Mus musculus

Pulmonary alveolar type 1 cell Pulmonary alveolar type 2 cell Club cell Lung endothelial cell Endo-epithelial cell Respiratory tract goblet cell

Embryo

Theiler stage 23 Theiler stage 24 Theiler stage 21 Theiler stage 25 Theiler stage 17 Theiler stage 16 Theiler stage 26 Theiler stage 18 Theiler stage 20 Theiler stage 19 Theiler stage 27 Theiler stage 15 Theiler stage 22

Normal

Female Male

Sci-rna-seq3

Nucleus

Homo sapiens

Myofibroblast cell Enteric smooth muscle cell Leukocyte Mesothelial cell Fibroblast Pericyte Gut endothelial cell Intestinal epithelial cell Neural cell

Ileum Hindgut Colon

13th week post-fertilization stage 10th week post-fertilization stage 23rd week post-fertilization stage Carnegie stage 22 11th week post-fertilization stage 21st week post-fertilization stage 19th week post-fertilization stage 20th week post-fertilization stage 17th week post-fertilization stage 14th week post-fertilization stage 16th week post-fertilization stage 18th week post-fertilization stage

Normal

Female Male

10x 3' v3

Cell

Homo sapiens

Activated cd8-positive, alpha-beta t cell Cd4-positive, alpha-beta t cell Lymphocyte Effector memory cd4-positive, alpha-beta t cell Cd4-positive helper t cell Cd8-positive, alpha-beta memory t cell Effector memory cd8-positive, alpha-beta t cell Activated cd4-positive, alpha-beta t cell Regulatory t cell Mature nk t cell T cell Natural killer cell Gamma-delta t cell

Breast

Prime adult stage Adult stage

Normal

Female

10x 3' v3 10x 3' v2

Cell

Homo sapiens

Pulmonary alveolar type 1 cell Classical monocyte Cd4-positive, alpha-beta t cell Pulmonary alveolar type 2 cell Club cell Non-classical monocyte Pancreatic acinar cell Mesothelial cell Mast cell Lung endothelial cell Basal cell Neutrophil Myeloid dendritic cell, human Lung multiciliated epithelial cell Dendritic cell, human B cell Cd8-positive, alpha-beta t cell Lung macrophage Lung pericyte Plasmacytoid dendritic cell, human Plasma cell Pulmonary capillary endothelial cell Regulatory t cell Mature nk t cell Fibroblast of lung Smooth muscle cell Natural killer cell

Upper lobe of left lung

83-year-old stage

Covid-19

Male

10x 3' v3

Cell

Callithrix jacchus

L2/3-6 intratelencephalic projecting glutamatergic neuron Caudal ganglionic eminence derived interneuron Cerebral cortex endothelial cell Vascular leptomeningeal cell Oligodendrocyte precursor cell Oligodendrocyte Astrocyte of the cerebral cortex Sncg gabaergic interneuron Near-projecting glutamatergic cortical neuron Sst gabaergic interneuron Microglial cell Lamp5 gabaergic interneuron L6b glutamatergic cortical neuron Corticothalamic-projecting glutamatergic cortical neuron L5 extratelencephalic projecting glutamatergic cortical neuron Vip gabaergic interneuron Pvalb gabaergic interneuron Pvalb chandelier gabaergic interneuron

Middle temporal gyrus

Prime adult stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Sst gabaergic interneuron

Dorsolateral prefrontal cortex

80-year-old stage 85-year-old stage 82-year-old stage 70-year-old stage 77-year-old stage 50-year-old stage 86-year-old stage 80 year-old and over stage 89-year-old stage 75-year-old stage 78-year-old stage 68-year-old stage 42-year-old stage 72-year-old stage 88-year-old stage 84-year-old stage 69-year-old stage 29-year-old stage 87-year-old stage 81-year-old stage 83-year-old stage

Normal Dementia

Female Male

10x 3' v3 10x multiome

Nucleus

Callithrix jacchus

Oligodendrocyte

Secondary visual cortex Primary somatosensory cortex Brodmann (1909) area 23 Temporal cortex Primary auditory cortex Dorsolateral prefrontal cortex Temporal lobe Parietal cortex Primary motor cortex Primary visual cortex Prefrontal cortex

Prime adult stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Myofibroblast cell Glial cell Lymphocyte Fibroblast Pericyte Endothelial cell

Ileum Ileum lamina propria Small intestine Lamina propria of small intestine Ileal epithelium

Fourth decade stage Eighth decade stage Fifth decade stage Seventh decade stage Third decade stage Sixth decade stage

Normal Crohn disease

Female Male

10x 3' v3 10x 3' v2

Cell

Homo sapiens

Glutamatergic neuron Astrocyte Oligodendrocyte precursor cell Oligodendrocyte Gabaergic neuron Perivascular cell Microglial cell Pericyte Endothelial cell Central nervous system macrophage

Primary motor cortex

80-year-old stage 67-year-old stage 75-year-old stage 68-year-old stage 73-year-old stage 83-year-old stage

Normal Amyotrophic lateral sclerosis

Female Male

10x 3' v3 10x multiome

Nucleus

Homo sapiens

Cholangiocyte Mast cell Neutrophil Conventional dendritic cell Fibroblast Malignant cell Hepatocyte Endothelial cell B cell Plasma cell T cell Plasmacytoid dendritic cell Natural killer cell Mononuclear phagocyte

Liver

70-year-old stage 46-year-old stage 56-year-old stage 53-year-old stage 39-year-old stage

Normal Colorectal carcinoma Metastatic malignant neoplasm

Female Male

Bd rhapsody whole transcriptome analysis

Cell

Homo sapiens

Trophoblast giant cell Extravillous trophoblast Syncytiotrophoblast cell Placental villous trophoblast

Decidua Decidua basalis Placenta

9th week post-fertilization stage Carnegie stage 14 13th week post-fertilization stage 10th week post-fertilization stage Carnegie stage 22 11th week post-fertilization stage Carnegie stage 23 Carnegie stage 18 Carnegie stage 16

Normal

Female

10x 3' v3 10x multiome 10x 3' v2

Cell Nucleus

Homo sapiens

Neuron

Middle temporal gyrus Posterior parahippocampal gyrus Anterior olfactory nucleus Subicular complex Brodmann (1909) area 14 Hypothalamus Dentate gyrus of hippocampal formation Lateral geniculate body Bed nucleus of stria terminalis Medial geniculate body Substantia nigra Rostral ca3 Basolateral amygdaloid nuclear complex Medial entorhinal cortex Corticomedial nuclear complex Brodmann (1909) area 46 Supraoptic nucleus Uncal ca1 Brodmann (1909) area 25 Primary motor cortex Pulvinar nucleus Subthalamic nucleus Hippocampal field Piriform cortex Lateral amygdaloid nucleus Mammillary body Retrosplenial region Accessory basal amygdaloid nucleus Septal nuclear complex

50-year-old stage 60-year-old stage 42-year-old stage 29-year-old stage

Normal

Female Male

10x 3' v3

Nucleus