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934
Nucleus
679
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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
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2515
datasets
CELLxGENE
4,992 cells
•
Kumar et al., 2023
A spatially resolved single-cell genomic atlas of the adult human breast
Explore
h5ad
Homo sapiens
Homo sapiens
Adipocyte of breast
+7
Adipocyte of breast
Breast
Breast
Prime adult stage
Prime adult stage
Normal
Normal
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Adipocyte of breast
Endothelial cell of lymphatic vessel
Mammary gland epithelial cell
Luminal epithelial cell of mammary gland
Endothelial cell of vascular tree
B cell
Pericyte
Fibroblast
Tissue
Breast
Developmental stage
Prime adult stage
Disease
Normal
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
github.com
breastatlas.org
GSE195665
explore.data.humancellatlas.org
CELLxGENE
4,992 cells
•
Kumar et al., 2023
A spatially resolved single-cell genomic atlas of the adult human breast
Explore
h5ad
Homo sapiens
Homo sapiens
Adipocyte of breast
+7
Adipocyte of breast
Breast
Breast
Adult stage
Adult stage
Normal
Normal
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Adipocyte of breast
Endothelial cell of lymphatic vessel
Mammary gland epithelial cell
Luminal epithelial cell of mammary gland
Endothelial cell of vascular tree
B cell
Pericyte
Fibroblast
Tissue
Breast
Developmental stage
Adult stage
Disease
Normal
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
github.com
breastatlas.org
GSE195665
explore.data.humancellatlas.org
CELLxGENE
4,992 cells
•
Valdeolivas et al., 2024
Profiling the heterogeneity of colorectal cancer consensus molecular subtypes using spatial transcriptomics
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial tip cell
+20
Endothelial tip cell
Rectum
Rectum
Sixth decade stage
Sixth decade stage
Colorectal cancer
Colorectal cancer
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Endothelial tip cell
Stromal cell
Endothelial cell of lymphatic vessel
Mast cell
Cd8-positive, alpha-beta t cell
Iga plasma cell
Smooth muscle cell
Enteroglial cell
Igg plasma cell
Goblet cell
Transit amplifying cell of colon
Macrophage
Regulatory t cell
Endothelial stalk cell
Enterocyte
Cd4-positive, alpha-beta t cell
Malignant cell
B cell
Pericyte
Myofibroblast cell
Conventional dendritic cell
Tissue
Rectum
Developmental stage
Sixth decade stage
Disease
Colorectal cancer
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
github.com
zenodo.org
zenodo.org
CELLxGENE
4,992 cells
•
Valdeolivas et al., 2024
Profiling the heterogeneity of colorectal cancer consensus molecular subtypes using spatial transcriptomics
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial tip cell
+13
Endothelial tip cell
Rectum
Rectum
Eighth decade stage
Eighth decade stage
Colorectal cancer
Colorectal cancer
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Endothelial tip cell
Stromal cell
Cd8-positive, alpha-beta t cell
Iga plasma cell
Inflammatory macrophage
Igg plasma cell
Goblet cell
T-helper 17 cell
Transit amplifying cell of colon
Regulatory t cell
Enterocyte
Cd4-positive, alpha-beta t cell
Malignant cell
B cell
Tissue
Rectum
Developmental stage
Eighth decade stage
Disease
Colorectal cancer
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
github.com
zenodo.org
zenodo.org
CELLxGENE
4,992 cells
•
Valdeolivas et al., 2024
Profiling the heterogeneity of colorectal cancer consensus molecular subtypes using spatial transcriptomics
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial tip cell
+8
Endothelial tip cell
Sigmoid colon
Sigmoid colon
Seventh decade stage
Seventh decade stage
Colorectal cancer
Colorectal cancer
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Endothelial tip cell
Endothelial cell
Inflammatory macrophage
Smooth muscle cell
Macrophage
Endothelial stalk cell
Malignant cell
Pericyte
Myofibroblast cell
Tissue
Sigmoid colon
Developmental stage
Seventh decade stage
Disease
Colorectal cancer
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
github.com
zenodo.org
zenodo.org
CELLxGENE
4,992 cells
•
Valdeolivas et al., 2024
Profiling the heterogeneity of colorectal cancer consensus molecular subtypes using spatial transcriptomics
Explore
h5ad
Homo sapiens
Homo sapiens
Stromal cell
+20
Stromal cell
Right colon
Right colon
Eighth decade stage
Eighth decade stage
Colorectal cancer
Colorectal cancer
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Stromal cell
Natural killer cell
Endothelial cell of lymphatic vessel
Mast cell
Cd8-positive, alpha-beta t cell
Inflammatory macrophage
Smooth muscle cell
Enteroglial cell
Igg plasma cell
Goblet cell
Transit amplifying cell of colon
Macrophage
Regulatory t cell
Enterocyte
Cd4-positive, alpha-beta t cell
Malignant cell
T follicular helper cell
B cell
Pericyte
Myofibroblast cell
Conventional dendritic cell
Tissue
Right colon
Developmental stage
Eighth decade stage
Disease
Colorectal cancer
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
github.com
zenodo.org
zenodo.org
CELLxGENE
4,992 cells
•
Valdeolivas et al., 2024
Profiling the heterogeneity of colorectal cancer consensus molecular subtypes using spatial transcriptomics
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial tip cell
+24
Endothelial tip cell
Rectosigmoid junction
Rectosigmoid junction
Eighth decade stage
Eighth decade stage
Colorectal cancer
Colorectal cancer
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Endothelial tip cell
Stromal cell
Natural killer cell
Endothelial cell of lymphatic vessel
Endothelial cell
Mast cell
Cd8-positive, alpha-beta t cell
Iga plasma cell
Inflammatory macrophage
Smooth muscle cell
Enteroglial cell
Igg plasma cell
Goblet cell
Transit amplifying cell of colon
Macrophage
Regulatory t cell
Endothelial stalk cell
Enterocyte
Cd4-positive, alpha-beta t cell
Malignant cell
T follicular helper cell
B cell
Pericyte
Myofibroblast cell
Conventional dendritic cell
Tissue
Rectosigmoid junction
Developmental stage
Eighth decade stage
Disease
Colorectal cancer
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
github.com
zenodo.org
zenodo.org
CELLxGENE
4,992 cells
•
Valdeolivas et al., 2024
Profiling the heterogeneity of colorectal cancer consensus molecular subtypes using spatial transcriptomics
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial tip cell
+22
Endothelial tip cell
Rectum
Rectum
Sixth decade stage
Sixth decade stage
Colorectal cancer
Colorectal cancer
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Endothelial tip cell
Stromal cell
Endothelial cell of lymphatic vessel
Mast cell
Cd8-positive, alpha-beta t cell
Iga plasma cell
Inflammatory macrophage
Smooth muscle cell
Enteroglial cell
Igg plasma cell
Goblet cell
Transit amplifying cell of colon
Macrophage
Regulatory t cell
Endothelial stalk cell
Enterocyte
Cd4-positive, alpha-beta t cell
Malignant cell
T follicular helper cell
B cell
Pericyte
Myofibroblast cell
Conventional dendritic cell
Tissue
Rectum
Developmental stage
Sixth decade stage
Disease
Colorectal cancer
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
github.com
zenodo.org
zenodo.org
CELLxGENE
4,992 cells
•
Valdeolivas et al., 2024
Profiling the heterogeneity of colorectal cancer consensus molecular subtypes using spatial transcriptomics
Explore
h5ad
Homo sapiens
Homo sapiens
Stromal cell
+16
Stromal cell
Right colon
Right colon
Eighth decade stage
Eighth decade stage
Colorectal cancer
Colorectal cancer
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Stromal cell
Endothelial cell
Cd8-positive, alpha-beta t cell
Inflammatory macrophage
Smooth muscle cell
Goblet cell
Transit amplifying cell of colon
Macrophage
Regulatory t cell
Endothelial stalk cell
Enterocyte
Cd4-positive, alpha-beta t cell
Malignant cell
B cell
Pericyte
Myofibroblast cell
Conventional dendritic cell
Tissue
Right colon
Developmental stage
Eighth decade stage
Disease
Colorectal cancer
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
github.com
zenodo.org
zenodo.org
CELLxGENE
4,992 cells
•
Andrews et al., 2024
Single-cell, single-nucleus, and spatial transcriptomics characterization of the immunological landscape in the healthy and PSC human liver
Explore
h5ad
Homo sapiens
Homo sapiens
Periportal region hepatocyte
+4
Periportal region hepatocyte
Caudate lobe of liver
Caudate lobe of liver
Prime adult stage
Prime adult stage
Primary sclerosing cholangitis
Primary sclerosing cholangitis
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Periportal region hepatocyte
Hepatocyte
Centrilobular region hepatocyte
Blood cell
Intrahepatic cholangiocyte
Tissue
Caudate lobe of liver
Developmental stage
Prime adult stage
Disease
Primary sclerosing cholangitis
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
MacParland et al. (2018) Nature
GSE240429
GSE115469
GSE243977
GSE247128
GSE245620
CELLxGENE
4,992 cells
•
Andrews et al., 2024
Single-cell, single-nucleus, and spatial transcriptomics characterization of the immunological landscape in the healthy and PSC human liver
Explore
h5ad
Homo sapiens
Homo sapiens
Periportal region hepatocyte
+4
Periportal region hepatocyte
Caudate lobe of liver
Caudate lobe of liver
Prime adult stage
Prime adult stage
Primary sclerosing cholangitis
Primary sclerosing cholangitis
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Periportal region hepatocyte
Hepatocyte
Centrilobular region hepatocyte
Blood cell
Intrahepatic cholangiocyte
Tissue
Caudate lobe of liver
Developmental stage
Prime adult stage
Disease
Primary sclerosing cholangitis
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
MacParland et al. (2018) Nature
GSE240429
GSE115469
GSE243977
GSE247128
GSE245620
CELLxGENE
4,992 cells
•
Andrews et al., 2024
Single-cell, single-nucleus, and spatial transcriptomics characterization of the immunological landscape in the healthy and PSC human liver
Explore
h5ad
Homo sapiens
Homo sapiens
Periportal region hepatocyte
+4
Periportal region hepatocyte
Caudate lobe of liver
Caudate lobe of liver
Prime adult stage
Prime adult stage
Normal
Normal
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Periportal region hepatocyte
Hepatocyte
Centrilobular region hepatocyte
Endothelial cell
Blood cell
Tissue
Caudate lobe of liver
Developmental stage
Prime adult stage
Disease
Normal
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
MacParland et al. (2018) Nature
GSE240429
GSE115469
GSE243977
GSE247128
GSE245620
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