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Cell Type
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Technology
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Cell
934
Nucleus
679
Data Source
0
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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
Sort
Most cells
Fewest cells
2515
datasets
CELLxGENE
1,374 cells
•
Andrews et al., 2021
Single‐Cell, Single‐Nucleus, and Spatial RNA Sequencing of the Human Liver Identifies Cholangiocyte and Mesenchymal Heterogeneity
Explore
h5ad
Homo sapiens
Homo sapiens
Hepatic stellate cell
+2
Hepatic stellate cell
Caudate lobe of liver
Caudate lobe of liver
Prime adult stage
+1
Prime adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Nucleus
+1
Nucleus
Organism
Homo sapiens
Cell type
Hepatic stellate cell
Vascular associated smooth muscle cell
Fibroblast
Tissue
Caudate lobe of liver
Developmental stage
Prime adult stage
Young adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Nucleus
Cell
Related Links
github.com
GSE185477
explore.data.humancellatlas.org
protocols.io
macparlandlab.shinyapps.io
ASAP
v5
1,349 cells
•
Li et al., 2022
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly
Explore
h5ad
Drosophila melanogaster
Drosophila melanogaster
Hemocyte
+5
Hemocyte
Fat body
Fat body
Day 5 of adulthood
Day 5 of adulthood
Normal
Normal
Female
+1
Female
Smart-seq2
Smart-seq2
Organism
Drosophila melanogaster
Cell type
Hemocyte
Epithelial cell
Muscle cell
Adult neuron
Sensory neuron
Adult oenocyte
Tissue
Fat body
Developmental stage
Day 5 of adulthood
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
Suspension type
CELLxGENE
1,336 cells
•
Sampath Kumar et al., 2023
Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis
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h5ad
Mus musculus
Mus musculus
Cardiac valve cell
+15
Cardiac valve cell
Embryo
Embryo
Theiler stage 14
Theiler stage 14
Normal
Normal
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Cardiac valve cell
Spinal cord interneuron
Premigratory neural crest cell
Paraxial cell
Notochordal cell
Neuroplacodal cell
Neurectodermal cell
Hemangioblast
Mesodermal cell
Gut endothelial cell
Primitive red blood cell
Splanchnic mesodermal cell
Surface ectodermal cell
Midbrain dopaminergic neuron
Endodermal cell
Anterior visceral endoderm cell
Tissue
Embryo
Developmental stage
Theiler stage 14
Disease
Normal
Sex
Technology
Slide-seqv2
Suspension type
Related Links
insitubiology.org
GSE197353
figshare.com
figshare.com
figshare.com
CELLxGENE
1,324 cells
•
Rodríguez-Ubreva et al., 2022
Single-cell Atlas of common variable immunodeficiency shows germinal center-associated epigenetic dysregulation in B-cell responses
Explore
h5ad
Homo sapiens
Homo sapiens
Unswitched memory b cell
+2
Unswitched memory b cell
Blood
Blood
26-year-old stage
26-year-old stage
Normal
+1
Normal
Male
Male
Smart-seq2
Smart-seq2
Cell
Cell
Organism
Homo sapiens
Cell type
Unswitched memory b cell
Naive b cell
Class switched memory b cell
Tissue
Blood
Developmental stage
26-year-old stage
Disease
Normal
Common variable immunodeficiency
Sex
Male
Technology
Smart-seq2
Suspension type
Cell
Related Links
scBS-seq data (PRJEB50820)
Smart-seq2 data, scATAC-seq data and 10x-Genomics Chromium droplet-based scRNA-seq data (EGAD00001008575)
VenTo Lab
Epigenetics and Immune Disease Laboratory
Common Variable Immunodeficiency Cell Atlas
Analysis scripts
CELLxGENE
1,324 cells
•
Szabo et al., 2021
Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19
Explore
h5ad
Homo sapiens
Homo sapiens
Neutrophil
+6
Neutrophil
Respiratory airway
Respiratory airway
74-year-old stage
74-year-old stage
Covid-19
Covid-19
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Neutrophil
Mature nk t cell
Mast cell
Epithelial cell
Myeloid cell
Plasma cell
B cell
Tissue
Respiratory airway
Developmental stage
74-year-old stage
Disease
Covid-19
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
data.mendeley.com
github.com
covid19cellatlas.org
CELLxGENE
1,320 cells
•
Scala et al., 2020
Phenotypic variation of transcriptomic cell types in mouse motor cortex
Explore
h5ad
Mus musculus
Mus musculus
Glutamatergic neuron
+1
Glutamatergic neuron
Primary motor cortex
Primary motor cortex
22-week-old stage
+23
22-week-old stage
Normal
Normal
Female
+1
Female
Patch-seq
Patch-seq
Cell
Cell
Organism
Mus musculus
Cell type
Glutamatergic neuron
Gabaergic neuron
Tissue
Primary motor cortex
Developmental stage
22-week-old stage
5-week-old stage
9-week-old stage
15-week-old stage
13-week-old stage
24-week-old stage
21-week-old stage
26-week-old stage
12-week-old stage
20-week-old stage
14-week-old stage
29-week-old stage
19-week-old stage
18-week-old stage
25-week-old stage
11-week-old stage
7-week-old stage
6-week-old stage
8-month-old stage
10-week-old stage
23-week-old stage
17-week-old stage
16-week-old stage
8-week-old stage
Disease
Normal
Sex
Female
Male
Technology
Patch-seq
Suspension type
Cell
Related Links
toliaslab.org
assets.nemoarchive.org
CELLxGENE
1,295 cells
•
Joseph et al., 2020
Urethral luminal epithelia are castration‐insensitive cells of the proximal prostate
Explore
h5ad
Homo sapiens
Homo sapiens
Fibroblast of connective tissue of prostate
+1
Fibroblast of connective tissue of prostate
Transition zone of prostate
+1
Transition zone of prostate
29-year-old stage
+4
29-year-old stage
Benign prostatic hyperplasia
+1
Benign prostatic hyperplasia
Male
Male
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Fibroblast of connective tissue of prostate
Smooth muscle cell of prostate
Tissue
Transition zone of prostate
Peripheral zone of prostate
Developmental stage
29-year-old stage
57-year-old stage
72-year-old stage
74-year-old stage
31-year-old stage
Disease
Benign prostatic hyperplasia
Normal
Sex
Male
Technology
10x 3' v2
Suspension type
Cell
Related Links
strandlab.net
Human Raw Data
Mouse Raw Data
www.gudmap.org
CELLxGENE
1,284 cells
•
Alkaslasi et al., 2021
Single nucleus RNA-sequencing defines unexpected diversity of cholinergic neuron types in the adult mouse spinal cord
Explore
h5ad
Mus musculus
Mus musculus
Motor neuron
Motor neuron
Cervical spinal cord
+2
Cervical spinal cord
8-week-old stage
8-week-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Mus musculus
Cell type
Motor neuron
Tissue
Cervical spinal cord
Thoracic spinal cord
Lumbar spinal cord
Developmental stage
8-week-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
CELLxGENE
1,281 cells
•
Article
Explore
h5ad
Mus musculus
Mus musculus
Schwann cell
+2
Schwann cell
Cranial neural crest
Cranial neural crest
Theiler stage 22
+5
Theiler stage 22
Normal
Normal
10x multiome
+1
10x multiome
Nucleus
Nucleus
Organism
Mus musculus
Cell type
Schwann cell
Melanocyte
Neural crest cell
Tissue
Cranial neural crest
Developmental stage
Theiler stage 22
Theiler stage 17
Theiler stage 19
Theiler stage 20
Theiler stage 21
Theiler stage 23
Disease
Normal
Sex
Technology
10x multiome
10x 3' v3
Suspension type
Nucleus
Related Links
zenodo.org
github.com
Human snRNA
Mouse snRNA
CELLxGENE
1,250 cells
•
Andrews et al., 2024
Single-cell, single-nucleus, and spatial transcriptomics characterization of the immunological landscape in the healthy and PSC human liver
Explore
h5ad
Homo sapiens
Homo sapiens
Plasmablast
+2
Plasmablast
Caudate lobe of liver
Caudate lobe of liver
Late adult stage
+2
Late adult stage
Normal
Normal
Female
+1
Female
10x 5' v1
+1
10x 5' v1
Cell
Cell
Organism
Homo sapiens
Cell type
Plasmablast
B cell
Naive b cell
Tissue
Caudate lobe of liver
Developmental stage
Late adult stage
Prime adult stage
Young adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 5' v1
10x 3' v2
Suspension type
Cell
Related Links
MacParland et al. (2018) Nature
GSE240429
GSE115469
GSE243977
GSE247128
GSE245620
CELLxGENE
1,248 cells
•
Isola et al., 2024
A single-cell atlas of the aging mouse ovary
Explore
h5ad
Mus musculus
Mus musculus
Granulosa cell
+3
Granulosa cell
Ovary
Ovary
3-month-old stage
+1
3-month-old stage
Normal
Normal
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Mus musculus
Cell type
Granulosa cell
Endothelial cell of lymphatic vessel
Epithelial cell
Endothelial cell of vascular tree
Tissue
Ovary
Developmental stage
3-month-old stage
9-month-old stage
Disease
Normal
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
GSE232309
github.com
omrf.shinyapps.io
Single Cell Portal
1,226 cells
Explore
serotoninneurons_03_08_2023.rds (rds)
Mus musculus
Mus musculus
Neuron
Neuron
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Neuron
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
1
2
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