Danio rerio

Epidermal mucus secreting cell Peridermal cell Ionocyte Epidermal cell

Skin epidermis Periderm Head Cloaca Multicellular anatomical structure Integument Taste bud Ectoderm-derived structure

Pharyngula:high-pec Segmentation:26+ somites Pharyngula:prim-5 Hatching:pec-fin Hatching:long-pec Segmentation:20-25 somites Segmentation:14-19 somites Larval:protruding-mouth Pharyngula:prim-15 Pharyngula:prim-25

Normal

Sci-rna-seq3

Nucleus

Homo sapiens

Capillary endothelial cell Peptic cell Activated cd8-positive, alpha-beta t cell Igg plasma cell Natural t-regulatory cell Iga plasma cell Macrophage Mast cell Cd4-positive helper t cell Type g enteroendocrine cell Glandular cell of esophagus Stem cell Monocyte Enteroendocrine cell Memory t cell Vein endothelial cell Fibroblast Parietal cell Mucous neck cell of gastric gland Dendritic cell P/d1 enteroendocrine cell Erythrocyte Memory b cell Enterocyte Foveolar cell of stomach Natural killer cell Endothelial cell of artery Gamma-delta t cell Epithelial cell of esophagus Intestine goblet cell

Body of stomach Ileum Rectum Esophagogastric junction Submucosal esophageal gland Duodenum Colon Cardia of stomach Lower esophagus

80-year-old stage 82-year-old stage 66-year-old stage 70-year-old stage 77-year-old stage 50-year-old stage 86-year-old stage 57-year-old stage 62-year-old stage 60-year-old stage 80 year-old and over stage 48-year-old stage 64-year-old stage 45-year-old stage 74-year-old stage 65-year-old stage 67-year-old stage 27-year-old stage 71-year-old stage 36-year-old stage 63-year-old stage 54-year-old stage 56-year-old stage 58-year-old stage 68-year-old stage 34-year-old stage 51-year-old stage 42-year-old stage 53-year-old stage 73-year-old stage 88-year-old stage 84-year-old stage 69-year-old stage 43-year-old stage 29-year-old stage 41-year-old stage 55-year-old stage 83-year-old stage

Normal Barrett esophagus Gastric intestinal metaplasia Gastric cancer Gastritis

Female Male

10x 5' v1 10x 3' v3 10x 3' v2

Cell

Homo sapiens

Cultured cell

Mcf-7

Normal

Sci-plex

Nucleus

Sus scrofa Macaca mulatta Homo sapiens

Granule cell Brain vascular cell Pyramidal neuron Astrocyte Oligodendrocyte precursor cell Oligodendrocyte Leukocyte Macrophage Neuroblast (sensu vertebrata) Dentate gyrus neuron Hippocampal astrocyte Microglial cell Vascular associated smooth muscle cell Pericyte Endothelial cell Hippocampal granule cell T cell Neuron Endothelial cell of artery Myeloid cell Neural cell

Entorhinal cortex Dentate gyrus of hippocampal formation Subiculum Ammon's horn Hippocampal field Ca1 field of hippocampus

79-year-old stage 50-year-old stage 44-year-old stage 48-year-old stage 51-year-old stage

Normal

Female Male

10x genomics v3

Homo sapiens

Neuron

Inferior frontal gyrus Middle temporal gyrus Putamen Brodmann (1909) area 24 Cerebellar vermis Posterior parahippocampal gyrus Anterior olfactory nucleus Brodmann (1909) area 38 Pretectal region Subicular complex Gray matter of midbrain Brodmann (1909) area 14 Brodmann (1909) area 19 Inferior temporal gyrus Hypothalamus Brodmann (1909) area 32 Cerebrocerebellum Dentate gyrus of hippocampal formation Lateral geniculate body Bed nucleus of stria terminalis Median tuberal portion Brodmann (1909) area 13 Primary somatosensory cortex Medial geniculate body Preoptic area Substantia innominata Perirhinal cortex Body of caudate nucleus Extrastriate cortex Lateral nuclear group of thalamus Dorsal tegmental nucleus Brodmann (1909) area 23 Centromedian nucleus of thalamus Epithalamus Substantia nigra Central amygdaloid nucleus Rostral ca3 Granular insular cortex Agranular insular cortex Globus pallidus Basolateral amygdaloid nuclear complex Parabrachial nucleus Ventral anterior nucleus of thalamus Nucleus of dorsal thalamus Anterior cortical amygdaloid nucleus Anterior nuclear group Brodmann (1909) area 43 Primary auditory cortex Medial entorhinal cortex Red nucleus Corticomedial nuclear complex Lateral posterior nucleus of thalamus Brodmann (1909) area 46 Nucleus of medulla oblongata Supraoptic nucleus Uncal ca1 Cerebellar nuclear complex Temporal fusiform gyrus Lateral entorhinal cortex Brodmann (1909) area 25 Midbrain nucleus Primary motor cortex Pulvinar nucleus Pontine tegmentum Primary visual cortex Subthalamic nucleus Spinal cord Superior parietal cortex Hippocampal field Inferior olivary complex Piriform cortex Lateral amygdaloid nucleus Brodmann (1909) area 40 Claustrum of brain Midbrain tectum Mammillary body Pontine reticular formation Pontine nuclear group Medial dorsal nucleus of thalamus Retrosplenial region Nucleus accumbens Medial zone of hypothalamus Intralaminar nuclear group Accessory basal amygdaloid nucleus Superior temporal gyrus Septal nuclear complex Cuneus cortex

50-year-old stage 60-year-old stage 42-year-old stage 29-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Mus musculus

Hepatocyte

Embryo

Theiler stage 23 Theiler stage 24 Theiler stage 21 Theiler stage 13 Theiler stage 25 Theiler stage 17 Theiler stage 16 Theiler stage 26 Theiler stage 18 Theiler stage 20 Theiler stage 19 Theiler stage 27 Theiler stage 14 Theiler stage 15 Theiler stage 22

Normal

Female Male

Sci-rna-seq3

Nucleus

Homo sapiens

Neuroblast (sensu vertebrata)

Upper layers of the cortex Dorsal plus ventral thalamus Head Entorhinal cortex Cerebral subcortex Caudate-putamen Hippocampal formation Hypothalamus Diencephalon Forebrain Cerebellum Telencephalon Choroid plexus epithelium Cerebellar peduncular complex Frontal cortex Brain Striatum Pons Midbrain Lower layers of the cortex Medulla oblongata Hindbrain Cortex Midbrain tectum Basal forebrain Occipital cortex Metencephalon

9th week post-fertilization stage 13th week post-fertilization stage 12th week post-fertilization stage 10th week post-fertilization stage Carnegie stage 22 11th week post-fertilization stage 15th week post-fertilization stage 14th week post-fertilization stage Carnegie stage 15 Carnegie stage 20 Carnegie stage 18 Carnegie stage 16

Normal

10x 3' v3 10x 3' v2

Cell

Homo sapiens

Glutamatergic neuron

Brodmann (1909) area 7 Brodmann (1909) area 17 Brodmann (1909) area 9

80-year-old stage 85-year-old stage 91-year-old stage 82-year-old stage 66-year-old stage 79-year-old stage 70-year-old stage 111-year-old stage 86-year-old stage 57-year-old stage 76-year-old stage 62-year-old stage 93-year-old stage 52-year-old stage 89-year-old stage 67-year-old stage 92-year-old stage 75-year-old stage 71-year-old stage 58-year-old stage 68-year-old stage 61-year-old stage 73-year-old stage 88-year-old stage 97-year-old stage 87-year-old stage 81-year-old stage 83-year-old stage

Normal Alzheimer disease

Female Male

10x 3' v3 Drop-seq 10x 3' v2

Nucleus

Homo sapiens

Schwann cell Skin fibroblast Capillary endothelial cell Naive b cell Igg plasma cell Innate lymphoid cell Endothelial cell of lymphatic vessel Iga plasma cell Macrophage Mast cell Sebaceous gland cell Neutrophil Plasmablast Vein endothelial cell Pericyte Sweat secreting cell Cd8-positive, alpha-beta t cell Dendritic cell Regulatory t cell T cell Smooth muscle cell Hair follicular keratinocyte Keratinocyte Natural killer cell Endothelial cell of artery Gamma-delta t cell Melanocyte

Atopic eczema Normal

10x 3' v3 10x 3' v2

Macaca mulatta

Oligodendrocyte

Cerebellar vermis Entorhinal cortex Brodmann (1909) area 19 Inferior temporal gyrus Hippocampal formation Cerebrocerebellum Lateral geniculate body Primary somatosensory cortex Perirhinal cortex Corpus callosum Anterior cingulate cortex Primary auditory cortex Dorsolateral prefrontal cortex Pons Primary motor cortex Superior temporal sulcus Midbrain Amygdala Primary visual cortex Superior parietal cortex Medulla oblongata Inferior parietal cortex Ventral lateral nucleus of thalamus Medial dorsal nucleus of thalamus Nucleus accumbens Head of caudate nucleus Prefrontal cortex

Prime adult stage Juvenile stage

Normal

Female Male

Sci-rna-seq3

Nucleus

Homo sapiens

Oligodendrocyte

Optic disc Cranial nerve ii

85-year-old stage 82-year-old stage 16-year-old stage 70-year-old stage 18-year-old stage 77-year-old stage 21-year-old stage 32-year-old stage 50-year-old stage 76-year-old stage 62-year-old stage 46-year-old stage 52-year-old stage 60-year-old stage 64-year-old stage 45-year-old stage 74-year-old stage 33-year-old stage 65-year-old stage 67-year-old stage 75-year-old stage 27-year-old stage 37-year-old stage 71-year-old stage 63-year-old stage 54-year-old stage 47-year-old stage 56-year-old stage 58-year-old stage 68-year-old stage 61-year-old stage 15-year-old stage 34-year-old stage 42-year-old stage 53-year-old stage 10-year-old stage 17-year-old stage 72-year-old stage 30-year-old stage 3-year-old stage 69-year-old stage 43-year-old stage 90 year-old and over stage 81-year-old stage 11-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Mus musculus

Glutamatergic neuron Astrocyte Oligodendrocyte Gabaergic neuron Leptomeningeal cell Microglial cell Pericyte Endothelial cell Smooth muscle cell

Primary motor cortex

Prime adult stage

Normal

Male

Merfish