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Technology
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Cell
934
Nucleus
679
Data Source
0
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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
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Most cells
Fewest cells
2515
datasets
CELLxGENE
906 cells
•
Almanzar et al., 2020
A single-cell transcriptomic atlas characterizes ageing tissues in the mouse
Explore
h5ad
Mus musculus
Mus musculus
Epithelial cell
+5
Epithelial cell
Aorta
Aorta
3-month-old stage
+2
3-month-old stage
Normal
Normal
Female
+1
Female
Smart-seq2
Smart-seq2
Cell
Cell
Organism
Mus musculus
Cell type
Epithelial cell
Macrophage
Aortic endothelial cell
Professional antigen presenting cell
Circulating fibrocyte
Fibroblast of cardiac tissue
Tissue
Aorta
Developmental stage
3-month-old stage
20-month-old stage and over
18-month-old stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
Suspension type
Cell
Related Links
GSE132042
Processed files
Tabula Muris Senis
SmartSeq2 for HTP Generation of FACS Sorted Single Cell Libraries V.1
github.com
Single Cell Portal
894 cells
Explore
cartptcluster_03_08_2023.rds (rds)
Mus musculus
Mus musculus
Neuron
Neuron
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Neuron
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
CELLxGENE
893 cells
•
Fujimoto et al., 2020
Single-cell mapping reveals new markers and functions of lymphatic endothelial cells in lymph nodes
Explore
h5ad
Mus musculus
Mus musculus
Lymphatic endothelial cell of medulla ceiling
+3
Lymphatic endothelial cell of medulla ceiling
Inguinal lymph node
Inguinal lymph node
2-month-old stage
2-month-old stage
Normal
Normal
Female
Female
Smart-seq2
Smart-seq2
Cell
Cell
Organism
Mus musculus
Cell type
Lymphatic endothelial cell of medulla ceiling
Lymph node lymphatic vessel endothelial cell
Lymphatic endothelial cell of subcapsular sinus ceiling
Lymphatic endothelial cell of subcapsular sinus floor
Tissue
Inguinal lymph node
Developmental stage
2-month-old stage
Disease
Normal
Sex
Female
Technology
Smart-seq2
Suspension type
Cell
Related Links
E-MTAB-8414
Single Cell Portal
879 cells
Explore
Mus musculus
Mus musculus
Granule cell
+1
Granule cell
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Granule cell
Purkinje cell
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
CELLxGENE
873 cells
•
Braun et al., 2023
Comprehensive cell atlas of the first-trimester developing human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Neuroplacodal cell
Neuroplacodal cell
Medulla oblongata
+5
Medulla oblongata
Carnegie stage 20
+4
Carnegie stage 20
Normal
Normal
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Neuroplacodal cell
Tissue
Medulla oblongata
Hindbrain
Midbrain
Cerebellum
Forebrain
Head
Developmental stage
Carnegie stage 20
9th week post-fertilization stage
10th week post-fertilization stage
Carnegie stage 16
Carnegie stage 15
Disease
Normal
Sex
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
Github
EGAD00001006049
CELLxGENE
871 cells
•
Braun et al., 2023
Comprehensive cell atlas of the first-trimester developing human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Neural crest cell
Neural crest cell
Striatum
+14
Striatum
13th week post-fertilization stage
+8
13th week post-fertilization stage
Normal
Normal
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Neural crest cell
Tissue
Striatum
Medulla oblongata
Hindbrain
Cortex
Midbrain
Lower layers of the cortex
Metencephalon
Basal forebrain
Cerebellum
Hypothalamus
Cerebellar peduncular complex
Pons
Cerebral subcortex
Forebrain
Head
Developmental stage
13th week post-fertilization stage
14th week post-fertilization stage
15th week post-fertilization stage
12th week post-fertilization stage
Carnegie stage 20
9th week post-fertilization stage
10th week post-fertilization stage
Carnegie stage 16
Carnegie stage 15
Disease
Normal
Sex
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
Github
EGAD00001006049
Single Cell Portal
844 cells
Explore
Mus musculus
Mus musculus
Obsolete inhibitory neuron
+3
Obsolete inhibitory neuron
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Obsolete inhibitory neuron
Oligodendrocyte precursor cell
Obsolete excitatory neuron
Astrocyte
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD699) (section 368)
CELLxGENE
843 cells
•
Yayon et al., 2024
A spatial human thymus cell atlas mapped to a continuous tissue axis
Explore
h5ad
Homo sapiens
Homo sapiens
Neutrophil
+6
Neutrophil
Thymus
Thymus
13th week post-fertilization stage
+11
13th week post-fertilization stage
Normal
Normal
Female
+1
Female
10x 5' v2
+3
10x 5' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Neutrophil
Erythrocyte
Myelocyte
Promonocyte
Common myeloid progenitor
Granulocyte monocyte progenitor cell
Monocyte
Tissue
Thymus
Developmental stage
13th week post-fertilization stage
3-month-old stage
14th week post-fertilization stage
15th week post-fertilization stage
20th week post-fertilization stage
17th week post-fertilization stage
12th week post-fertilization stage
6-month-old stage
18th week post-fertilization stage
Newborn stage (0-28 days)
24th week post-fertilization stage
14-month-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 5' v2
10x 5' v1
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
github.com
BioImage Archive
PRJEB77091
EGAD00001015384
E-MTAB-8581
GSE271304
GSE206710
CITE-seq
TissueTag github
CELLxGENE
810 cells
•
Szabo et al., 2021
Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19
Explore
h5ad
Homo sapiens
Homo sapiens
Neutrophil
+6
Neutrophil
Respiratory airway
Respiratory airway
74-year-old stage
74-year-old stage
Covid-19
Covid-19
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Neutrophil
Erythrocyte
Mature nk t cell
Ionocyte
Epithelial cell
Myeloid cell
B cell
Tissue
Respiratory airway
Developmental stage
74-year-old stage
Disease
Covid-19
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
data.mendeley.com
github.com
covid19cellatlas.org
Single Cell Portal
805 cells
Explore
Mus musculus
Mus musculus
Brain microvascular endothelial cell
+2
Brain microvascular endothelial cell
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Brain microvascular endothelial cell
Obsolete excitatory neuron
Astrocyte
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD711) (section 133)
Corresponding registered brain section (MD711) (section 134)
Corresponding registered brain section (MD711) (section 135)
Corresponding registered brain section (MD711) (section 136)
Corresponding registered brain section (MD711) (section 137)
Corresponding registered brain section (MD711) (section 138)
CELLxGENE
796 cells
•
Duclos et al., 2019
Characterizing smoking-induced transcriptional heterogeneity in the human bronchial epithelium at single-cell resolution
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+8
T cell
Epithelium of main bronchus
Epithelium of main bronchus
34-year-old stage
+10
34-year-old stage
Normal
Normal
Female
+1
Female
Cel-seq
Cel-seq
Cell
Cell
Organism
Homo sapiens
Cell type
T cell
Club cell
Lung secretory cell
Bronchial goblet cell
Multiciliated epithelial cell of the bronchus
Pulmonary ionocyte
Respiratory tract epithelial cell
Deuterosomal cell
Basal cell of epithelium of bronchus
Tissue
Epithelium of main bronchus
Developmental stage
34-year-old stage
26-year-old stage
43-year-old stage
44-year-old stage
50-year-old stage
51-year-old stage
49-year-old stage
24-year-old stage
35-year-old stage
25-year-old stage
27-year-old stage
Disease
Normal
Sex
Female
Male
Technology
Cel-seq
Suspension type
Cell
Related Links
GSE131391
ASAP
v8
796 cells
•
Duclos et al., 2019
Characterizing smoking-induced transcriptional heterogeneity in the human bronchial epithelium at single-cell resolution
Explore
h5ad
Homo sapiens
Homo sapiens
Organism
Homo sapiens
Cell type
Tissue
Developmental stage
Disease
Sex
Technology
Suspension type
Related Links
ncbi.nlm.nih.gov
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