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Disease
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Sex
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Technology
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Cell
934
Nucleus
679
Data Source
0
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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
Sort
Most cells
Fewest cells
2515
datasets
CELLxGENE
2,576 cells
•
Reichart et al., 2022
Pathogenic variants damage cell composition and single cell transcription in cardiomyopathies
Explore
h5ad
Homo sapiens
Homo sapiens
Adipocyte
Adipocyte
Heart right ventricle
+3
Heart right ventricle
Pediatric stage
+7
Pediatric stage
Arrhythmogenic right ventricular cardiomyopathy
+3
Arrhythmogenic right ventricular cardiomyopathy
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Adipocyte
Tissue
Heart right ventricle
Apex of heart
Heart left ventricle
Interventricular septum
Developmental stage
Pediatric stage
Sixth decade stage
Fifth decade stage
Third decade stage
Seventh decade stage
Postnatal stage
Fourth decade stage
Eighth decade stage
Disease
Arrhythmogenic right ventricular cardiomyopathy
Dilated cardiomyopathy
Normal
Non-compaction cardiomyopathy
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Nucleus
Related Links
github.com
zenodo.org
ega-archive.org
CELLxGENE
2,575 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Cerebral cortex endothelial cell
Cerebral cortex endothelial cell
Dorsolateral prefrontal cortex
Dorsolateral prefrontal cortex
69-year-old stage
+20
69-year-old stage
Normal
+1
Normal
Female
+1
Female
10x multiome
+1
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Cerebral cortex endothelial cell
Tissue
Dorsolateral prefrontal cortex
Developmental stage
69-year-old stage
75-year-old stage
42-year-old stage
89-year-old stage
87-year-old stage
85-year-old stage
88-year-old stage
68-year-old stage
29-year-old stage
84-year-old stage
82-year-old stage
50-year-old stage
80-year-old stage
72-year-old stage
81-year-old stage
80 year-old and over stage
77-year-old stage
86-year-old stage
70-year-old stage
78-year-old stage
83-year-old stage
Disease
Normal
Dementia
Sex
Female
Male
Technology
10x multiome
10x 3' v3
Suspension type
Nucleus
Related Links
UW Alzheimer's Disease Research Center
Adult Changes in Thought Study
UW BioRepository and Integrated Neuropathology
SEA-AD Homepage
AD Knowledge Portal
DOWNLOAD OFFICIAL DATASET
CELLxGENE
2,574 cells
•
Moorman et al., 2025
Author Correction: Progressive plasticity during colorectal cancer metastasis
Explore
h5ad
Homo sapiens
Homo sapiens
Malignant cell
Malignant cell
Liver
+1
Liver
50-year-old stage
50-year-old stage
Colorectal cancer
Colorectal cancer
Male
Male
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Malignant cell
Tissue
Liver
Sigmoid colon
Developmental stage
50-year-old stage
Disease
Colorectal cancer
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
Github
Single Cell Portal
2,573 cells
Explore
Mus musculus
Mus musculus
Obsolete inhibitory neuron
+4
Obsolete inhibitory neuron
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Obsolete inhibitory neuron
Oligodendrocyte
Astrocyte of the cerebellum
Brain microvascular endothelial cell
Obsolete excitatory neuron
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD719) (section 197)
Corresponding registered brain section (MD719) (section 198)
CELLxGENE
2,567 cells
•
Sampath Kumar et al., 2023
Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis
Explore
h5ad
Mus musculus
Mus musculus
Cardiac valve cell
+15
Cardiac valve cell
Embryo
Embryo
Theiler stage 14
Theiler stage 14
Normal
Normal
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Cardiac valve cell
Spinal cord interneuron
Premigratory neural crest cell
Paraxial cell
Notochordal cell
Neuroplacodal cell
Neurectodermal cell
Hemangioblast
Mesodermal cell
Gut endothelial cell
Primitive red blood cell
Splanchnic mesodermal cell
Surface ectodermal cell
Midbrain dopaminergic neuron
Endodermal cell
Anterior visceral endoderm cell
Tissue
Embryo
Developmental stage
Theiler stage 14
Disease
Normal
Sex
Technology
Slide-seqv2
Suspension type
Related Links
insitubiology.org
GSE197353
figshare.com
figshare.com
figshare.com
CELLxGENE
2,552 cells
•
Apostolov et al., 2024
Profiling of epithelial functional states and fibroblast phenotypes in hormone therapy-naïve localised prostate cancer
Explore
h5ad
Homo sapiens
Homo sapiens
Fibroblast of connective tissue of prostate
Fibroblast of connective tissue of prostate
Prostate gland
Prostate gland
69-year-old stage
+14
69-year-old stage
Prostatic acinar adenocarcinoma
Prostatic acinar adenocarcinoma
Male
Male
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Fibroblast of connective tissue of prostate
Tissue
Prostate gland
Developmental stage
69-year-old stage
75-year-old stage
71-year-old stage
61-year-old stage
54-year-old stage
68-year-old stage
72-year-old stage
59-year-old stage
64-year-old stage
45-year-old stage
62-year-old stage
70-year-old stage
46-year-old stage
60-year-old stage
63-year-old stage
Disease
Prostatic acinar adenocarcinoma
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
GSE145843
CELLxGENE
2,544 cells
•
Enge et al., 2017
Single-Cell Analysis of Human Pancreas Reveals Transcriptional Signatures of Aging and Somatic Mutation Patterns
Explore
h5ad
Homo sapiens
Homo sapiens
Type b pancreatic cell
+5
Type b pancreatic cell
Islet of langerhans
Islet of langerhans
21-year-old stage
+7
21-year-old stage
Normal
Normal
Female
+1
Female
Smart-seq2
Smart-seq2
Cell
Cell
Organism
Homo sapiens
Cell type
Type b pancreatic cell
Mesenchymal cell
Acinar cell
Type d enteroendocrine cell
Type a enteroendocrine cell
Pancreatic ductal cell
Tissue
Islet of langerhans
Developmental stage
21-year-old stage
54-year-old stage
44-year-old stage
38-year-old stage
1-month-old stage
22-year-old stage
5-year-old stage
6-year-old stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
Suspension type
Cell
Related Links
GSE81547
explore.data.humancellatlas.org
cells.ucsc.edu
cirm.ucsc.edu
ebi.ac.uk
ASAP
v8
2,544 cells
•
Enge et al., 2017
Single-Cell Analysis of Human Pancreas Reveals Transcriptional Signatures of Aging and Somatic Mutation Patterns
Explore
h5ad
Homo sapiens
Homo sapiens
Organism
Homo sapiens
Cell type
Tissue
Developmental stage
Disease
Sex
Technology
Suspension type
Related Links
ncbi.nlm.nih.gov
ebi.ac.uk
CELLxGENE
2,526 cells
•
de Morree et al., 2025
A molecular cell atlas of mouse lemur, an emerging model primate
Explore
h5ad
Microcebus murinus
Microcebus murinus
Neutrophil
+30
Neutrophil
Hypothalamus-pituitary axis
Hypothalamus-pituitary axis
Post-juvenile adult stage
Post-juvenile adult stage
Normal
Normal
Male
Male
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Microcebus murinus
Cell type
Neutrophil
Erythroid progenitor cell
Oligodendrocyte precursor cell
Oligodendrocyte
Neuroendocrine cell
Endothelial cell of sinusoid
Hematopoietic precursor cell
Mammotroph
Erythroid lineage cell
Capillary endothelial cell
Plasmacytoid dendritic cell
Megakaryocyte progenitor cell
Lymphocyte
Ependymal cell
Macrophage
Corticotroph
Gonadtroph
Leptomeningeal cell
Plasma cell
B cell
Pericyte
Granulocyte monocyte progenitor cell
Monocyte
Vascular associated smooth muscle cell
Astrocyte
Basophil
Thyrotroph
Conventional dendritic cell
Fibroblast
Gabaergic neuron
Somatotroph
Tissue
Hypothalamus-pituitary axis
Developmental stage
Post-juvenile adult stage
Disease
Normal
Sex
Male
Technology
10x 3' v2
Suspension type
Cell
Related Links
tabula-microcebus.sf.czbiohub.org
cells.ucsc.edu
Globus
ASAP
v8
2,526 cells
•
de Morree et al., 2025
A molecular cell atlas of mouse lemur, an emerging model primate
Explore
h5ad
Microcebus murinus
Microcebus murinus
Organism
Microcebus murinus
Cell type
Tissue
Developmental stage
Disease
Sex
Technology
Suspension type
CELLxGENE
2,489 cells
•
Szabo et al., 2021
Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19
Explore
h5ad
Homo sapiens
Homo sapiens
Neutrophil
+6
Neutrophil
Respiratory airway
Respiratory airway
49-year-old stage
49-year-old stage
Covid-19
Covid-19
Male
Male
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Neutrophil
Mature nk t cell
Mast cell
Ionocyte
Epithelial cell
Myeloid cell
B cell
Tissue
Respiratory airway
Developmental stage
49-year-old stage
Disease
Covid-19
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
data.mendeley.com
github.com
covid19cellatlas.org
CELLxGENE
2,487 cells
•
Szabo et al., 2021
Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19
Explore
h5ad
Homo sapiens
Homo sapiens
Neutrophil
+7
Neutrophil
Respiratory airway
Respiratory airway
49-year-old stage
49-year-old stage
Covid-19
Covid-19
Male
Male
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Neutrophil
Erythrocyte
Mature nk t cell
Mast cell
Ionocyte
Epithelial cell
Myeloid cell
B cell
Tissue
Respiratory airway
Developmental stage
49-year-old stage
Disease
Covid-19
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
data.mendeley.com
github.com
covid19cellatlas.org
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