
Sex
Technology
Visium spatial gene expression v1
Suspension type
Related Links
treg-gut-niches.cellgeni.sanger.ac.uk
scRNA-seq, scTCR-seq and Visium data
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