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Cell Type
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Tissue
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Disease
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Sex
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Technology
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Cell
934
Nucleus
679
Data Source
0
Clear
ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
Sort
Most cells
Fewest cells
2515
datasets
Single Cell Portal
779 cells
Explore
Mus musculus
Mus musculus
Obsolete inhibitory neuron
+2
Obsolete inhibitory neuron
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Obsolete inhibitory neuron
Oligodendrocyte
Obsolete excitatory neuron
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD710) (section 121)
Corresponding registered brain section (MD710) (section 122)
Corresponding registered brain section (MD710) (section 123)
Corresponding registered brain section (MD710) (section 124)
Corresponding registered brain section (MD710) (section 125)
Corresponding registered brain section (MD710) (section 126)
Single Cell Portal
745 cells
Explore
Mus musculus
Mus musculus
Obsolete inhibitory neuron
+4
Obsolete inhibitory neuron
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Obsolete inhibitory neuron
Oligodendrocyte precursor cell
Oligodendrocyte
Astrocyte of the cerebellum
Brain microvascular endothelial cell
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD711) (section 277)
Corresponding registered brain section (MD711) (section 278)
Single Cell Portal
713 cells
Explore
Mus musculus
Mus musculus
Obsolete inhibitory neuron
+2
Obsolete inhibitory neuron
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Obsolete inhibitory neuron
Obsolete excitatory neuron
Astrocyte
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
CELLxGENE
706 cells
•
Apostolov et al., 2024
Profiling of epithelial functional states and fibroblast phenotypes in hormone therapy-naïve localised prostate cancer
Explore
h5ad
Homo sapiens
Homo sapiens
B cell
B cell
Prostate gland
Prostate gland
69-year-old stage
+14
69-year-old stage
Prostatic acinar adenocarcinoma
Prostatic acinar adenocarcinoma
Male
Male
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
B cell
Tissue
Prostate gland
Developmental stage
69-year-old stage
75-year-old stage
71-year-old stage
61-year-old stage
54-year-old stage
68-year-old stage
72-year-old stage
59-year-old stage
64-year-old stage
45-year-old stage
62-year-old stage
70-year-old stage
46-year-old stage
60-year-old stage
63-year-old stage
Disease
Prostatic acinar adenocarcinoma
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
GSE145843
CELLxGENE
703 cells
•
Sampath Kumar et al., 2023
Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis
Explore
h5ad
Mus musculus
Mus musculus
Cardiac valve cell
+14
Cardiac valve cell
Embryo
Embryo
Theiler stage 14
Theiler stage 14
Normal
Normal
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Cardiac valve cell
Spinal cord interneuron
Premigratory neural crest cell
Paraxial cell
Notochordal cell
Neuroplacodal cell
Neurectodermal cell
Hemangioblast
Mesodermal cell
Primitive red blood cell
Splanchnic mesodermal cell
Surface ectodermal cell
Midbrain dopaminergic neuron
Endodermal cell
Anterior visceral endoderm cell
Tissue
Embryo
Developmental stage
Theiler stage 14
Disease
Normal
Sex
Technology
Slide-seqv2
Suspension type
Related Links
insitubiology.org
GSE197353
figshare.com
figshare.com
figshare.com
CELLxGENE
649 cells
•
He et al., 2022
A human fetal lung cell atlas uncovers proximal-distal gradients of differentiation and key regulators of epithelial fates
Explore
h5ad
Homo sapiens
Homo sapiens
Schwann cell
+4
Schwann cell
Lung
Lung
Carnegie stage 19
+7
Carnegie stage 19
Normal
Normal
Female
+1
Female
10x 5' v1
10x 5' v1
Cell
Cell
Organism
Homo sapiens
Cell type
Schwann cell
Immature schwann cell
Neuron
Neural progenitor cell
Schwann cell precursor
Tissue
Lung
Developmental stage
Carnegie stage 19
15th week post-fertilization stage
20th week post-fertilization stage
9th week post-fertilization stage
18th week post-fertilization stage
22nd week post-fertilization stage
Carnegie stage 16
11th week post-fertilization stage
Disease
Normal
Sex
Female
Male
Technology
10x 5' v1
Suspension type
Cell
Related Links
scRNA / GEX / VDJ (E-MTAB-11278)
Organoid (E-MTAB-11267)
Visium (E-MTAB-11265)
ATAC-seq (E-MTAB-11266)
fetal-lung.cellgeni.sanger.ac.uk
genome.ucsc.edu
github.com
CELLxGENE
637 cells
•
Johansen et al., 2023
Interindividual variation in human cortical cell type abundance and expression
Explore
h5ad
Homo sapiens
Homo sapiens
Vascular leptomeningeal cell
Vascular leptomeningeal cell
Neocortex
Neocortex
Adult stage
Adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Vascular leptomeningeal cell
Tissue
Neocortex
Developmental stage
Adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
Allen Brain Map
Reference middle temporal gyrus taxonomy
Allen Brain Map Patch-seq
assets.nemoarchive.org
github.com
CELLxGENE
636 cells
•
Scala et al., 2020
Phenotypic variation of transcriptomic cell types in mouse motor cortex
Explore
h5ad
Mus musculus
Mus musculus
Glutamatergic neuron
+1
Glutamatergic neuron
Primary motor cortex
Primary motor cortex
22-week-old stage
+22
22-week-old stage
Normal
Normal
Female
+1
Female
Patch-seq
Patch-seq
Cell
Cell
Organism
Mus musculus
Cell type
Glutamatergic neuron
Gabaergic neuron
Tissue
Primary motor cortex
Developmental stage
22-week-old stage
5-week-old stage
9-week-old stage
15-week-old stage
13-week-old stage
24-week-old stage
26-week-old stage
12-week-old stage
20-week-old stage
14-week-old stage
29-week-old stage
19-week-old stage
18-week-old stage
25-week-old stage
11-week-old stage
7-week-old stage
6-week-old stage
8-month-old stage
10-week-old stage
23-week-old stage
17-week-old stage
16-week-old stage
8-week-old stage
Disease
Normal
Sex
Female
Male
Technology
Patch-seq
Suspension type
Cell
Related Links
toliaslab.org
assets.nemoarchive.org
CELLxGENE
628 cells
•
Scala et al., 2020
Phenotypic variation of transcriptomic cell types in mouse motor cortex
Explore
h5ad
Mus musculus
Mus musculus
Glutamatergic neuron
+1
Glutamatergic neuron
Primary motor cortex
Primary motor cortex
22-week-old stage
+22
22-week-old stage
Normal
Normal
Female
+1
Female
Patch-seq
Patch-seq
Cell
Cell
Organism
Mus musculus
Cell type
Glutamatergic neuron
Gabaergic neuron
Tissue
Primary motor cortex
Developmental stage
22-week-old stage
5-week-old stage
9-week-old stage
15-week-old stage
13-week-old stage
24-week-old stage
26-week-old stage
12-week-old stage
20-week-old stage
14-week-old stage
29-week-old stage
19-week-old stage
18-week-old stage
25-week-old stage
11-week-old stage
7-week-old stage
6-week-old stage
8-month-old stage
10-week-old stage
23-week-old stage
17-week-old stage
16-week-old stage
8-week-old stage
Disease
Normal
Sex
Female
Male
Technology
Patch-seq
Suspension type
Cell
Related Links
toliaslab.org
assets.nemoarchive.org
ASAP
v5
607 cells
•
Li et al., 2022
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly
Explore
h5ad
Drosophila melanogaster
Drosophila melanogaster
Mechanosensory neuron of leg chordotonal organ
+6
Mechanosensory neuron of leg chordotonal organ
Leg
Leg
Day 5 of adulthood
Day 5 of adulthood
Normal
Normal
Female
+1
Female
Smart-seq2
Smart-seq2
Organism
Drosophila melanogaster
Cell type
Mechanosensory neuron of leg chordotonal organ
Gustatory receptor neuron
Hemocyte
Epithelial cell
Muscle cell
Mechanosensory neuron
Sensory neuron
Tissue
Leg
Developmental stage
Day 5 of adulthood
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
Suspension type
ASAP
v5
594 cells
•
Li et al., 2022
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly
Explore
h5ad
Drosophila melanogaster
Drosophila melanogaster
Midgut large flat cell
+9
Midgut large flat cell
Gut
Gut
Day 5 of adulthood
Day 5 of adulthood
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Organism
Drosophila melanogaster
Cell type
Midgut large flat cell
Enteroendocrine cell
Adult midgut enterocyte
Copper cell
Muscle cell
Enterocyte of anterior adult midgut epithelium
Intestinal stem cell
Enterocyte of posterior adult midgut epithelium
Enteroblast
Adult differentiating enterocyte
Tissue
Gut
Developmental stage
Day 5 of adulthood
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
CELLxGENE
582 cells
•
Johansen et al., 2023
Interindividual variation in human cortical cell type abundance and expression
Explore
h5ad
Homo sapiens
Homo sapiens
Cerebral cortex endothelial cell
Cerebral cortex endothelial cell
Neocortex
Neocortex
Adult stage
Adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Cerebral cortex endothelial cell
Tissue
Neocortex
Developmental stage
Adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
Allen Brain Map
Reference middle temporal gyrus taxonomy
Allen Brain Map Patch-seq
assets.nemoarchive.org
github.com
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