Macaca mulatta

Brain vascular cell

Brodmann (1909) area 19 Amygdala Anterior cingulate cortex Cerebellar vermis Cerebrocerebellum Corpus callosum Dorsolateral prefrontal cortex Entorhinal cortex Head of caudate nucleus Hippocampal formation Inferior parietal cortex Inferior temporal gyrus Lateral geniculate body Medial dorsal nucleus of thalamus Medulla oblongata Midbrain Nucleus accumbens Perirhinal cortex Pons Prefrontal cortex Primary auditory cortex Primary motor cortex Primary somatosensory cortex Primary visual cortex Superior parietal cortex Superior temporal sulcus Ventral lateral nucleus of thalamus

Juvenile stage Prime adult stage

Normal

Female Male

Sci-rna-seq3

Nucleus

Homo sapiens

Endothelial cell of hepatic sinusoid T cell Neutrophil Hepatocyte Natural killer cell Erythrocyte Gamma-delta t cell Kupffer cell Platelet Cycling plasma cell Macrophage Mature b cell Cholangiocyte Hematopoietic stem cell Plasma cell Cycling myeloid cell Conventional dendritic cell Mononuclear phagocyte

Caudate lobe of liver Left lobe of liver Liver Right lobe of liver

69-year-old stage 26-year-old stage 57-year-old stage Nursing stage (0-11 months) 15-19 year-old Late adult stage Prime adult stage Child stage (1-4 yo) Young adult stage Juvenile stage (5-14 yo)

Intestinal failure–associated liver disease Normal

Female Male

10x 5' v2 10x 5' v1 10x 3' v3 10x 3' v2

Cell

Homo sapiens

Dopaminergic neuron Neuron

Substantia nigra pars compacta

91-year-old stage 92-year-old stage 82-year-old stage 90-year-old stage 49-year-old stage 79-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Mus musculus

T cell Cell Oligodendrocyte precursor cell Endothelial cell Oligodendrocyte Vascular leptomeningeal cell Inhibitory interneuron Macrophage Microglial cell Pericyte Neuron Astrocyte Medium spiny neuron

Brain

4-week-old stage 20-month-old stage and over

Normal

Female

10x 3' v3

Nucleus

Homo sapiens

L2/3-6 intratelencephalic projecting glutamatergic neuron

Neocortex

Adult stage

Normal

Female Male

10x 3' v3

Cell

Homo sapiens

Intestine goblet cell Type g enteroendocrine cell Stem cell Peptic cell P/d1 enteroendocrine cell Enteroendocrine cell Parietal cell Enterocyte Mucous neck cell of gastric gland Foveolar cell of stomach

Body of stomach Cardia of stomach Colon Duodenum Esophagogastric junction Ileum Lower esophagus Rectum

66-year-old stage 69-year-old stage 34-year-old stage 42-year-old stage 43-year-old stage 53-year-old stage 54-year-old stage 68-year-old stage 48-year-old stage 29-year-old stage 56-year-old stage 55-year-old stage 50-year-old stage 51-year-old stage 57-year-old stage 74-year-old stage 80 year-old and over stage 58-year-old stage 67-year-old stage 77-year-old stage 45-year-old stage 62-year-old stage 41-year-old stage 60-year-old stage 63-year-old stage 83-year-old stage

Barrett esophagus Normal Gastric intestinal metaplasia Gastritis

Female Male

10x 3' v3 10x 3' v2

Cell

Mus musculus

Osteoblast Erythroid progenitor cell, mammalian Peridermal cell Ectodermal cell Schwann cell Melanocyte Neuroplacodal cell Neural crest cell Neural cell Muscle precursor cell Embryonic blood vessel endothelial progenitor cell Myeloid cell Pituitary gland cell Mesenchymal cell Blood cell Chondrocyte

Pharyngeal arch system

Theiler stage 22 Theiler stage 17 Theiler stage 19 Theiler stage 20 Theiler stage 21 Theiler stage 23

Normal

10x multiome 10x 3' v3

Nucleus

Homo sapiens

Gabaergic neuron

Brodmann (1909) area 17 Brodmann (1909) area 7 Brodmann (1909) area 9

66-year-old stage 75-year-old stage 91-year-old stage 89-year-old stage 93-year-old stage 87-year-old stage 71-year-old stage 85-year-old stage 61-year-old stage 88-year-old stage 52-year-old stage 68-year-old stage 92-year-old stage 111-year-old stage 82-year-old stage 80-year-old stage 57-year-old stage 81-year-old stage 97-year-old stage 58-year-old stage 67-year-old stage 62-year-old stage 86-year-old stage 70-year-old stage 76-year-old stage 79-year-old stage 73-year-old stage 83-year-old stage

Normal Alzheimer disease

Female Male

10x 3' v3 Drop-seq 10x 3' v2

Nucleus

Danio rerio

Hypertrophic chondrocyte Tendon cell Migratory cranial neural crest cell Smooth muscle cell Neural crest cell Connective tissue cell Mesodermal cell Chondroblast Mesenchymal cell Pericyte Chondrocyte

Anterior segment of eyeball Bulbus arteriosus Head Head connective tissue Leptomeninx Meninx Multicellular anatomical structure Neural crest Periocular mesenchyme Pharyngeal arch Trunk neural crest

Pharyngula:prim-15 Hatching:long-pec Larval:protruding-mouth Pharyngula:prim-25 Segmentation:26+ somites Segmentation:14-19 somites Hatching:pec-fin Segmentation:20-25 somites Pharyngula:high-pec Pharyngula:prim-5

Normal

Sci-rna-seq3

Nucleus

Homo sapiens

Cerebral cortex neuron

Brodmann (1909) area 13 Brodmann (1909) area 14 Brodmann (1909) area 19 Brodmann (1909) area 23 Brodmann (1909) area 24 Brodmann (1909) area 25 Brodmann (1909) area 32 Brodmann (1909) area 38 Brodmann (1909) area 40 Brodmann (1909) area 43 Brodmann (1909) area 46 Accessory basal amygdaloid nucleus Agranular insular cortex Anterior cortical amygdaloid nucleus Anterior olfactory nucleus Basolateral amygdaloid nuclear complex Bed nucleus of stria terminalis Central amygdaloid nucleus Claustrum of brain Corticomedial nuclear complex Cuneus cortex Dentate gyrus of hippocampal formation Epithalamus Extrastriate cortex Globus pallidus Granular insular cortex Gray matter of midbrain Hippocampal field Inferior frontal gyrus Inferior temporal gyrus Intralaminar nuclear group Lateral amygdaloid nucleus Lateral entorhinal cortex Lateral geniculate body Lateral posterior nucleus of thalamus Mammillary body Medial entorhinal cortex Medial zone of hypothalamus Midbrain tectum Middle temporal gyrus Nucleus accumbens Perirhinal cortex Piriform cortex Posterior parahippocampal gyrus Preoptic area Pretectal region Primary auditory cortex Primary motor cortex Primary somatosensory cortex Primary visual cortex Putamen Red nucleus Retrosplenial region Septal nuclear complex Subicular complex Substantia innominata Substantia nigra Subthalamic nucleus Superior parietal cortex Superior temporal gyrus Supraoptic nucleus Temporal fusiform gyrus Uncal ca1 Ventral anterior nucleus of thalamus

42-year-old stage 29-year-old stage 50-year-old stage 60-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Mus musculus

Retinal ganglion cell

Normal

10x 3' v3 10x 3' v2

Mus musculus

Retinal ganglion cell

Retina

5-week-old stage 9-week-old stage 4-month-old stage Postnatal stage 12-week-old stage 25-week-old stage 11-week-old stage 7-week-old stage 2-week-old stage 8-week-old stage

Normal

Male

10x 3' v3 10x 3' v2

Cell