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Cell
893
Nucleus
659
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Asap
43
Bgee
40
Cellxgene
2,077
Single cell portal
179
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Most cells
Fewest cells
2339
datasets
CELLxGENE
3,951 cells
•
Nowicki-Osuch et al., 2023
Single-Cell RNA Sequencing Unifies Developmental Programs of Esophageal and Gastric Intestinal Metaplasia
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell of artery
+2
Endothelial cell of artery
Esophagogastric junction
+7
Esophagogastric junction
62-year-old stage
+23
62-year-old stage
Gastritis
+3
Gastritis
Female
+1
Female
10x 3' v2
+1
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Endothelial cell of artery
Capillary endothelial cell
Vein endothelial cell
Tissue
Esophagogastric junction
Colon
Submucosal esophageal gland
Duodenum
Cardia of stomach
Body of stomach
Rectum
Lower esophagus
Developmental stage
62-year-old stage
43-year-old stage
54-year-old stage
34-year-old stage
56-year-old stage
68-year-old stage
55-year-old stage
57-year-old stage
83-year-old stage
77-year-old stage
74-year-old stage
63-year-old stage
48-year-old stage
27-year-old stage
67-year-old stage
80 year-old and over stage
58-year-old stage
50-year-old stage
45-year-old stage
53-year-old stage
29-year-old stage
69-year-old stage
51-year-old stage
41-year-old stage
Disease
Gastritis
Gastric intestinal metaplasia
Barrett esophagus
Normal
Sex
Female
Male
Technology
10x 3' v2
10x 3' v3
Suspension type
Cell
Related Links
EGA dataset:EGAD00001010074
Github:karolno/BE-GIM_Comparison
CELLxGENE
3,941 cells
•
Choksi et al., 2024
An alternative cell cycle coordinates multiciliated cell differentiation
Explore
h5ad
Mus musculus
Mus musculus
Tracheal epithelial cell
Tracheal epithelial cell
Tracheal epithelial cell
Tracheal epithelial cell
Mature stage
Mature stage
Normal
Normal
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Mus musculus
Cell type
Tracheal epithelial cell
Tissue
Tracheal epithelial cell
Developmental stage
Mature stage
Disease
Normal
Sex
Technology
10x 3' v3
Suspension type
Cell
Related Links
Github:lb15/multiciliation_cycle
Zenodo record:10896100
Zenodo record:10896066
Zenodo record:10896071
GEO series:GSE228110
CELLxGENE
3,934 cells
•
Johansen et al., 2023
Interindividual variation in human cortical cell type abundance and expression
Explore
h5ad
Homo sapiens
Homo sapiens
Microglial cell
Microglial cell
Neocortex
Neocortex
Adult stage
Adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Microglial cell
Tissue
Neocortex
Developmental stage
Adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
knowledge.brain-map.org
Allen Brain Map Atlases:rnaseq/human-mtg-10x_sea-ad
NeMo archive:dat-p3eei0g
Github:AllenInstitute/human_variation
Allen Brain Map:classes/multimodal-characterization
CELLxGENE
3,933 cells
•
Sampath Kumar et al., 2023
Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis
Explore
h5ad
Mus musculus
Mus musculus
Notochordal cell
+15
Notochordal cell
Embryo
Embryo
Theiler stage 14
Theiler stage 14
Normal
Normal
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Notochordal cell
Spinal cord interneuron
Paraxial cell
Neurectodermal cell
Gut endothelial cell
Splanchnic mesodermal cell
Hemangioblast
Cardiac valve cell
Endodermal cell
Primitive red blood cell
Midbrain dopaminergic neuron
Anterior visceral endoderm cell
Premigratory neural crest cell
Mesodermal cell
Neuroplacodal cell
Surface ectodermal cell
Tissue
Embryo
Developmental stage
Theiler stage 14
Disease
Normal
Sex
Technology
Slide-seqv2
Suspension type
Related Links
figshare.com
FigShare Dataset:E8_5_Embryo2_h5ad/21695849/1
FigShare Dataset:E9_0_Embryo_h5ad/21695879/1
Chen Lab
GEO series:GSE197353
CELLxGENE
3,933 cells
•
Sampath Kumar et al., 2023
Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis
Explore
h5ad
Mus musculus
Mus musculus
Notochordal cell
+15
Notochordal cell
Embryo
Embryo
Theiler stage 14
Theiler stage 14
Normal
Normal
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Notochordal cell
Spinal cord interneuron
Paraxial cell
Neurectodermal cell
Gut endothelial cell
Splanchnic mesodermal cell
Hemangioblast
Cardiac valve cell
Endodermal cell
Primitive red blood cell
Midbrain dopaminergic neuron
Anterior visceral endoderm cell
Premigratory neural crest cell
Mesodermal cell
Neuroplacodal cell
Surface ectodermal cell
Tissue
Embryo
Developmental stage
Theiler stage 14
Disease
Normal
Sex
Technology
Slide-seqv2
Suspension type
Related Links
Chen Lab
figshare.com
FigShare Dataset:E8_5_Embryo2_h5ad/21695849/1
FigShare Dataset:E9_0_Embryo_h5ad/21695879/1
GEO series:GSE197353
CELLxGENE
3,923 cells
•
Chan et al., 2021
Signatures of plasticity, metastasis, and immunosuppression in an atlas of human small cell lung cancer
Explore
h5ad
Homo sapiens
Homo sapiens
Epithelial cell
Epithelial cell
Pleural effusion
Pleural effusion
75-year-old stage
75-year-old stage
Small cell lung carcinoma
Small cell lung carcinoma
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Epithelial cell
Tissue
Pleural effusion
Developmental stage
75-year-old stage
Disease
Small cell lung carcinoma
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
data.humantumoratlas.org
dbGaP Study:phs002371
CELLxGENE
3,912 cells
•
Gu et al., 2024
Immune microniches shape intestinal Treg function
Explore
h5ad
Mus musculus
Mus musculus
Naive b cell
+5
Naive b cell
Lamina propria of small intestine
+3
Lamina propria of small intestine
Prime adult stage
Prime adult stage
Normal
Normal
10x 5' v2
10x 5' v2
Cell
Cell
Organism
Mus musculus
Cell type
Naive b cell
Memory b cell
Germinal center b cell
B cell zone reticular cell
Plasma cell
Igm plasmablast
Tissue
Lamina propria of small intestine
Caecum
Mesenteric lymph node
Small intestine peyer's patch
Developmental stage
Prime adult stage
Disease
Normal
Sex
Technology
10x 5' v2
Suspension type
Cell
Related Links
Sanger Dataset:treg-gut-niches
ENA Project:PRJEB57700
Single Cell Portal
3,908 cells
Explore
Mus musculus
Mus musculus
Astrocyte
+4
Astrocyte
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Astrocyte
Obsolete excitatory neuron
Oligodendrocyte precursor cell
Brain microvascular endothelial cell
Obsolete inhibitory neuron
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD702) (section 281)
CELLxGENE
3,855 cells
•
Almanzar et al., 2020
A single-cell transcriptomic atlas characterizes ageing tissues in the mouse
Explore
h5ad
Mus musculus
Mus musculus
Skeletal muscle satellite cell
+5
Skeletal muscle satellite cell
Limb muscle
Limb muscle
20-month-old stage and over
+2
20-month-old stage and over
Normal
Normal
Female
+1
Female
Smart-seq2
Smart-seq2
Cell
Cell
Organism
Mus musculus
Cell type
Skeletal muscle satellite cell
T cell
B cell
Macrophage
Endothelial cell
Mesenchymal stem cell
Tissue
Limb muscle
Developmental stage
20-month-old stage and over
18-month-old stage
3-month-old stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
Suspension type
Cell
Related Links
FigShare Dataset:Processed_files_to_use_with_scanpy_/8273102/2
CZ BioHub Portal:tabula-muris-senis
Github:czbiohub/tabula-muris-senis
GEO series:GSE132042
protocols.io:smartseq2-for-htp-generation-of-facs-sorted-single-2uwgexe
CELLxGENE
3,851 cells
•
Seeker et al., 2023
Brain matters: unveiling the distinct contributions of region, age, and sex to glia diversity and CNS function
Explore
h5ad
Homo sapiens
Homo sapiens
Microglial cell
+1
Microglial cell
Cervical spinal cord white matter
+2
Cervical spinal cord white matter
34-year-old stage
+12
34-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Microglial cell
Central nervous system macrophage
Tissue
Cervical spinal cord white matter
White matter of cerebellum
Brodmann (1909) area 4
Developmental stage
34-year-old stage
42-year-old stage
74-year-old stage
63-year-old stage
61-year-old stage
39-year-old stage
72-year-old stage
44-year-old stage
45-year-old stage
37-year-old stage
73-year-old stage
40-year-old stage
71-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
seeker-science.shinyapps.io
Github:Anna-Williams/Luise_Seeker_Human_WM_Glia
HumanCellAtlas:73011a86-4755-48ac-9f70-a28903b4ad77
Single Cell Portal
3,840 cells
Explore
Mus musculus
Mus musculus
Oligodendrocyte
+4
Oligodendrocyte
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Oligodendrocyte
Astrocyte
Obsolete excitatory neuron
Brain microvascular endothelial cell
Obsolete inhibitory neuron
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD720) (section 7)
Corresponding registered brain section (MD720) (section 8)
Corresponding registered brain section (MD720) (section 9)
Corresponding registered brain section (MD721) (section 7)
Corresponding registered brain section (MD721) (section 8)
Corresponding registered brain section (MD721) (section 9)
CELLxGENE
3,834 cells
•
Almanzar et al., 2020
A single-cell transcriptomic atlas characterizes ageing tissues in the mouse
Explore
h5ad
Mus musculus
Mus musculus
Natural killer cell
+5
Natural killer cell
Spleen
Spleen
20-month-old stage and over
+2
20-month-old stage and over
Normal
Normal
Female
+1
Female
Smart-seq2
Smart-seq2
Cell
Cell
Organism
Mus musculus
Cell type
Natural killer cell
B cell
Cd4-positive, alpha-beta t cell
Cd8-positive, alpha-beta t cell
Proerythroblast
Granulocyte
Tissue
Spleen
Developmental stage
20-month-old stage and over
18-month-old stage
3-month-old stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
Suspension type
Cell
Related Links
GEO series:GSE132042
CZ BioHub Portal:tabula-muris-senis
protocols.io:smartseq2-for-htp-generation-of-facs-sorted-single-2uwgexe
Github:czbiohub/tabula-muris-senis
FigShare Dataset:Processed_files_to_use_with_scanpy_/8273102/2
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