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Cell Type
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Tissue
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Disease
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Sex
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Technology
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Cell
934
Nucleus
679
Data Source
0
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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
Sort
Most cells
Fewest cells
2515
datasets
Bgee
1,205 cells
•
Scialdone et al., 2016
Resolving early mesoderm diversification through single-cell expression profiling
Explore
scRNA-Seq full-length processed expression values per cell population in Mus musculus (tsv.gz)
scRNA-Seq full-length H5AD data per cell in Mus musculus (h5ad)
Mus musculus
Mus musculus
Mesodermal cell
+1
Mesodermal cell
Embryo
Embryo
Theiler stage 11c
+3
Theiler stage 11c
Normal
Normal
Smart-seq2
Smart-seq2
Organism
Mus musculus
Cell type
Mesodermal cell
Epiblast cell
Tissue
Embryo
Developmental stage
Theiler stage 11c
Neurula stage
Theiler stage 09
Theiler stage 10
Disease
Normal
Sex
Technology
Smart-seq2
Suspension type
Related Links
ncbi.nlm.nih.gov
CELLxGENE
1,203 cells
•
Moorman et al., 2025
Author Correction: Progressive plasticity during colorectal cancer metastasis
Explore
h5ad
Homo sapiens
Homo sapiens
Malignant cell
Malignant cell
Liver
+1
Liver
55-year-old stage
55-year-old stage
Colorectal cancer
Colorectal cancer
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Malignant cell
Tissue
Liver
Sigmoid colon
Developmental stage
55-year-old stage
Disease
Colorectal cancer
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
Github
CELLxGENE
1,096 cells
•
Apostolov et al., 2024
Profiling of epithelial functional states and fibroblast phenotypes in hormone therapy-naïve localised prostate cancer
Explore
h5ad
Homo sapiens
Homo sapiens
Glial cell
+1
Glial cell
Prostate gland
Prostate gland
69-year-old stage
+14
69-year-old stage
Prostatic acinar adenocarcinoma
Prostatic acinar adenocarcinoma
Male
Male
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Glial cell
Myelinating schwann cell
Tissue
Prostate gland
Developmental stage
69-year-old stage
75-year-old stage
71-year-old stage
61-year-old stage
54-year-old stage
68-year-old stage
72-year-old stage
59-year-old stage
64-year-old stage
45-year-old stage
62-year-old stage
70-year-old stage
46-year-old stage
60-year-old stage
63-year-old stage
Disease
Prostatic acinar adenocarcinoma
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
GSE145843
Single Cell Portal
1,092 cells
•
Ziegler et al., 2020
SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues
Explore
Macaca fascicularis
Macaca fascicularis
Secretory cell
+3
Secretory cell
Tuberculosis
Tuberculosis
Seq-well
Seq-well
Organism
Macaca fascicularis
Cell type
Secretory cell
Pulmonary alveolar type 1 cell
Ciliated epithelial cell
Pulmonary alveolar type 2 cell
Tissue
Developmental stage
Disease
Tuberculosis
Sex
Technology
Seq-well
Suspension type
Related Links
cellxgene.cziscience.com
CELLxGENE
1,074 cells
•
Szabo et al., 2021
Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19
Explore
h5ad
Homo sapiens
Homo sapiens
Neutrophil
+6
Neutrophil
Respiratory airway
Respiratory airway
82-year-old stage
82-year-old stage
Covid-19
Covid-19
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Neutrophil
Erythrocyte
Mature nk t cell
Mast cell
Epithelial cell
Myeloid cell
B cell
Tissue
Respiratory airway
Developmental stage
82-year-old stage
Disease
Covid-19
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
data.mendeley.com
github.com
covid19cellatlas.org
CELLxGENE
1,062 cells
•
de Morree et al., 2025
A molecular cell atlas of mouse lemur, an emerging model primate
Explore
h5ad
Microcebus murinus
Microcebus murinus
Neutrophil
+10
Neutrophil
Retina
Retina
Post-juvenile adult stage
Post-juvenile adult stage
Normal
Normal
Male
Male
Smart-seq2
+1
Smart-seq2
Cell
Cell
Organism
Microcebus murinus
Cell type
Neutrophil
Non-myelinating schwann cell
Off-bipolar cell
Erythroid lineage cell
On-bipolar cell
Retinal bipolar neuron
Macrophage
Retinal cone cell
Retinal rod cell
Retina horizontal cell
Mueller cell
Tissue
Retina
Developmental stage
Post-juvenile adult stage
Disease
Normal
Sex
Male
Technology
Smart-seq2
10x 3' v2
Suspension type
Cell
Related Links
tabula-microcebus.sf.czbiohub.org
cells.ucsc.edu
Globus
ASAP
v8
1,062 cells
•
de Morree et al., 2025
A molecular cell atlas of mouse lemur, an emerging model primate
Explore
h5ad
Microcebus murinus
Microcebus murinus
Organism
Microcebus murinus
Cell type
Tissue
Developmental stage
Disease
Sex
Technology
Suspension type
CELLxGENE
1,011 cells
•
Andrews et al., 2024
Single-cell, single-nucleus, and spatial transcriptomics characterization of the immunological landscape in the healthy and PSC human liver
Explore
h5ad
Homo sapiens
Homo sapiens
Intrahepatic cholangiocyte
Intrahepatic cholangiocyte
Caudate lobe of liver
Caudate lobe of liver
Late adult stage
+2
Late adult stage
Normal
Normal
Female
+1
Female
10x 5' v1
+1
10x 5' v1
Cell
Cell
Organism
Homo sapiens
Cell type
Intrahepatic cholangiocyte
Tissue
Caudate lobe of liver
Developmental stage
Late adult stage
Prime adult stage
Young adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 5' v1
10x 3' v2
Suspension type
Cell
Related Links
MacParland et al. (2018) Nature
GSE240429
GSE115469
GSE243977
GSE247128
GSE245620
ASAP
v7
1,000 cells
Explore
h5ad
Mus musculus
Mus musculus
Retina
Retina
Organism
Mus musculus
Cell type
Tissue
Retina
Developmental stage
Disease
Sex
Technology
Suspension type
CELLxGENE
959 cells
•
Anderson-Crannage et al., 2023
Inflammation-mediated fibroblast activation and immune dysregulation in collagen VII-deficient skin
Explore
h5ad
Mus musculus
Mus musculus
Neutrophil
+8
Neutrophil
Autopod skin
Autopod skin
2-week-old stage
2-week-old stage
Epidermolysis bullosa
+1
Epidermolysis bullosa
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Mus musculus
Cell type
Neutrophil
Endothelial cell
Schwann cell
Fibroblast of lymphatic vessel
Innate lymphoid cell
Pericyte
Professional antigen presenting cell
Fibroblast
Chondrocyte
Tissue
Autopod skin
Developmental stage
2-week-old stage
Disease
Epidermolysis bullosa
Normal
Sex
Technology
10x 3' v3
Suspension type
Cell
Related Links
GSE222250
CELLxGENE
955 cells
•
Kanemaru et al., 2023
Spatially resolved multiomics of human cardiac niches
Explore
h5ad
Homo sapiens
Homo sapiens
Regular atrial cardiac myocyte
Regular atrial cardiac myocyte
Atrioventricular node
Atrioventricular node
Fifth decade stage
+1
Fifth decade stage
Normal
Normal
Female
+1
Female
10x multiome
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Regular atrial cardiac myocyte
Tissue
Atrioventricular node
Developmental stage
Fifth decade stage
Eighth decade stage
Disease
Normal
Sex
Female
Male
Technology
10x multiome
Suspension type
Nucleus
Related Links
heartcellatlas.org
multiome snRNA-seq (E-MTAB-12916)
multiome snATAC-seq (E-MTAB-12919)
Visium (E-MTAB-12975)
explore.data.humancellatlas.org
CELLxGENE
935 cells
•
Moorman et al., 2025
Author Correction: Progressive plasticity during colorectal cancer metastasis
Explore
h5ad
Homo sapiens
Homo sapiens
Malignant cell
Malignant cell
Liver
+2
Liver
44-year-old stage
44-year-old stage
Colorectal cancer
Colorectal cancer
Male
Male
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Malignant cell
Tissue
Liver
Rectum
Chest wall
Developmental stage
44-year-old stage
Disease
Colorectal cancer
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
Github
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