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Cell
934
Nucleus
679
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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
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Most cells
Fewest cells
2515
datasets
CELLxGENE
4,992 cells
•
Yayon et al., 2024
A spatial human thymus cell atlas mapped to a continuous tissue axis
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+6
T cell
Thymus
Thymus
3-month-old stage
3-month-old stage
Normal
Normal
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
T cell
Smooth muscle cell
Epithelial cell
Macrophage
Myelocyte
B cell
Dendritic cell
Tissue
Thymus
Developmental stage
3-month-old stage
Disease
Normal
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
github.com
BioImage Archive
PRJEB77091
EGAD00001015384
E-MTAB-8581
GSE271304
GSE206710
CITE-seq
TissueTag github
CELLxGENE
4,992 cells
•
Kuppe et al., 2022
Spatial multi-omic map of human myocardial infarction
Explore
h5ad
Homo sapiens
Homo sapiens
Cardiac endothelial cell
+7
Cardiac endothelial cell
Heart left ventricle
Heart left ventricle
40-year-old stage
40-year-old stage
Myocardial infarction
Myocardial infarction
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Cardiac endothelial cell
Mast cell
Lymphoid lineage restricted progenitor cell
Immature innate lymphoid cell
Neuronal receptor cell
Cardiac muscle myoblast
Smooth muscle myoblast
Fibroblast of cardiac tissue
Tissue
Heart left ventricle
Developmental stage
40-year-old stage
Disease
Myocardial infarction
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
zenodo.org
github.com
zenodo.org
github.com
kramannlab.com
zenodo.org
ega-archive.org
zenodo.org
data.humancellatlas.org
CELLxGENE
4,992 cells
•
Ganier et al., 2024
Multiscale spatial mapping of cell populations across anatomical sites in healthy human skin and basal cell carcinoma
Explore
h5ad
Homo sapiens
Homo sapiens
Natural killer cell
+13
Natural killer cell
Skin of temple
Skin of temple
33-year-old stage
33-year-old stage
Normal
Normal
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Natural killer cell
Endothelial cell of lymphatic vessel
Basal cell
Schwann cell
Smooth muscle cell
Plasmacytoid dendritic cell
Endothelial cell of vascular tree
Basal cell of epidermis
Macrophage
Plasma cell
Pericyte
Suprabasal keratinocyte
Fibroblast
Chondrocyte
Tissue
Skin of temple
Developmental stage
33-year-old stage
Disease
Normal
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Spatial Skin Atlas
scRNAseq (E-MTAB-13085)
Visium (E-MTAB-13084)
explore.data.humancellatlas.org
CELLxGENE
4,992 cells
•
Coutant et al., 2023
Spatial Transcriptomics Reveal Pitfalls and Opportunities for the Detection of Rare High-Plasticity Breast Cancer Subtypes
Explore
h5ad
Homo sapiens
Homo sapiens
Epithelial cell
+2
Epithelial cell
Breast
Breast
Adult stage
Adult stage
Triple-negative breast carcinoma
Triple-negative breast carcinoma
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Epithelial cell
Malignant cell
Fibroblast
Tissue
Breast
Developmental stage
Adult stage
Disease
Triple-negative breast carcinoma
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
GSE213688
CELLxGENE
4,992 cells
•
Yayon et al., 2024
A spatial human thymus cell atlas mapped to a continuous tissue axis
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+7
T cell
Thymus
Thymus
13th week post-fertilization stage
13th week post-fertilization stage
Normal
Normal
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
T cell
Endothelial cell
Schwann cell
Epithelial cell
B cell
Pericyte
Fibroblast
Dendritic cell
Tissue
Thymus
Developmental stage
13th week post-fertilization stage
Disease
Normal
Sex
Technology
Visium spatial gene expression v1
Suspension type
Related Links
github.com
BioImage Archive
PRJEB77091
EGAD00001015384
E-MTAB-8581
GSE271304
GSE206710
CITE-seq
TissueTag github
CELLxGENE
4,992 cells
•
Ganier et al., 2024
Multiscale spatial mapping of cell populations across anatomical sites in healthy human skin and basal cell carcinoma
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell of lymphatic vessel
+7
Endothelial cell of lymphatic vessel
Inguinal part of abdomen
Inguinal part of abdomen
63-year-old stage
63-year-old stage
Normal
Normal
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Endothelial cell of lymphatic vessel
Smooth muscle cell
Endothelial cell of vascular tree
Basal cell of epidermis
Macrophage
Pericyte
Suprabasal keratinocyte
Fibroblast
Tissue
Inguinal part of abdomen
Developmental stage
63-year-old stage
Disease
Normal
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Spatial Skin Atlas
scRNAseq (E-MTAB-13085)
Visium (E-MTAB-13084)
explore.data.humancellatlas.org
CELLxGENE
4,992 cells
•
Kanemaru et al., 2023
Spatially resolved multiomics of human cardiac niches
Explore
h5ad
Homo sapiens
Homo sapiens
Cardiac pacemaker cell of sinoatrial node
+24
Cardiac pacemaker cell of sinoatrial node
Sinoatrial node
Sinoatrial node
Third decade stage
Third decade stage
Normal
Normal
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Cardiac pacemaker cell of sinoatrial node
Neutrophil
Endocardial cell
Dendritic cell, human
Endothelial cell of lymphatic vessel
Endothelial cell
Mast cell
Cd8-positive, alpha-beta t cell
Endothelial cell of artery
Smooth muscle cell
Smooth muscle cell of the pulmonary artery
Adipocyte
Cd8-positive, alpha-beta cytotoxic t cell
Macrophage
Glial cell
Plasma cell
Vein endothelial cell
Cd14-low, cd16-positive monocyte
B cell
Pericyte
Naive thymus-derived cd4-positive, alpha-beta t cell
Mucosal invariant t cell
Regular atrial cardiac myocyte
Monocyte
Fibroblast of cardiac tissue
Tissue
Sinoatrial node
Developmental stage
Third decade stage
Disease
Normal
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
heartcellatlas.org
multiome snRNA-seq (E-MTAB-12916)
multiome snATAC-seq (E-MTAB-12919)
Visium (E-MTAB-12975)
explore.data.humancellatlas.org
CELLxGENE
4,992 cells
•
Zhang et al., 2023
A human embryonic limb cell atlas resolved in space and time
Explore
h5ad
Homo sapiens
Homo sapiens
Muscle cell
+9
Muscle cell
Hindlimb
Hindlimb
Carnegie stage 17
Carnegie stage 17
Normal
Normal
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Muscle cell
Fibroblast of dermis
Tendon cell
Basal cell
Schwann cell
Primitive red blood cell
Chondroblast
Mesenchymal cell
Skeletal muscle myoblast
Chondrocyte
Tissue
Hindlimb
Developmental stage
Carnegie stage 17
Disease
Normal
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
developmental.cellatlas.io
mouse scRNA-seq
human Visium
human scRNA-seq
github.com
CELLxGENE
4,992 cells
•
Madissoon et al., 2022
A spatially resolved atlas of the human lung characterizes a gland-associated immune niche
Explore
h5ad
Homo sapiens
Homo sapiens
Muscle cell
+24
Muscle cell
Bronchus
Bronchus
Eighth decade stage
Eighth decade stage
Normal
Normal
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Muscle cell
Airway submucosal gland duct basal cell
Ciliated cell
Endothelial cell of lymphatic vessel
Lung secretory cell
Mast cell
Iga plasma cell
Blood vessel smooth muscle cell
Lung resident memory cd8-positive, alpha-beta t cell
Basal cell
Endothelial cell of artery
Smooth muscle cell of the pulmonary artery
Igg plasma cell
Bronchus fibroblast of lung
Lung macrophage
Regulatory t cell
Serous secreting cell of bronchus submucosal gland
Vein endothelial cell
Lung perichondrial fibroblast
Adventitial cell
Naive b cell
Fibroblast
Dendritic cell
Lung pericyte
Chondrocyte
Tissue
Bronchus
Developmental stage
Eighth decade stage
Disease
Normal
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
PRJEB52292
explore.data.humancellatlas.org
E-MTAB-11640
S-BIAD570
5locationslung.cellgeni.sanger.ac.uk
CELLxGENE
4,992 cells
•
Kuppe et al., 2022
Spatial multi-omic map of human myocardial infarction
Explore
h5ad
Homo sapiens
Homo sapiens
Adipocyte of epicardial fat of left ventricle
+9
Adipocyte of epicardial fat of left ventricle
Heart left ventricle
Heart left ventricle
74-year-old stage
74-year-old stage
Myocardial infarction
Myocardial infarction
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Adipocyte of epicardial fat of left ventricle
Cardiac endothelial cell
Mast cell
Lymphoid lineage restricted progenitor cell
Immature innate lymphoid cell
Neuronal receptor cell
Pericyte
Cardiac muscle myoblast
Smooth muscle myoblast
Fibroblast of cardiac tissue
Tissue
Heart left ventricle
Developmental stage
74-year-old stage
Disease
Myocardial infarction
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
zenodo.org
github.com
zenodo.org
github.com
kramannlab.com
zenodo.org
ega-archive.org
zenodo.org
data.humancellatlas.org
CELLxGENE
4,992 cells
•
Zhang et al., 2023
A human embryonic limb cell atlas resolved in space and time
Explore
h5ad
Homo sapiens
Homo sapiens
Osteoblast
+12
Osteoblast
Hindlimb
Hindlimb
Carnegie stage 16
Carnegie stage 16
Normal
Normal
Female
+1
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Osteoblast
Muscle cell
Fibroblast of dermis
Tendon cell
Basal cell
Endothelial cell of artery
Schwann cell
Smooth muscle cell
Primitive red blood cell
Chondroblast
Mesenchymal cell
Skeletal muscle myoblast
Chondrocyte
Tissue
Hindlimb
Developmental stage
Carnegie stage 16
Disease
Normal
Sex
Female
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
developmental.cellatlas.io
mouse scRNA-seq
human Visium
human scRNA-seq
github.com
CELLxGENE
4,992 cells
•
Pranzatelli et al., 2024
GZMK+CD8+ T cells Target A Specific Acinar Cell Type in Sjögren’s Disease
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell
+7
Endothelial cell
Labial gland
Labial gland
41-year-old stage
41-year-old stage
Immune system disorder
+1
Immune system disorder
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Endothelial cell
Iga plasma cell
Ionocyte
Duct epithelial cell
Acinar cell of salivary gland
Cd4-positive, alpha-beta t cell
Fibroblast
Dendritic cell
Tissue
Labial gland
Developmental stage
41-year-old stage
Disease
Immune system disorder
Normal
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
github.com
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