Danio rerio

Neural crest cell Mesodermal cell Tendon cell Pericyte Mesenchymal cell Migratory cranial neural crest cell Connective tissue cell Hypertrophic chondrocyte Chondroblast Smooth muscle cell Chondrocyte

Head Anterior segment of eyeball Leptomeninx Periocular mesenchyme Meninx Pharyngeal arch Multicellular anatomical structure Neural crest Bulbus arteriosus Trunk neural crest Head connective tissue

Pharyngula:high-pec Segmentation:26+ somites Pharyngula:prim-5 Hatching:pec-fin Hatching:long-pec Segmentation:20-25 somites Segmentation:14-19 somites Larval:protruding-mouth Pharyngula:prim-15 Pharyngula:prim-25

Normal

Sci-rna-seq3

Nucleus

Homo sapiens

Neuron

Inferior frontal gyrus Middle temporal gyrus Putamen Brodmann (1909) area 24 Posterior parahippocampal gyrus Anterior olfactory nucleus Brodmann (1909) area 38 Pretectal region Subicular complex Gray matter of midbrain Brodmann (1909) area 14 Brodmann (1909) area 19 Inferior temporal gyrus Brodmann (1909) area 32 Dentate gyrus of hippocampal formation Lateral geniculate body Bed nucleus of stria terminalis Brodmann (1909) area 13 Primary somatosensory cortex Preoptic area Substantia innominata Perirhinal cortex Extrastriate cortex Brodmann (1909) area 23 Epithalamus Substantia nigra Central amygdaloid nucleus Granular insular cortex Agranular insular cortex Globus pallidus Basolateral amygdaloid nuclear complex Ventral anterior nucleus of thalamus Anterior cortical amygdaloid nucleus Brodmann (1909) area 43 Primary auditory cortex Medial entorhinal cortex Red nucleus Corticomedial nuclear complex Lateral posterior nucleus of thalamus Brodmann (1909) area 46 Supraoptic nucleus Uncal ca1 Temporal fusiform gyrus Lateral entorhinal cortex Brodmann (1909) area 25 Primary motor cortex Primary visual cortex Subthalamic nucleus Superior parietal cortex Hippocampal field Piriform cortex Lateral amygdaloid nucleus Brodmann (1909) area 40 Claustrum of brain Midbrain tectum Mammillary body Retrosplenial region Nucleus accumbens Medial zone of hypothalamus Intralaminar nuclear group Accessory basal amygdaloid nucleus Superior temporal gyrus Septal nuclear complex Cuneus cortex

50-year-old stage 60-year-old stage 42-year-old stage 29-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Mus musculus

Retinal ganglion cell

Normal

10x 3' v3 10x 3' v2

Mus musculus

Retinal ganglion cell

Retina

12-week-old stage 4-month-old stage 7-week-old stage 5-week-old stage Postnatal stage 25-week-old stage 2-week-old stage 9-week-old stage 8-week-old stage 11-week-old stage

Normal

Male

10x 3' v3 10x 3' v2

Cell

Homo sapiens

Club cell Pulmonary neuroendocrine cell Multiciliated epithelial cell of the bronchus Brush cell of bronchus Bronchial goblet cell Pulmonary ionocyte Basal cell of epithelium of bronchus

Bronchial epithelial cell

Normal Covid-19

10x 3' v3

Cell

Homo sapiens

Pro-b cell Cd22-positive, cd38-low small pre-b cell Common myeloid progenitor Group 1 innate lymphoid cell Innate lymphoid cell Megakaryocyte progenitor cell Cd4-positive, alpha-beta t cell Large pre-b-ii cell Macrophage Mature b cell Granulocyte monocyte progenitor cell Late pro-b cell Alveolar type 1 fibroblast cell Mast cell Megakaryocyte-erythroid progenitor cell Cd16-negative, cd56-bright natural killer cell, human Erythroid lineage cell Fraction a pre-pro b cell Neutrophil Monocyte Megakaryocyte Cd14-positive monocyte Immature b cell Granulocyte Group 3 innate lymphoid cell, human Early lymphoid progenitor Conventional dendritic cell Fibroblast Endothelial cell Pro-t cell Cd8-positive, alpha-beta t cell Group 2 innate lymphoid cell Lung pericyte Dendritic cell Regulatory t cell Plasmacytoid dendritic cell Myelocyte Cd14-low, cd16-positive monocyte Precursor b cell Alveolar adventitial fibroblast Early pro-b cell Smooth muscle cell Epithelial cell of distal tubule Lung secretory cell Natural killer cell Hematopoietic multipotent progenitor cell Ciliated cell Cd16-positive, cd56-dim natural killer cell, human

Lung

9th week post-fertilization stage 13th week post-fertilization stage 10th week post-fertilization stage 11th week post-fertilization stage 21st week post-fertilization stage 20th week post-fertilization stage 15th week post-fertilization stage 22nd week post-fertilization stage Carnegie stage 19 18th week post-fertilization stage Carnegie stage 16

Normal

Female Male

10x 5' v1 10x 3' v2

Cell

Homo sapiens

Myofibroblast cell Ciliated epithelial cell Endothelial cell of lymphatic vessel Macrophage Mast cell Fibroblast Blood vessel endothelial cell Pericyte B cell Mature nk t cell Secretory cell Smooth muscle cell

Fimbria of fallopian tube Fallopian tube Isthmus of fallopian tube Ampulla of fallopian tube

32-year-old stage 46-year-old stage 52-year-old stage 31-year-old stage 34-year-old stage 30-year-old stage

Normal Hydrosalpinx

Female

10x 3' v3

Cell

Homo sapiens

Stromal cell Mast cell Dendritic cell, human Granulocyte Group 3 innate lymphoid cell, human Endothelial cell B cell Plasma cell T cell Plasmacytoid dendritic cell Natural killer cell Cd34-negative, cd117-positive innate lymphoid cell, human Mononuclear phagocyte

Cystic lymph node

64-year-old stage 40-year-old stage 75-year-old stage 54-year-old stage 20-year-old stage 51-year-old stage

Normal

Female Male

10x 3' v3

Cell

Homo sapiens

L2/3 intratelencephalic projecting glutamatergic neuron Caudal ganglionic eminence derived interneuron Brain vascular cell Glutamatergic neuron Hippocampal ca1-3 neuron Astrocyte Oligodendrocyte precursor cell Oligodendrocyte Medial ganglionic eminence derived gabaergic interneuron Dentate gyrus neuron Committed oligodendrocyte precursor L5/6 near-projecting glutamatergic neuron L5 intratelencephalic projecting glutamatergic neuron Microglial cell Lamp5 gabaergic interneuron Fibroblast Amygdala excitatory neuron

Hippocampal formation Temporal cortex Amygdala

14-year-old stage 6-year-old stage 10-year-old stage 9-year-old stage 11-year-old stage

Normal

Female Male

10x multiome

Nucleus

Homo sapiens

Myofibroblast cell Fibroblastic reticular cell Mesothelial cell Vascular associated smooth muscle cell Fibroblast Pericyte Follicular dendritic cell Fibroblast of gingiva Gastrointestinal tract (lamina propria) macrophage

Epithelium of esophagus Gingiva Body of stomach Ileum Rectum Ileum lamina propria Mesenteric lymph node Parotid gland Epithelium of rectum Caecum Small intestine Esophagus Colonic epithelium Epithelium of stomach Jejunum Transverse colon Labial gland Pyloric antrum Sigmoid colon Periodontium Duodenum Ileal epithelium Pylorus Colon Descending colon Ascending colon Stomach Rectosigmoid junction Buccal mucosa Vermiform appendix Colonic mucosa

80-year-old stage 85-year-old stage 66-year-old stage 70-year-old stage Young adult stage Fourth decade stage 77-year-old stage 21-year-old stage 32-year-old stage 50-year-old stage 86-year-old stage 57-year-old stage 76-year-old stage 62-year-old stage Prime adult stage 46-year-old stage 52-year-old stage 60-year-old stage 22-year-old stage Juvenile stage (5-14 yo) 44-year-old stage 48-year-old stage 45-year-old stage 33-year-old stage 65-year-old stage 67-year-old stage 2-year-old stage Eighth decade stage 75-year-old stage 23-year-old stage 37-year-old stage Adult stage 14-year-old stage 6-year-old stage 28-year-old stage 63-year-old stage 59-year-old stage 54-year-old stage Fifth decade stage 31-year-old stage 56-year-old stage 58-year-old stage Pediatric stage 68-year-old stage 61-year-old stage 34-year-old stage 51-year-old stage 35-year-old stage 10-year-old stage 72-year-old stage 30-year-old stage 24-year-old stage 13-year-old stage Seventh decade stage 26-year-old stage 84-year-old stage 12-year-old stage 39-year-old stage 4-year-old stage 9-year-old stage 69-year-old stage Third decade stage 43-year-old stage 29-year-old stage 87-year-old stage 41-year-old stage 81-year-old stage 55-year-old stage Sixth decade stage 11-year-old stage

Ulcerative colitis Inflammatory bowel disease Normal Crohn disease Colorectal cancer Gastric cancer

Female Male

10x 5' v2 10x 5' v1 10x 3' v3 10x 5' transcription profiling 10x 3' v1 10x 3' v2

Cell

Homo sapiens

Cd4-positive, alpha-beta t cell Double-positive, alpha-beta thymocyte Double negative thymocyte T-helper 17 cell Alpha-beta t cell Thymocyte Cd8-positive, alpha-beta t cell Regulatory t cell T cell Natural killer cell Gamma-delta t cell

Thymus

9th week post-fertilization stage 6-month-old stage 15-month-old stage 3-month-old stage 13th week post-fertilization stage 12th week post-fertilization stage 10th week post-fertilization stage Juvenile stage (5-14 yo) 2-year-old stage 10-month-old stage 11th week post-fertilization stage 17th week post-fertilization stage 15th week post-fertilization stage Organogenesis stage 16th week post-fertilization stage

Normal

Female Male

10x 5' v1 10x 3' v3 10x 3' v2

Cell

Homo sapiens

Cd4-positive, alpha-beta t cell Effector cd8-positive, alpha-beta t cell Cd8-positive, alpha-beta memory t cell Group 3 innate lymphoid cell T-helper 17 cell Cd8-positive, alpha-beta t cell Cd4-positive, cd25-positive, alpha-beta regulatory t cell Activated cd4-positive, alpha-beta t cell Mature nk t cell T cell T follicular helper cell Natural killer cell Gamma-delta t cell

Colorectum

91-year-old stage 82-year-old stage 70-year-old stage 77-year-old stage 50-year-old stage 57-year-old stage 76-year-old stage 62-year-old stage 52-year-old stage 60-year-old stage 48-year-old stage 64-year-old stage 89-year-old stage 45-year-old stage 67-year-old stage 71-year-old stage 78-year-old stage 36-year-old stage 59-year-old stage 47-year-old stage 56-year-old stage 58-year-old stage 61-year-old stage 51-year-old stage 49-year-old stage 42-year-old stage 35-year-old stage 53-year-old stage 72-year-old stage 73-year-old stage 84-year-old stage 90-year-old stage 69-year-old stage 81-year-old stage 55-year-old stage

Normal Colon adenocarcinoma

Female Male

10x 3' v3 10x 3' v2

Cell