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Cell Type
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Tissue
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Developmental Stage
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Disease
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Sex
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Technology
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Cell
934
Nucleus
679
Data Source
0
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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
Sort
Most cells
Fewest cells
2515
datasets
CELLxGENE
2,833 cells
•
Fawkner-Corbett et al., 2021
Spatiotemporal analysis of human intestinal development at single-cell resolution
Explore
h5ad
Homo sapiens
Homo sapiens
Mesothelial cell
+1
Mesothelial cell
Ileum
+1
Ileum
19th week post-fertilization stage
+9
19th week post-fertilization stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Mesothelial cell
Myofibroblast cell
Tissue
Ileum
Colon
Developmental stage
19th week post-fertilization stage
21st week post-fertilization stage
23rd week post-fertilization stage
13th week post-fertilization stage
14th week post-fertilization stage
17th week post-fertilization stage
16th week post-fertilization stage
18th week post-fertilization stage
Carnegie stage 22
11th week post-fertilization stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
GSE158328
simmonslab.shinyapps.io
Supplementary data
dropbox.com
GSE158702
explore.data.humancellatlas.org
CELLxGENE
2,798 cells
•
Ulrich et al., 2021
Cellular heterogeneity of human fallopian tubes in normal and hydrosalpinx disease states identified by scRNA-seq
Explore
h5ad
Homo sapiens
Homo sapiens
Ciliated epithelial cell
Ciliated epithelial cell
Ampulla of fallopian tube
+3
Ampulla of fallopian tube
52-year-old stage
+3
52-year-old stage
Normal
Normal
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Ciliated epithelial cell
Tissue
Ampulla of fallopian tube
Fimbria of fallopian tube
Fallopian tube
Isthmus of fallopian tube
Developmental stage
52-year-old stage
30-year-old stage
46-year-old stage
31-year-old stage
Disease
Normal
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
explore.data.humancellatlas.org
ncbi.nlm.nih.gov
CELLxGENE
2,743 cells
•
Apostolov et al., 2024
Profiling of epithelial functional states and fibroblast phenotypes in hormone therapy-naïve localised prostate cancer
Explore
h5ad
Homo sapiens
Homo sapiens
Mast cell
+4
Mast cell
Prostate gland
Prostate gland
69-year-old stage
+14
69-year-old stage
Prostatic acinar adenocarcinoma
Prostatic acinar adenocarcinoma
Male
Male
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Mast cell
Plasmacytoid dendritic cell
Macrophage
Myeloid cell
Monocyte
Tissue
Prostate gland
Developmental stage
69-year-old stage
75-year-old stage
71-year-old stage
61-year-old stage
54-year-old stage
68-year-old stage
72-year-old stage
59-year-old stage
64-year-old stage
45-year-old stage
62-year-old stage
70-year-old stage
46-year-old stage
60-year-old stage
63-year-old stage
Disease
Prostatic acinar adenocarcinoma
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
GSE145843
CELLxGENE
2,698 cells
•
Gu et al., 2024
Immune microniches shape intestinal Treg function
Explore
h5ad
Mus musculus
Mus musculus
Gamma-delta t cell
+7
Gamma-delta t cell
Caecum
+3
Caecum
Prime adult stage
Prime adult stage
Normal
Normal
10x 5' v2
10x 5' v2
Cell
Cell
Organism
Mus musculus
Cell type
Gamma-delta t cell
Group 2 innate lymphoid cell
Group 3 innate lymphoid cell
Naive thymus-derived cd8-positive, alpha-beta t cell
T-helper 17 cell
Regulatory t cell
Cd4-positive, alpha-beta memory t cell
Naive thymus-derived cd4-positive, alpha-beta t cell
Tissue
Caecum
Lamina propria of small intestine
Small intestine peyer's patch
Mesenteric lymph node
Developmental stage
Prime adult stage
Disease
Normal
Sex
Technology
10x 5' v2
Suspension type
Cell
Related Links
treg-gut-niches.cellgeni.sanger.ac.uk
scRNA-seq, scTCR-seq and Visium data
CELLxGENE
2,693 cells
•
Gu et al., 2024
Immune microniches shape intestinal Treg function
Explore
h5ad
Mus musculus
Mus musculus
Plasmacytoid dendritic cell
+6
Plasmacytoid dendritic cell
Caecum
+3
Caecum
Prime adult stage
Prime adult stage
Normal
Normal
10x 5' v2
10x 5' v2
Cell
Cell
Organism
Mus musculus
Cell type
Plasmacytoid dendritic cell
Macrophage
Cd103-positive dendritic cell
Cd8-alpha-positive cd11b-negative dendritic cell
Monocyte
Conventional dendritic cell
Dendritic cell
Tissue
Caecum
Lamina propria of small intestine
Small intestine peyer's patch
Mesenteric lymph node
Developmental stage
Prime adult stage
Disease
Normal
Sex
Technology
10x 5' v2
Suspension type
Cell
Related Links
treg-gut-niches.cellgeni.sanger.ac.uk
scRNA-seq, scTCR-seq and Visium data
CELLxGENE
2,685 cells
•
The Tabula Sapiens Consortium* et al., 2022
The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans
Explore
h5ad
Homo sapiens
Homo sapiens
Retinal ganglion cell
+6
Retinal ganglion cell
Ascending colon
+15
Ascending colon
37-year-old stage
+7
37-year-old stage
Normal
Normal
Female
+1
Female
Smart-seq2
+1
Smart-seq2
Cell
Cell
Organism
Homo sapiens
Cell type
Retinal ganglion cell
Enteroglial cell
Retinal bipolar neuron
Radial glial cell
Retina horizontal cell
Neuron
Eye photoreceptor cell
Tissue
Ascending colon
Heart right ventricle
Duodenum
Small intestine
Cornea
Ileum
Right cardiac atrium
Anterior segment of eyeball
Eye
Heart
Sclera
Posterior segment of eyeball
Large intestine
Retinal neural layer
Lacrimal gland
Sigmoid colon
Developmental stage
37-year-old stage
56-year-old stage
57-year-old stage
59-year-old stage
45-year-old stage
46-year-old stage
60-year-old stage
40-year-old stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
10x 3' v3
Suspension type
Cell
Related Links
registry.opendata.aws
Tabula Sapiens Portal
explore.data.humancellatlas.org
cells.ucsc.edu
genome.ucsc.edu
The Tabula Sapiens Consortium et al. (2024) bioRxiv
CELLxGENE
2,647 cells
•
Article
Explore
h5ad
Mus musculus
Mus musculus
Granulosa cell
+19
Granulosa cell
Ovary
Ovary
9-month-old stage
9-month-old stage
Normal
Normal
Female
Female
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Granulosa cell
Blood vessel endothelial cell
Stromal cell
Endothelial cell of lymphatic vessel
Cumulus granulosa cell
Smooth muscle cell
Steroidogenic stromal cell of ovary
Endothelial cell of vascular tree
Ovarian surface epithelial cell
Adipocyte
Macrophage
Oviduct secretory cell
Oocyte
Late luteal cell
Atretic granulosa cell
Early luteal cell
Theca cell
Dendritic cell
Ovarian fibroblast
Mural granulosa cell
Tissue
Ovary
Developmental stage
9-month-old stage
Disease
Normal
Sex
Female
Technology
Slide-seqv2
Suspension type
CELLxGENE
2,642 cells
•
Anderson-Crannage et al., 2023
Inflammation-mediated fibroblast activation and immune dysregulation in collagen VII-deficient skin
Explore
h5ad
Mus musculus
Mus musculus
Keratinocyte
Keratinocyte
Autopod skin
Autopod skin
2-week-old stage
2-week-old stage
Epidermolysis bullosa
+1
Epidermolysis bullosa
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Mus musculus
Cell type
Keratinocyte
Tissue
Autopod skin
Developmental stage
2-week-old stage
Disease
Epidermolysis bullosa
Normal
Sex
Technology
10x 3' v3
Suspension type
Cell
Related Links
GSE222250
Single Cell Portal
2,601 cells
Explore
Mus musculus
Mus musculus
Obsolete inhibitory neuron
+3
Obsolete inhibitory neuron
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Obsolete inhibitory neuron
Oligodendrocyte precursor cell
Obsolete excitatory neuron
Astrocyte
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD705) (section 107)
CELLxGENE
2,598 cells
•
Szabo et al., 2021
Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19
Explore
h5ad
Homo sapiens
Homo sapiens
Neutrophil
+5
Neutrophil
Respiratory airway
Respiratory airway
66-year-old stage
66-year-old stage
Covid-19
Covid-19
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Neutrophil
Erythrocyte
Mature nk t cell
Epithelial cell
Myeloid cell
B cell
Tissue
Respiratory airway
Developmental stage
66-year-old stage
Disease
Covid-19
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
data.mendeley.com
github.com
covid19cellatlas.org
CELLxGENE
2,590 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
L5 extratelencephalic projecting glutamatergic cortical neuron
L5 extratelencephalic projecting glutamatergic cortical neuron
Middle temporal gyrus
Middle temporal gyrus
69-year-old stage
+23
69-year-old stage
Normal
+1
Normal
Female
+1
Female
10x multiome
+1
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
L5 extratelencephalic projecting glutamatergic cortical neuron
Tissue
Middle temporal gyrus
Developmental stage
69-year-old stage
75-year-old stage
65-year-old stage
89-year-old stage
43-year-old stage
87-year-old stage
85-year-old stage
88-year-old stage
68-year-old stage
29-year-old stage
84-year-old stage
82-year-old stage
50-year-old stage
80-year-old stage
72-year-old stage
81-year-old stage
80 year-old and over stage
Adult stage
77-year-old stage
86-year-old stage
70-year-old stage
60-year-old stage
78-year-old stage
83-year-old stage
Disease
Normal
Dementia
Sex
Female
Male
Technology
10x multiome
10x 3' v3
Suspension type
Nucleus
Related Links
UW Alzheimer's Disease Research Center
Adult Changes in Thought Study
UW BioRepository and Integrated Neuropathology
SEA-AD Homepage
AD Knowledge Portal
DOWNLOAD OFFICIAL DATASET
CELLxGENE
2,576 cells
•
Zhang et al., 2021
Single-cell analyses of renal cell cancers reveal insights into tumor microenvironment, cell of origin, and therapy response
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+4
T cell
Kidney
Kidney
43-year-old stage
43-year-old stage
Chromophobe renal cell carcinoma
Chromophobe renal cell carcinoma
Female
Female
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
T cell
Endothelial cell
Macrophage
Abnormal cell
Vascular associated smooth muscle cell
Tissue
Kidney
Developmental stage
43-year-old stage
Disease
Chromophobe renal cell carcinoma
Sex
Female
Technology
10x 3' v2
Suspension type
Cell
Related Links
explore.data.humancellatlas.org
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