Homo sapiens

Club cell Bronchial goblet cell Multiciliated epithelial cell of the bronchus Pulmonary ionocyte Pulmonary neuroendocrine cell Brush cell of bronchus Basal cell of epithelium of bronchus

Bronchial epithelial cell

Covid-19 Normal

10x 3' v3

Cell

Homo sapiens

Neutrophil Granulocyte Group 3 innate lymphoid cell, human Ciliated cell Natural killer cell Lung secretory cell Pro-t cell Endothelial cell Pro-b cell Mast cell Cd8-positive, alpha-beta t cell Late pro-b cell Group 2 innate lymphoid cell Erythroid lineage cell Smooth muscle cell Plasmacytoid dendritic cell Precursor b cell Early lymphoid progenitor Megakaryocyte progenitor cell Macrophage Cd16-positive, cd56-dim natural killer cell, human Innate lymphoid cell Regulatory t cell Myelocyte Large pre-b-ii cell Mature b cell Group 1 innate lymphoid cell Cd22-positive, cd38-low small pre-b cell Common myeloid progenitor Cd4-positive, alpha-beta t cell Cd14-positive monocyte Epithelial cell of distal tubule Hematopoietic multipotent progenitor cell Megakaryocyte Alveolar adventitial fibroblast Cd14-low, cd16-positive monocyte Granulocyte monocyte progenitor cell Alveolar type 1 fibroblast cell Immature b cell Megakaryocyte-erythroid progenitor cell Fraction a pre-pro b cell Monocyte Conventional dendritic cell Fibroblast Early pro-b cell Dendritic cell Cd16-negative, cd56-bright natural killer cell, human Lung pericyte

Lung

Carnegie stage 19 21st week post-fertilization stage 13th week post-fertilization stage 15th week post-fertilization stage 20th week post-fertilization stage 9th week post-fertilization stage 10th week post-fertilization stage 18th week post-fertilization stage 22nd week post-fertilization stage Carnegie stage 16 11th week post-fertilization stage

Normal

Female Male

10x 5' v1 10x 3' v2

Cell

Homo sapiens

Blood vessel endothelial cell Endothelial cell of lymphatic vessel Secretory cell Mature nk t cell Mast cell Smooth muscle cell Macrophage Ciliated epithelial cell B cell Pericyte Myofibroblast cell Fibroblast

Ampulla of fallopian tube Fimbria of fallopian tube Fallopian tube Isthmus of fallopian tube

34-year-old stage 52-year-old stage 30-year-old stage 32-year-old stage 46-year-old stage 31-year-old stage

Hydrosalpinx Normal

Female

10x 3' v3

Cell

Homo sapiens

T cell Granulocyte Group 3 innate lymphoid cell, human Dendritic cell, human Stromal cell Natural killer cell Endothelial cell Mast cell Plasmacytoid dendritic cell Plasma cell B cell Cd34-negative, cd117-positive innate lymphoid cell, human Mononuclear phagocyte

Cystic lymph node

75-year-old stage 54-year-old stage 51-year-old stage 64-year-old stage 20-year-old stage 40-year-old stage

Normal

Female Male

10x 3' v3

Cell

Homo sapiens

Medial ganglionic eminence derived gabaergic interneuron L2/3 intratelencephalic projecting glutamatergic neuron L5/6 near-projecting glutamatergic neuron Glutamatergic neuron Oligodendrocyte precursor cell L5 intratelencephalic projecting glutamatergic neuron Oligodendrocyte Amygdala excitatory neuron Committed oligodendrocyte precursor Hippocampal ca1-3 neuron Dentate gyrus neuron Lamp5 gabaergic interneuron Brain vascular cell Microglial cell Caudal ganglionic eminence derived interneuron Astrocyte Fibroblast

Temporal cortex Hippocampal formation Amygdala

9-year-old stage 14-year-old stage 11-year-old stage 6-year-old stage 10-year-old stage

Normal

Female Male

10x multiome

Nucleus

Homo sapiens

Follicular dendritic cell Fibroblast of gingiva Fibroblastic reticular cell Gastrointestinal tract (lamina propria) macrophage Mesothelial cell Pericyte Vascular associated smooth muscle cell Myofibroblast cell Fibroblast

Ascending colon Colonic mucosa Stomach Duodenum Colonic epithelium Ileal epithelium Rectosigmoid junction Pyloric antrum Caecum Small intestine Gingiva Ileum Ileum lamina propria Colon Epithelium of rectum Epithelium of esophagus Buccal mucosa Body of stomach Vermiform appendix Pylorus Rectum Esophagus Jejunum Transverse colon Periodontium Parotid gland Descending colon Sigmoid colon Labial gland Epithelium of stomach Mesenteric lymph node

66-year-old stage 69-year-old stage 37-year-old stage 75-year-old stage Pediatric stage 21-year-old stage 13-year-old stage 34-year-old stage 65-year-old stage 26-year-old stage 43-year-old stage Sixth decade stage 87-year-old stage 85-year-old stage 61-year-old stage 2-year-old stage 52-year-old stage 54-year-old stage 68-year-old stage 48-year-old stage 30-year-old stage 39-year-old stage 44-year-old stage 29-year-old stage 56-year-old stage Fifth decade stage 55-year-old stage 84-year-old stage 50-year-old stage 80-year-old stage 28-year-old stage 51-year-old stage 57-year-old stage 12-year-old stage 72-year-old stage Third decade stage 81-year-old stage 9-year-old stage 14-year-old stage 24-year-old stage 23-year-old stage 35-year-old stage Seventh decade stage 58-year-old stage 59-year-old stage Adult stage 67-year-old stage 32-year-old stage 77-year-old stage 33-year-old stage 45-year-old stage 62-year-old stage 86-year-old stage 41-year-old stage 70-year-old stage 46-year-old stage 60-year-old stage 31-year-old stage Fourth decade stage 22-year-old stage 63-year-old stage Eighth decade stage 76-year-old stage Prime adult stage 11-year-old stage 6-year-old stage Young adult stage 10-year-old stage 4-year-old stage Juvenile stage (5-14 yo)

Gastric cancer Inflammatory bowel disease Colorectal cancer Ulcerative colitis Normal Crohn disease

Female Male

10x 3' v1 10x 5' v2 10x 5' transcription profiling 10x 5' v1 10x 3' v3 10x 3' v2

Cell

Homo sapiens

T cell Natural killer cell Gamma-delta t cell Alpha-beta t cell Cd8-positive, alpha-beta t cell Double-positive, alpha-beta thymocyte Thymocyte T-helper 17 cell Regulatory t cell Cd4-positive, alpha-beta t cell Double negative thymocyte

Thymus

13th week post-fertilization stage 2-year-old stage 3-month-old stage 15th week post-fertilization stage 17th week post-fertilization stage 15-month-old stage 12th week post-fertilization stage 16th week post-fertilization stage 9th week post-fertilization stage 6-month-old stage 10th week post-fertilization stage Organogenesis stage 10-month-old stage 11th week post-fertilization stage Juvenile stage (5-14 yo)

Normal

Female Male

10x 5' v1 10x 3' v3 10x 3' v2

Cell

Homo sapiens

T cell Effector cd8-positive, alpha-beta t cell Natural killer cell Gamma-delta t cell Activated cd4-positive, alpha-beta t cell Mature nk t cell Cd8-positive, alpha-beta t cell Cd8-positive, alpha-beta memory t cell Group 3 innate lymphoid cell T-helper 17 cell Cd4-positive, cd25-positive, alpha-beta regulatory t cell Cd4-positive, alpha-beta t cell T follicular helper cell

Colorectum

69-year-old stage 91-year-old stage 42-year-old stage 89-year-old stage 71-year-old stage 53-year-old stage 61-year-old stage 52-year-old stage 48-year-old stage 56-year-old stage 55-year-old stage 84-year-old stage 82-year-old stage 50-year-old stage 90-year-old stage 51-year-old stage 57-year-old stage 72-year-old stage 81-year-old stage 49-year-old stage 35-year-old stage 58-year-old stage 59-year-old stage 67-year-old stage 77-year-old stage 64-year-old stage 45-year-old stage 62-year-old stage 70-year-old stage 60-year-old stage 78-year-old stage 36-year-old stage 47-year-old stage 76-year-old stage 73-year-old stage

Normal Colon adenocarcinoma

Female Male

10x 3' v3 10x 3' v2

Cell

Mus musculus

Club cell Respiratory tract goblet cell Endo-epithelial cell Pulmonary alveolar type 1 cell Lung endothelial cell Pulmonary alveolar type 2 cell

Embryo

Theiler stage 22 Theiler stage 27 Theiler stage 24 Theiler stage 18 Theiler stage 25 Theiler stage 16 Theiler stage 17 Theiler stage 15 Theiler stage 19 Theiler stage 26 Theiler stage 20 Theiler stage 21 Theiler stage 23

Normal

Female Male

Sci-rna-seq3

Nucleus

Homo sapiens

Leukocyte Neural cell Gut endothelial cell Enteric smooth muscle cell Intestinal epithelial cell Mesothelial cell Pericyte Myofibroblast cell Fibroblast

Hindgut Ileum Colon

19th week post-fertilization stage 21st week post-fertilization stage 23rd week post-fertilization stage 13th week post-fertilization stage 14th week post-fertilization stage 20th week post-fertilization stage 17th week post-fertilization stage 16th week post-fertilization stage 10th week post-fertilization stage 18th week post-fertilization stage Carnegie stage 22 11th week post-fertilization stage

Normal

Female Male

10x 3' v3

Cell

Homo sapiens

T cell Natural killer cell Gamma-delta t cell Activated cd4-positive, alpha-beta t cell Mature nk t cell Cd4-positive helper t cell Effector memory cd4-positive, alpha-beta t cell Lymphocyte Cd8-positive, alpha-beta memory t cell Regulatory t cell Activated cd8-positive, alpha-beta t cell Cd4-positive, alpha-beta t cell Effector memory cd8-positive, alpha-beta t cell

Breast

Adult stage Prime adult stage

Normal

Female

10x 3' v3 10x 3' v2

Cell

Homo sapiens

Neutrophil Club cell Dendritic cell, human Natural killer cell Pulmonary capillary endothelial cell Myeloid dendritic cell, human Mature nk t cell Mast cell Cd8-positive, alpha-beta t cell Pancreatic acinar cell Basal cell Classical monocyte Smooth muscle cell Plasmacytoid dendritic cell, human Lung multiciliated epithelial cell Lung macrophage Regulatory t cell Pulmonary alveolar type 1 cell Lung endothelial cell Fibroblast of lung Plasma cell Cd4-positive, alpha-beta t cell Mesothelial cell B cell Pulmonary alveolar type 2 cell Lung pericyte Non-classical monocyte

Upper lobe of left lung

83-year-old stage

Covid-19

Male

10x 3' v3

Cell