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Disease
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Technology
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Cell
934
Nucleus
679
Data Source
0
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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
Sort
Most cells
Fewest cells
2515
datasets
CELLxGENE
1,837 cells
•
Nguyen et al., 2021
Single-nucleus transcriptomic analysis of human dorsal root ganglion neurons
Explore
h5ad
Homo sapiens
Homo sapiens
Sensory neuron of dorsal root ganglion
Sensory neuron of dorsal root ganglion
Dorsal root ganglion
Dorsal root ganglion
34-year-old stage
+3
34-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Sensory neuron of dorsal root ganglion
Tissue
Dorsal root ganglion
Developmental stage
34-year-old stage
55-year-old stage
35-year-old stage
36-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Nucleus
Related Links
GSE168243
PMC8626086
CELLxGENE
1,833 cells
•
Almanzar et al., 2020
A single-cell transcriptomic atlas characterizes ageing tissues in the mouse
Explore
h5ad
Mus musculus
Mus musculus
T cell
+9
T cell
Kidney
Kidney
3-month-old stage
+2
3-month-old stage
Normal
Normal
Female
+1
Female
Smart-seq2
Smart-seq2
Cell
Cell
Organism
Mus musculus
Cell type
T cell
Kidney collecting duct epithelial cell
Kidney interstitial fibroblast
Epithelial cell of proximal tubule
Macrophage
Fenestrated endothelial cell
Kidney collecting duct principal cell
Mesangial cell
B cell
Kidney loop of henle ascending limb epithelial cell
Tissue
Kidney
Developmental stage
3-month-old stage
20-month-old stage and over
18-month-old stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
Suspension type
Cell
Related Links
GSE132042
Processed files
Tabula Muris Senis
SmartSeq2 for HTP Generation of FACS Sorted Single Cell Libraries V.1
github.com
Single Cell Portal
1,825 cells
Explore
MCAO_norExpr_metaanalysis_OPC.h5ad (h5ad)
Mus musculus
Mus musculus
Oligodendrocyte precursor cell
Oligodendrocyte precursor cell
Brain ischemia
+1
Brain ischemia
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Oligodendrocyte precursor cell
Tissue
Developmental stage
Disease
Brain ischemia
Normal
Sex
Technology
10x 3' v2
Suspension type
CELLxGENE
1,790 cells
•
McGlade et al., 2021
Cell‐type specific analysis of physiological action of estrogen in mouse oviducts
Explore
h5ad
Homo sapiens
Homo sapiens
Blood vessel endothelial cell
+6
Blood vessel endothelial cell
Fallopian tube
Fallopian tube
Prime adult stage
Prime adult stage
Normal
Normal
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Blood vessel endothelial cell
Cell
Fallopian tube secretory epithelial cell
Endothelial cell
Lymphocyte
Macrophage
Myeloid leukocyte
Tissue
Fallopian tube
Developmental stage
Prime adult stage
Disease
Normal
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
GSE164291
github.com
CELLxGENE
1,789 cells
•
Govek et al., 2022
Combined single-cell RNA-seq profiling and enhancer editing reveals critical spatiotemporal controls over thalamic nuclei formation in the murine embryo
Explore
h5ad
Mus musculus
Mus musculus
Gabaergic neuron
+1
Gabaergic neuron
Diencephalon
Diencephalon
Theiler stage 20
Theiler stage 20
Normal
Normal
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Mus musculus
Cell type
Gabaergic neuron
Neural progenitor cell
Tissue
Diencephalon
Developmental stage
Theiler stage 20
Disease
Normal
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Single Cell Portal
1,781 cells
Explore
Mus musculus
Mus musculus
T cell
+5
T cell
Normal
Normal
Mixed sex
Mixed sex
10x 3' v3
10x 3' v3
Organism
Mus musculus
Cell type
T cell
Neutrophil
Stromal cell
Macrophage
B cell
Dendritic cell
Tissue
Developmental stage
Disease
Normal
Sex
Mixed sex
Technology
10x 3' v3
Suspension type
CELLxGENE
1,777 cells
•
Orozco et al., 2020
Integration of eQTL and a Single-Cell Atlas in the Human Eye Identifies Causal Genes for Age-Related Macular Degeneration
Explore
h5ad
Homo sapiens
Homo sapiens
Off retinal ganglion cell
+2
Off retinal ganglion cell
Retina
Retina
65-year-old stage
+3
65-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Off retinal ganglion cell
Retinal ganglion cell
On retinal ganglion cell
Tissue
Retina
Developmental stage
65-year-old stage
77-year-old stage
70-year-old stage
79-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
GSE135133
singlecell.broadinstitute.org
explore.data.humancellatlas.org
CELLxGENE
1,705 cells
•
Bakken et al., 2021
Comparative cellular analysis of motor cortex in human, marmoset and mouse
Explore
h5ad
Homo sapiens
Homo sapiens
Oligodendrocyte precursor cell
+5
Oligodendrocyte precursor cell
Primary motor cortex
Primary motor cortex
50-year-old stage
+1
50-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Oligodendrocyte precursor cell
Endothelial cell
Oligodendrocyte
Microglial cell
Leptomeningeal cell
Astrocyte
Tissue
Primary motor cortex
Developmental stage
50-year-old stage
60-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
Nuclei Isolation from Adult Human Brain Tissue for 10x
Human Tissue Slicing and Dissections for Nuclear Isolations
NeMo Analytics - individual species
Nuclei Isolation from Adult_Human_Brain_Tissue
github.com
Cytosplore Viewer
NeMo Analytics - integrated species
github.com
Preparation of frozen nuclei for single-nucleus RNA
github.com
NeMO Archive
Extraction of Nuclei from Brain Tissue
CELLxGENE
1,685 cells
•
de Morree et al., 2025
A molecular cell atlas of mouse lemur, an emerging model primate
Explore
h5ad
Microcebus murinus
Microcebus murinus
Neutrophil
+14
Neutrophil
Uterus
Uterus
Post-juvenile adult stage
Post-juvenile adult stage
Normal
Normal
Female
Female
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Microcebus murinus
Cell type
Neutrophil
Natural killer cell
Endothelial cell of lymphatic vessel
Endothelial cell
Mature nk t cell
Cd8-positive, alpha-beta t cell
Endothelial cell of artery
Smooth muscle cell
Macrophage
Vein endothelial cell
Epithelial cell of uterus
Pericyte
Vascular associated smooth muscle cell
Myofibroblast cell
Fibroblast
Tissue
Uterus
Developmental stage
Post-juvenile adult stage
Disease
Normal
Sex
Female
Technology
10x 3' v2
Suspension type
Cell
Related Links
tabula-microcebus.sf.czbiohub.org
cells.ucsc.edu
Globus
ASAP
v8
1,685 cells
•
de Morree et al., 2025
A molecular cell atlas of mouse lemur, an emerging model primate
Explore
h5ad
Microcebus murinus
Microcebus murinus
Organism
Microcebus murinus
Cell type
Tissue
Developmental stage
Disease
Sex
Technology
Suspension type
CELLxGENE
1,679 cells
•
Tasic et al., 2016
Adult mouse cortical cell taxonomy revealed by single cell transcriptomics
Explore
h5ad
Mus musculus
Mus musculus
Glutamatergic neuron
+6
Glutamatergic neuron
Primary visual cortex
Primary visual cortex
Prime adult stage
Prime adult stage
Normal
Normal
Male
Male
Smart-seq
Smart-seq
Cell
Cell
Organism
Mus musculus
Cell type
Glutamatergic neuron
Oligodendrocyte precursor cell
Endothelial cell
Oligodendrocyte
Microglial cell
Astrocyte
Gabaergic neuron
Tissue
Primary visual cortex
Developmental stage
Prime adult stage
Disease
Normal
Sex
Male
Technology
Smart-seq
Suspension type
Cell
Related Links
GSE71585
ebi.ac.uk
singlecell.broadinstitute.org
CELLxGENE
1,647 cells
•
Joseph et al., 2020
Urethral luminal epithelia are castration‐insensitive cells of the proximal prostate
Explore
h5ad
Mus musculus
Mus musculus
Fibroblast of connective tissue of prostate
+1
Fibroblast of connective tissue of prostate
Prostate gland
+1
Prostate gland
2-month-old stage
2-month-old stage
Normal
Normal
Male
Male
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Mus musculus
Cell type
Fibroblast of connective tissue of prostate
Smooth muscle cell of prostate
Tissue
Prostate gland
Urethra
Developmental stage
2-month-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
strandlab.net
Human Raw Data
Mouse Raw Data
www.gudmap.org
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