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Disease
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Technology
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Cell
934
Nucleus
679
Data Source
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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
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Most cells
Fewest cells
2515
datasets
CELLxGENE
2,094 cells
•
Santo et al., 2025
Exploring the utility of snRNA-seq in profiling human bladder tissue: A comprehensive comparison with scRNA-seq
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+8
T cell
Ureteral orifice
+3
Ureteral orifice
21-year-old stage
21-year-old stage
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Nucleus
+1
Nucleus
Organism
Homo sapiens
Cell type
T cell
Granulocyte
Mature nk t cell
Mast cell
Macrophage
Plasma cell
B cell
Monocyte
Dendritic cell
Tissue
Ureteral orifice
Ureterovesical junction
Dome of urinary bladder
Neck of urinary bladder
Developmental stage
21-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Nucleus
Cell
Related Links
github.com
GSE267964
CELLxGENE
2,075 cells
•
Xu et al., 2022
Smoking modulates different secretory subpopulations expressing SARS-CoV-2 entry genes in the nasal and bronchial airways
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+13
T cell
Bronchial mucosa
Bronchial mucosa
69-year-old stage
+12
69-year-old stage
Normal
Normal
Female
+1
Female
Cel-seq2
Cel-seq2
Cell
Cell
Organism
Homo sapiens
Cell type
T cell
Club cell
Natural killer cell
Lung secretory cell
Bronchial goblet cell
Multiciliated epithelial cell of the bronchus
Mast cell
Pulmonary ionocyte
Respiratory tract epithelial cell
Deuterosomal cell
Myeloid cell
Respiratory tract suprabasal cell
Dendritic cell
Basal cell of epithelium of bronchus
Tissue
Bronchial mucosa
Developmental stage
69-year-old stage
65-year-old stage
87-year-old stage
71-year-old stage
51-year-old stage
74-year-old stage
58-year-old stage
67-year-old stage
64-year-old stage
62-year-old stage
86-year-old stage
70-year-old stage
78-year-old stage
Disease
Normal
Sex
Female
Male
Technology
Cel-seq2
Suspension type
Cell
Related Links
GSE210695
CELLxGENE
2,069 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Cerebral cortex endothelial cell
Cerebral cortex endothelial cell
Middle temporal gyrus
Middle temporal gyrus
69-year-old stage
+23
69-year-old stage
Normal
+1
Normal
Female
+1
Female
10x multiome
+1
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Cerebral cortex endothelial cell
Tissue
Middle temporal gyrus
Developmental stage
69-year-old stage
75-year-old stage
65-year-old stage
89-year-old stage
43-year-old stage
87-year-old stage
85-year-old stage
88-year-old stage
68-year-old stage
29-year-old stage
84-year-old stage
82-year-old stage
50-year-old stage
80-year-old stage
72-year-old stage
81-year-old stage
80 year-old and over stage
Adult stage
77-year-old stage
86-year-old stage
70-year-old stage
60-year-old stage
78-year-old stage
83-year-old stage
Disease
Normal
Dementia
Sex
Female
Male
Technology
10x multiome
10x 3' v3
Suspension type
Nucleus
Related Links
UW Alzheimer's Disease Research Center
Adult Changes in Thought Study
UW BioRepository and Integrated Neuropathology
SEA-AD Homepage
AD Knowledge Portal
DOWNLOAD OFFICIAL DATASET
CELLxGENE
2,065 cells
•
Szabo et al., 2021
Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19
Explore
h5ad
Homo sapiens
Homo sapiens
Neutrophil
+7
Neutrophil
Respiratory airway
Respiratory airway
74-year-old stage
74-year-old stage
Covid-19
Covid-19
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Neutrophil
Erythrocyte
Mature nk t cell
Mast cell
Platelet
Epithelial cell
Myeloid cell
B cell
Tissue
Respiratory airway
Developmental stage
74-year-old stage
Disease
Covid-19
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
data.mendeley.com
github.com
covid19cellatlas.org
CELLxGENE
2,029 cells
•
Isola et al., 2024
A single-cell atlas of the aging mouse ovary
Explore
h5ad
Mus musculus
Mus musculus
Natural killer cell
+10
Natural killer cell
Ovary
Ovary
3-month-old stage
+1
3-month-old stage
Normal
Normal
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Mus musculus
Cell type
Natural killer cell
Leukocyte
Lymphocyte
T-helper 17 cell
Macrophage
Innate lymphoid cell
Cd4-positive, alpha-beta t cell
B cell
Myeloid leukocyte
Monocyte
Dendritic cell
Tissue
Ovary
Developmental stage
3-month-old stage
9-month-old stage
Disease
Normal
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
GSE232309
github.com
omrf.shinyapps.io
CELLxGENE
1,971 cells
•
Lu et al., 2023
High‐resolution single‐cell transcriptomic survey of cardiomyocytes from patients with hypertrophic cardiomyopathy
Explore
h5ad
Homo sapiens
Homo sapiens
Cardiac muscle cell
Cardiac muscle cell
Interventricular septum
Interventricular septum
Sixth decade stage
+3
Sixth decade stage
Normal
+1
Normal
Female
+1
Female
Modified strt-seq
Modified strt-seq
Cell
Cell
Organism
Homo sapiens
Cell type
Cardiac muscle cell
Tissue
Interventricular septum
Developmental stage
Sixth decade stage
Fifth decade stage
Seventh decade stage
Fourth decade stage
Disease
Normal
Hypertrophic cardiomyopathy
Sex
Female
Male
Technology
Modified strt-seq
Suspension type
Cell
Related Links
HRA000328
CELLxGENE
1,887 cells
•
Almanzar et al., 2020
A single-cell transcriptomic atlas characterizes ageing tissues in the mouse
Explore
h5ad
Mus musculus
Mus musculus
Intestinal crypt stem cell
+4
Intestinal crypt stem cell
Large intestine
Large intestine
20-month-old stage and over
20-month-old stage and over
Normal
Normal
Male
Male
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Mus musculus
Cell type
Intestinal crypt stem cell
Hematopoietic stem cell
Large intestine goblet cell
Enterocyte of epithelium of large intestine
Epithelial cell of large intestine
Tissue
Large intestine
Developmental stage
20-month-old stage and over
Disease
Normal
Sex
Male
Technology
10x 3' v2
Suspension type
Cell
Related Links
GSE132042
Processed files
Tabula Muris Senis
SmartSeq2 for HTP Generation of FACS Sorted Single Cell Libraries V.1
github.com
CELLxGENE
1,877 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Sst gabaergic interneuron
Sst gabaergic interneuron
Dorsolateral prefrontal cortex
Dorsolateral prefrontal cortex
69-year-old stage
+20
69-year-old stage
Normal
+1
Normal
Female
+1
Female
10x multiome
+1
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Sst gabaergic interneuron
Tissue
Dorsolateral prefrontal cortex
Developmental stage
69-year-old stage
75-year-old stage
42-year-old stage
89-year-old stage
87-year-old stage
85-year-old stage
88-year-old stage
68-year-old stage
29-year-old stage
84-year-old stage
82-year-old stage
50-year-old stage
80-year-old stage
72-year-old stage
81-year-old stage
80 year-old and over stage
77-year-old stage
86-year-old stage
70-year-old stage
78-year-old stage
83-year-old stage
Disease
Normal
Dementia
Sex
Female
Male
Technology
10x multiome
10x 3' v3
Suspension type
Nucleus
Related Links
UW Alzheimer's Disease Research Center
Adult Changes in Thought Study
UW BioRepository and Integrated Neuropathology
SEA-AD Homepage
AD Knowledge Portal
DOWNLOAD OFFICIAL DATASET
CELLxGENE
1,875 cells
•
Johansen et al., 2023
Interindividual variation in human cortical cell type abundance and expression
Explore
h5ad
Homo sapiens
Homo sapiens
Pvalb chandelier gabaergic interneuron
Pvalb chandelier gabaergic interneuron
Neocortex
Neocortex
Adult stage
Adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Pvalb chandelier gabaergic interneuron
Tissue
Neocortex
Developmental stage
Adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
Allen Brain Map
Reference middle temporal gyrus taxonomy
Allen Brain Map Patch-seq
assets.nemoarchive.org
github.com
CELLxGENE
1,875 cells
•
Orozco et al., 2020
Integration of eQTL and a Single-Cell Atlas in the Human Eye Identifies Causal Genes for Age-Related Macular Degeneration
Explore
h5ad
Homo sapiens
Homo sapiens
Retina horizontal cell
Retina horizontal cell
Retina
Retina
65-year-old stage
+3
65-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Retina horizontal cell
Tissue
Retina
Developmental stage
65-year-old stage
77-year-old stage
70-year-old stage
79-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
GSE135133
singlecell.broadinstitute.org
explore.data.humancellatlas.org
CELLxGENE
1,861 cells
•
Andrews et al., 2021
Single‐Cell, Single‐Nucleus, and Spatial RNA Sequencing of the Human Liver Identifies Cholangiocyte and Mesenchymal Heterogeneity
Explore
h5ad
Homo sapiens
Homo sapiens
Centrilobular region hepatocyte
+2
Centrilobular region hepatocyte
Caudate lobe of liver
Caudate lobe of liver
Prime adult stage
+1
Prime adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Nucleus
+1
Nucleus
Organism
Homo sapiens
Cell type
Centrilobular region hepatocyte
Cholangiocyte
Progenitor cell
Tissue
Caudate lobe of liver
Developmental stage
Prime adult stage
Young adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Nucleus
Cell
Related Links
github.com
GSE185477
explore.data.humancellatlas.org
protocols.io
macparlandlab.shinyapps.io
CELLxGENE
1,858 cells
•
Almanzar et al., 2020
A single-cell transcriptomic atlas characterizes ageing tissues in the mouse
Explore
h5ad
Mus musculus
Mus musculus
T cell
+5
T cell
Diaphragm
Diaphragm
3-month-old stage
+2
3-month-old stage
Normal
Normal
Female
+1
Female
Smart-seq2
Smart-seq2
Cell
Cell
Organism
Mus musculus
Cell type
T cell
Endothelial cell
Skeletal muscle satellite cell
Macrophage
B cell
Mesenchymal stem cell
Tissue
Diaphragm
Developmental stage
3-month-old stage
20-month-old stage and over
18-month-old stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
Suspension type
Cell
Related Links
GSE132042
Processed files
Tabula Muris Senis
SmartSeq2 for HTP Generation of FACS Sorted Single Cell Libraries V.1
github.com
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