Homo sapiens

Medial ganglionic eminence derived interneuron

Brodmann (1909) area 13 Brodmann (1909) area 14 Brodmann (1909) area 19 Brodmann (1909) area 23 Brodmann (1909) area 24 Brodmann (1909) area 25 Brodmann (1909) area 32 Brodmann (1909) area 38 Brodmann (1909) area 40 Brodmann (1909) area 43 Brodmann (1909) area 46 Accessory basal amygdaloid nucleus Agranular insular cortex Anterior cortical amygdaloid nucleus Anterior nuclear group Anterior olfactory nucleus Basolateral amygdaloid nuclear complex Bed nucleus of stria terminalis Body of caudate nucleus Central amygdaloid nucleus Centromedian nucleus of thalamus Cerebellar nuclear complex Claustrum of brain Corticomedial nuclear complex Cuneus cortex Dentate gyrus of hippocampal formation Epithalamus Extrastriate cortex Globus pallidus Granular insular cortex Gray matter of midbrain Hippocampal field Hypothalamus Inferior frontal gyrus Inferior olivary complex Inferior temporal gyrus Intralaminar nuclear group Lateral amygdaloid nucleus Lateral entorhinal cortex Lateral geniculate body Lateral nuclear group of thalamus Lateral posterior nucleus of thalamus Mammillary body Medial dorsal nucleus of thalamus Medial entorhinal cortex Medial geniculate body Medial zone of hypothalamus Median tuberal portion Midbrain tectum Middle temporal gyrus Nucleus accumbens Nucleus of dorsal thalamus Nucleus of medulla oblongata Parabrachial nucleus Perirhinal cortex Piriform cortex Pontine nuclear group Posterior parahippocampal gyrus Preoptic area Pretectal region Primary auditory cortex Primary motor cortex Primary somatosensory cortex Primary visual cortex Pulvinar nucleus Putamen Red nucleus Retrosplenial region Rostral ca3 Septal nuclear complex Subicular complex Substantia innominata Substantia nigra Subthalamic nucleus Superior parietal cortex Superior temporal gyrus Supraoptic nucleus Temporal fusiform gyrus Uncal ca1 Ventral anterior nucleus of thalamus

42-year-old stage 29-year-old stage 50-year-old stage 60-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Intestine goblet cell Best4+ enterocyte Paneth cell Enteroendocrine cell Intestinal crypt stem cell Tuft cell of small intestine Enterocyte Transit amplifying cell Mucous neck cell of gastric gland Foveolar cell of stomach M cell of gut

Duodenal epithelium Duodenum Epithelium of small intestine Ileal epithelium Ileum Ileum lamina propria Jejunum Lamina propria of small intestine Mesenteric lymph node Small intestine

37-year-old stage 13-year-old stage Sixth decade stage 87-year-old stage 52-year-old stage 29-year-old stage 56-year-old stage Fifth decade stage 50-year-old stage 12-year-old stage Third decade stage 9-year-old stage 14-year-old stage Seventh decade stage 25-year-old stage 67-year-old stage 45-year-old stage 60-year-old stage 18-year-old stage 31-year-old stage 36-year-old stage Fourth decade stage 22-year-old stage 20-year-old stage Eighth decade stage Prime adult stage 11-year-old stage 6-year-old stage 10-year-old stage 4-year-old stage

Celiac disease Normal Crohn disease

Female Male

10x 3' v1 10x 5' v2 10x 5' transcription profiling 10x 5' v1 10x 3' v3 10x 3' v2

Cell

Homo sapiens

Endocardial cell Schwann cell Smooth muscle cell Cardiac blood vessel endothelial cell Lymphocyte Adipocyte Macrophage Mesothelial cell Cardiac muscle cell Pericyte Neuron Fibroblast

Right atrium auricular region

Sixth decade stage Fifth decade stage Seventh decade stage Eighth decade stage Ninth decade stage

Heart failure Normal Heart valve disorder Myocardial ischemia

Female Male

10x 3' v3

Nucleus

Homo sapiens

Club cell Ciliated cell Lung secretory cell Neuroendocrine cell Stem cell Basal cell Goblet cell Pulmonary alveolar type 1 cell Pulmonary alveolar type 2 cell

Alveolar sac Bronchus Lung Lung epithelium Nasopharynx

Normal

10x 5' v1 10x 3' v3 10x 3' v2

Cell

Homo sapiens

T cell

Abdomen Abdominal wall Adnexa of uterus Ascitic fluid Caecum Diaphragm Fallopian tube Intestine Large intestine Left ovary Liver Lymph node Omentum Paracolic gutter Parietal peritoneum Peritoneum Right ovary Transverse colon Urinary bladder

66-year-old stage 69-year-old stage 75-year-old stage 71-year-old stage 61-year-old stage 68-year-old stage 56-year-old stage 55-year-old stage 50-year-old stage 57-year-old stage 80 year-old and over stage 58-year-old stage 59-year-old stage 77-year-old stage 64-year-old stage 45-year-old stage 41-year-old stage 70-year-old stage 46-year-old stage 60-year-old stage 78-year-old stage 63-year-old stage 47-year-old stage 76-year-old stage

Malignant ovarian serous tumor

Female

10x 3' v3

Cell

Homo sapiens

Neutrophil Granulocyte Kupffer cell Mast cell Pre-conventional dendritic cell Plasmacytoid dendritic cell Early lymphoid progenitor Common dendritic progenitor Macrophage Myelocyte Promonocyte Hematopoietic stem cell Common myeloid progenitor Hematopoietic multipotent progenitor cell Megakaryocyte Langerhans cell Granulocyte monocyte progenitor cell Promyelocyte Megakaryocyte-erythroid progenitor cell Monocyte Fibroblast Osteoclast Dendritic cell

Bone marrow Gut wall Kidney Liver Mesenteric lymph node Skin of body Spleen Thymus Yolk sac

Carnegie stage 19 13th week post-fertilization stage Carnegie stage 13 14th week post-fertilization stage 15th week post-fertilization stage 17th week post-fertilization stage 12th week post-fertilization stage 16th week post-fertilization stage Carnegie stage 20 9th week post-fertilization stage Carnegie stage 23 10th week post-fertilization stage Carnegie stage 22 11th week post-fertilization stage

Normal

Female Male

10x 5' v1 10x 3' v2

Cell

Homo sapiens

Gamma-delta t cell Alpha-beta t cell Cd8-positive, alpha-beta memory t cell, cd45ro-positive Cd4-positive helper t cell Effector memory cd4-positive, alpha-beta t cell Lymphocyte Cd8-positive, alpha-beta memory t cell Group 3 innate lymphoid cell Naive thymus-derived cd8-positive, alpha-beta t cell Effector memory cd8-positive, alpha-beta t cell, terminally differentiated Cd16-positive, cd56-dim natural killer cell, human Regulatory t cell T follicular helper cell Naive thymus-derived cd4-positive, alpha-beta t cell Mucosal invariant t cell Cd16-negative, cd56-bright natural killer cell, human

Blood Bone marrow Caecum Duodenum Ileum Jejunal epithelium Jejunum lamina propria Liver Lung Mesenteric lymph node Omentum Sigmoid colon Skeletal muscle tissue Spleen Thoracic lymph node Thymus Transverse colon

Sixth decade stage 56-year-old stage Seventh decade stage 67-year-old stage Eighth decade stage

Normal

Female Male

10x 5' v2 10x 5' v1 10x 3' v3

Cell

Homo sapiens

T cell Neutrophil Natural killer cell Mast cell Erythroid lineage cell Plasmacytoid dendritic cell Myeloid dendritic cell Megakaryocyte progenitor cell Myeloid cell Plasma cell Hematopoietic multipotent progenitor cell Malignant cell B cell Monocyte Fibroblast

Bone marrow

Pediatric stage

T-cell childhood acute lymphocytic leukemia

Female Male

10x 5' v2

Cell

Mus musculus

Glutamatergic neuron Oligodendrocyte precursor cell Endothelial cell Oligodendrocyte Vascular leptomeningeal cell Smooth muscle cell Tanycyte Dopaminergic neuron Lymphocyte Ependymal cell Macrophage Microglial cell Neuroblast (sensu vertebrata) Glycinergic neuron Choroid plexus epithelial cell Bergmann glial cell Pericyte Monocyte Astrocyte Dendritic cell Gabaergic neuron

Brain Cerebellum Cortical subplate Hindbrain Hippocampal formation Neocortex Pallidum Striatum Thalamic complex Ventricular system of brain White matter

9-week-old stage

Normal

Male

Merfish

Mus musculus

Glutamatergic neuron Oligodendrocyte precursor cell Endothelial cell Oligodendrocyte Vascular leptomeningeal cell Smooth muscle cell Tanycyte Dopaminergic neuron Lymphocyte Ependymal cell Macrophage Microglial cell Neuroblast (sensu vertebrata) Glycinergic neuron Choroid plexus epithelial cell Bergmann glial cell Pericyte Monocyte Astrocyte Dendritic cell Gabaergic neuron

Brain Cerebellum Cortical subplate Hindbrain Hippocampal formation Neocortex Pallidum Striatum Thalamic complex Ventricular system of brain White matter

9-week-old stage

Normal

Male

Merfish

Mus musculus

Osteoblast Muscle cell Natural killer cell Endothelial cell of lymphatic vessel Erythrocyte Fibroblast of dermis Mast cell Peridermal cell Hypertrophic chondrocyte Tendon cell Basal cell Endothelial cell of artery Schwann cell Melanocyte Smooth muscle cell Epithelial cell Primitive red blood cell Chondroblast Macrophage Innate lymphoid cell Myelocyte Onychocyte Common myeloid progenitor Vein endothelial cell Mesenchymal cell Megakaryocyte Skeletal muscle myoblast Myoblast B cell Pericyte Monocyte Basophil Conventional dendritic cell Hair follicle melanocyte Fibroblast Schwann cell precursor Chondrocyte Muscle fibroblast

Forelimb Hindlimb

Theiler stage 22 Theiler stage 24 Theiler stage 18 Theiler stage 16 Theiler stage 19 Theiler stage 26 Theiler stage 20 Theiler stage 21 Theiler stage 23

Normal

10x 3' v3 10x 3' v2

Cell

Homo sapiens

Granulosa cell Supporting cell Erythrocyte Endothelial cell Smooth muscle cell Epithelial cell Neural cell Ovarian surface epithelial cell Interstitial cell of ovary Mural cell Mesenchymal cell Mesothelial cell Germ cell Hematopoietic cell

Gonad

21st week post-fertilization stage 13th week post-fertilization stage 14th week post-fertilization stage 17th week post-fertilization stage 12th week post-fertilization stage 16th week post-fertilization stage 9th week post-fertilization stage Carnegie stage 23 10th week post-fertilization stage Carnegie stage 21 18th week post-fertilization stage Carnegie stage 17 Carnegie stage 18 11th week post-fertilization stage

Normal

Female

10x 5' v2 10x 5' v1

Cell